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At least 235 records · Page 13

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

We seek to transform how new and emergent variants of pandemic-causing viruses, specifically SARS-CoV-2, are identified and classified. By adapting large language models (LLMs) for genomic data, we build genome-scale language models (GenSLMs) which can learn the evolutionary landscape of SARS-CoV-2 genomes. By pre-training on over 110 million prokaryotic gene sequences and fine-tuning a SARS-CoV-2-specific model on 1.5 million genomes, we show that GenSLMs can accurately and rapidly identify variants of concern. Thus, to our knowledge, GenSLMs represents one of the first whole-genome scale foundation models which can generalize to other prediction tasks. We demonstrate scaling of GenSLMs on GPU-based supercomputers and AI-hardware accelerators utilizing 1.63 Zettaflops in training runs with a sustained performance of 121 PFLOPS in mixed precision and peak of 850 PFLOPS. We present initial scientific insights from examining GenSLMs in tracking evolutionary dynamics of SARS-CoV-2, paving the path to realizing this on large biological data.

Zvyagin, Maxim↗

An airport wind shear detection and warning system using Doppler radar

Two numerical models of aircraft performance are developed to relate atmospheric wind signals in wind-shear situations to aircraft response. Both models produce time histories of pitch angle, airspeed, height above the ground, and other parameters for simulating aircraft making precision approaches along a 3-deg glide slope to the runway. Simulations conducted using thunderstorm environment wind data indicate that the horizontal wind component is at least as important as the vertical component in determining aircraft response to wind shear. Obtaining quantitative measurements of aircraft approach or departure quality is found to depend on several factors, including the knowledge of winds along the expected flight track, clear-air detection in a quasi-horizontal path, and a near continuous estimate of approach deterioration due to shear conditions.

Mccarthy, J.↗

Longwall shearer tracking system

A tracking system for measuring and recording the movements of a longwall shearer vehicle includes an optical tracking assembly carried at one end of a desired vehicle path and a retroreflector assembly carried by the vehicle. Continuous horizontal and vertical light beams are alternately transmitted by means of a rotating Dove prism to the reflector assembly. A vertically reciprocating reflector interrupts the continuous light beams and converts these to discrete horizontal and vertical light beam images transmitted at spaced intervals along the path. A second rotating Dove prism rotates the vertical images to convert them to a second series of horizontal images while the first mentioned horizontal images are left unrotated and horizontal. The images are recorded on a film.

Poulsen, P. D.↗

Quaternions for Galileo scan platform control

The application of quaternions for the articulation control of the Galileo scan platform is presented in this paper. The purpose of selecting quaternions is to minimize onboard computation time and program size. Attention has been focused on performing inertial pointing while the spacecraft is in a dual spin configuration. Target quaternion and relative target quaternion are introduced and used to specify the target position of the scan platform for point-to-point absolute slews and mosaic relative slews, respectively. The pointing error of the platform is represented by an error quaternion which is converted into gimbal angular errors defining the attitude change. For path control, a moving target quaternion is generated; the corresponding tracking error quaternion and the related spacecraft motion compensation capability are also addressed. A sample slew case is used to demonstrate the implementation of these concepts.

Breckenridge, W. G.↗

Experimental verification of modified synthetic discriminant function filters for rotation invariance

Experimental results are presented which demonstrate that effective binary synthetic discriminant functions (SDFs) can be constructed if the binary nature of the filter modulation is included in SDF synthesis. It is also shown that the iterative procedure needed to produce the SDF is well performed on the optical correlator, as opposed to off-line computation. Binary SDF filters have been demonstrated which produce approximately equal correlation peaks over in-plane rotation ranges up to 75 deg and out-of-plane rotation ranges up to 60 deg. This technique, combined with the translational position invariance of optical filters, allows a single filter to track a Shuttle Orbiter as it moves along a curved path across the input field.

Reid, Max B.↗

Wavelet Analysis of Satellite Images for Coastal Watch

The two-dimensional wavelet transform is a very efficient bandpass filter, which can be used to separate various scales of processes and show their relative phase/location. In this paper, algorithms and techniques for automated detection and tracking of mesoscale features from satellite imagery employing wavelet analysis are developed. The wavelet transform has been applied to satellite images, such as those from synthetic aperture radar (SAR), advanced very-high-resolution radiometer (AVHRR), and coastal zone color scanner (CZCS) for feature extraction. The evolution of mesoscale features such as oil slicks, fronts, eddies, and ship wakes can be tracked by the wavelet analysis using satellite data from repeating paths. Several examples of the wavelet analysis applied to various satellite Images demonstrate the feasibility of this technique for coastal monitoring.

Liu, Antony K.↗

The Dynamical Evolution of A Tubular Leonid Persistent Train

The dynamical evolution of the persistent train of a bright Leonid meteor was examined for evidence of the source of the luminosity and the physical conditions in the meteor path. The train consisted of two parallel somewhat diffuse luminous tracks, interpreted as the walls of a tube. A general lack of wind shear along the trail allowed these structures to remain intact for nearly 200 s, from which it was possible to determine that the tubular structure expanded at a near constant 10.5 m/s, independent of altitude between 86 and 97 km. An initial fast decrease of train intensity below 90 km was followed by an increase in intensity and then a gradual decrease at longer times, whereas at high attitudes the integrated intensity was nearly constant with time. These results are compared to a model that describes the dynamical evolution of the train by diffusion, following an initial rapid expansion of the hot gaseous trail behind the meteoroid. The train luminosity is produced by O ((sup 1)S) emission at 557 nm, driven by elevated atomic O levels produced by the meteor impact, as well as chemiluminescent reactions of the ablated metals Na and Fe with O3. Ozone is rapidly removed within the train, both by thermal decomposition and catalytic destruction by the metallic species. Hence, the brightest emission occurs at the edge of the train between outwardly diffusing metallic species and inwardly diffusing O3. Although the model is able to account plausibly for a number of characteristic features of the train evolution, significant discrepancies remain that cannot easily be resolved.

Jenniskens, Peter↗

Simulations of Aerosol Microphysics in the NASA GEOS-5 Model

Aerosol-cloud-chemistry interactions have potentially large but uncertain impacts on Earth's climate. One path to addressing these uncertainties is to construct models that incorporate various components of the Earth system and to test these models against data. To that end, we have previously incorporated the Goddard Chemistry, Aerosol, Radiation, and Transport (GOCART) module online in the NASA Goddard Earth Observing System model (GEOS-5). GEOS-5 provides a platform for Earth system modeling, incorporating atmospheric and ocean general circulation models, a land surface model, a data assimilation system, and treatments of atmospheric chemistry and hydrologic cycle. Including GOCART online in this framework has provided a path for interactive aerosol-climate studies; however, GOCART only tracks the mass of aerosols as external mixtures and does not include the detailed treatments of aerosol size distribution and composition (internal mixtures) needed for aerosol-cloud-chemistry-climate studies. To address that need we have incorporated the Community Aerosol and Radiation Model for Atmospheres (CARMA) online in GEOS-5. CARMA is a sectional aerosol-cloud microphysical model, capable of treating both aerosol size and composition explicitly be resolving the aerosol distribution into a variable number of size and composition groupings. Here we present first simulations of dust, sea salt, and smoke aerosols in GEOS-5 as treated by CARMA. These simulations are compared to available aerosol satellite, ground, and aircraft data and as well compared to the simulated distributions in our current GOCART based system.

Colarco, Peter↗

Recent Developments in the Design, Capabilities and Autonomous Operations of a Lightweight Surface Manipulation System and Test-bed

The first generation of a versatile high performance device for performing payload handling and assembly operations on planetary surfaces, the Lightweight Surface Manipulation System (LSMS), has been designed and built. Over the course of its development, conventional crane type payload handling configurations and operations have been successfully demonstrated and the range of motion, types of operations and the versatility greatly expanded. This enhanced set of 1st generation LSMS hardware is now serving as a laboratory test-bed allowing the continuing development of end effectors, operational techniques and remotely controlled and automated operations. This paper describes the most recent LSMS and test-bed development activities, that have focused on two major efforts. The first effort was to complete a preliminary design of the 2nd generation LSMS that has the capability for limited mobility and can reposition itself between lander decks, mobility chassis, and fixed base locations. A major portion of this effort involved conducting a study to establish the feasibility of, and define, the specifications for a lightweight cable-drive waist joint. The second effort was to continue expanding the versatility and autonomy of large planetary surface manipulators using the 1st generation LSMS as a test-bed. This has been accomplished by increasing manipulator capabilities and efficiencies through both design changes and tool and end effector development. A software development effort has expanded the operational capabilities of the LSMS test-bed to include; autonomous operations based on stored paths, use of a vision system for target acquisition and tracking, and remote command and control over a communications bridge.

Dorsey, John T.↗

Cursor Control Device Test Battery

The test battery was developed to provide a standard procedure for cursor control device evaluation. The software was built in Visual Basic and consists of nine tasks and a main menu that integrates the set-up of the tasks. The tasks can be used individually, or in a series defined in the main menu. Task 1, the Unidirectional Pointing Task, tests the speed and accuracy of clicking on targets. Two rectangles with an adjustable width and adjustable center- to-center distance are presented. The task is to click back and forth between the two rectangles. Clicks outside of the rectangles are recorded as errors. Task 2, Multidirectional Pointing Task, measures speed and accuracy of clicking on targets approached from different angles. Twenty-five numbered squares of adjustable width are arranged around an adjustable diameter circle. The task is to point and click on the numbered squares (placed on opposite sides of the circle) in consecutive order. Clicks outside of the squares are recorded as errors. Task 3, Unidirectional (horizontal) Dragging Task, is similar to dragging a file into a folder on a computer desktop. Task 3 requires dragging a square of adjustable width from one rectangle and dropping it into another. The width of each rectangle is adjustable, as well as the distance between the two rectangles. Dropping the square outside of the rectangles is recorded as an error. Task 4, Unidirectional Path Following, is similar to Task 3. The task is to drag a square through a tunnel consisting of two lines. The size of the square and the width of the tunnel are adjustable. If the square touches any of the lines, it is counted as an error and the task is restarted. Task 5, Text Selection, involves clicking on a Start button, and then moving directly to the underlined portion of the displayed text and highlighting it. The pointing distance to the text is adjustable, as well as the to-be-selected font size and the underlined character length. If the selection does not include all of the underlined characters, or includes non-underlined characters, it is recorded as an error. Task 6, Multi-size and Multi-distance Pointing, presents the participant with 24 consecutively numbered buttons of different sizes (63 to 163 pixels), and at different distances (60 to 80 pixels) from the Start button. The task is to click on the Start button, and then move directly to, and click on, each numbered target button in consecutive order. Clicks outside of the target area are errors. Task 7, Standard Interface Elements Task, involves interacting with standard interface elements as instructed in written procedures, including: drop-down menus, sliders, text boxes, radio buttons, and check boxes. Task completion time is recorded. In Task 8, a circular track is presented with a disc in it at the top. Track width and disc size are adjustable. The task is to move the disc with circular motion within the path without touching the boundaries of the track. Time and errors are recorded. Task 9 is a discrete task that allows evaluation of discrete cursor control devices that tab from target to target, such as a castle switch. The task is to follow a predefined path and to click on the yellow targets along the path.

Kritina Holden↗

UAVSAR: A New NASA Airborne SAR System for Science and Technology Research

NASA's Jet Propulsion Laboratory is currently building a reconfigurable, polarimetric L-band synthetic aperture radar (SAR), specifically designed to acquire airborne repeat track SAR data for differential interferometric measurements. Differentian interferometry can provide key deformation measurements, important for studies of earthquakes, volcanoes and other dynamically changing phenomena. Using precision real-time GPS and a sensor controlled flight management system, the system will be able to fly predefined paths with great precision. The expected performance of the flight control system will constrain the flight path to be within a 10 m diameter tube about the desired flight track. The radar will be designed to be operable on a UAV (Unpiloted Aria1 Vehicle) but will initially be demonstrated on a NASA Gulfstream III. The radar will be fully polarimetric, with a range bandwidth of 80 MHz (2 m range resolution), and will support a 16 km range swath. The antenna will be electronically steered along track to assure that the antenna beam can be directed independently, regardless of the wind direction and speed. Other features supported by the antenna include elevation monopulse and pulse-to-pulse re-steering capabilities that will enable some novel modes of operation. The system will nominally operate at 45,000 ft (13800 m). The program began as an Instrument Incubator Project (IIP) funded by NASA Earth Science and Technology Office (ESTO).

synthetic aperture radar (SAR)↗

On the use of off-nadir pointing for increased temporal resolution of Earth observing satellite systems

The change in radiance expected at a satellite in a LANDSAT type orbit by pointing the sensor across track was examined with simulated data. The simulation incorporated the bidirectional reflectance distribution function of a spherical geometry grass canopy and scattering under clear, light haze and heavy haze atmospheric conditions. The results indicate that if the sensor pointed up to + or - 37 deg off nadir (up to three tracks east and west) through a clear atmosphere, between 50% and 75% of the orbital path between 60 deg N and 60 deg S would have two or more off-nadir views within + or - 5% of nadir. Although increased atmospheric scattering causes large variations in across track radiance, it appears possible, using various combinations of views depending on atmospheric conditions, that at least two views could be obtained with radiances within + or - 5% of each other over atmospheric visibilities from 23 km to 4 km.

Schnetzler, C. C.↗

Status of a UAVSAR designed for repeat pass interferometry for deformation measurements

NASA's Jet Propulsion Laboratory is currently implementing a reconfigurable polarimetric L-band synthetic aperture radar (SAR), specifically designed to acquire airborne repeat track interferometric (RTI) SAR data, also known as differential interferometric measurements. Differential interferometry can provide key deformation measurements, important for the scientific studies of Earthquakes and volcanoes. Using precision real-time GPS and a sensor controlled flight management system, the system will be able to fly predefined paths with great precision. The expected performance of the flight control system will constrain the flight path to be within a 10 m diameter tube about the desired flight track. The radar wilI be designed to operate on a UAV (Unpiloted Aria1 Vehicle) but will initially be demonstrated on a minimally piloted vehicle (MPV), such as the Proteus buitt by Scaled Composites or on a NASA Gulfstream III. The radar design is a fully polarimetric with an 80 MHz bandwidth (2 m range resolution) and 16 km range swath. The antenna is an electronically steered along track to assure that the actual antenna pointing can be controlled independent of the wind direction and speed. Other features supported by the antenna include an elevation monopulse option and a pulse-to-pulse resteering capability that will enable some novel modes of operation. The system will nominally operate at 45,000 ft (13800 m). The program began out as an Instrument Incubator Project (IIP) funded by NASA Earth Science and Technology Office (ESTO).

electronically scanned array↗

Integrating data types to estimate spatial patterns of avian migration across the Western Hemisphere

For many avian species, spatial migration patterns remain largely undescribed, especially across hemispheric extents. Recent advancements in tracking technologies and high-resolution species distribution models (i.e., eBird Status and Trends products) provide new insights into migratory bird movements and offer a promising opportunity for integrating independent data sources to describe avian migration. Here, we present a three-stage modeling framework for estimating spatial patterns of avian migration. First, we integrate tracking and band re-encounter data to quantify migratory connectivity, defined as the relative proportions of individuals migrating between breeding and nonbreeding regions. Next, we use estimated connectivity proportions along with eBird occurrence probabilities to produce probabilistic least-cost path (LCP) indices. In a final step, we use generalized additive mixed models (GAMMs) both to evaluate the ability of LCP indices to accurately predict (i.e., as a covariate) observed locations derived from tracking and band re-encounter data sets versus pseudo-absence locations during migratory periods and to create a fully integrated (i.e., eBird occurrence, LCP, and tracking/band re-encounter data) spatial prediction index for mapping species-specific seasonal migrations. To illustrate this approach, we apply this framework to describe seasonal migrations of 12 bird species across the Western Hemisphere during pre- and postbreeding migratory periods (i.e., spring and fall, respectively). We found that including LCP indices with eBird occurrence in GAMMs generally improved the ability to accurately predict observed migratory locations compared to models with eBird occurrence alone. Using three performance metrics, the eBird + LCP model demonstrated equivalent or superior fit relative to the eBird-only model for 22 of 24 species–season GAMMs. In particular, the integrated index filled in spatial gaps for species with over-water movements and those that migrated over land where there were few eBird sightings and, thus, low predictive ability of eBird occurrence probabilities (e.g., Amazonian rainforest in South America). This methodology of combining individual-based seasonal movement data with temporally dynamic species distribution models provides a comprehensive approach to integrating multiple data types to describe broad-scale spatial patterns of animal movement. Further development and customization of this approach will continue to advance knowledge about the full annual cycle and conservation of migratory birds.

59 BASIC BIOLOGICAL SCIENCES↗

Generalized Predictive Control of Dynamic Systems with Rigid-Body Modes

Numerical simulations to assess the effectiveness of Generalized Predictive Control (GPC) for active control of dynamic systems having rigid-body modes are presented. GPC is a linear, time-invariant, multi-input/multi-output predictive control method that uses an ARX model to characterize the system and to design the controller. Although the method can accommodate both embedded (implicit) and explicit feedforward paths for incorporation of disturbance effects, only the case of embedded feedforward in which the disturbances are assumed to be unknown is considered here. Results from numerical simulations using mathematical models of both a free-free three-degree-of-freedom mass-spring-dashpot system and the XV-15 tiltrotor research aircraft are presented. In regulation mode operation, which calls for zero system response in the presence of disturbances, the simulations showed reductions of nearly 100%. In tracking mode operations, where the system is commanded to follow a specified path, the GPC controllers produced the desired responses, even in the presence of disturbances.

Kvaternik, Raymond G.↗

Trajectory specification for high capacity air traffic control

Method and system for analyzing and processing information on one or more aircraft flight paths, using a four-dimensional coordinate system including three Cartesian or equivalent coordinates (x, y, z) and a fourth coordinate .delta. that corresponds to a distance estimated along a reference flight path to a nearest reference path location corresponding to a present location of the aircraft. Use of the coordinate .delta., rather than elapsed time t, avoids coupling of along-track error into aircraft altitude and reduces effects of errors on an aircraft landing site. Along-track, cross-track and/or altitude errors are estimated and compared with a permitted error bounding space surrounding the reference flight path.

Paielli, Russell A.↗

Tracking radar techniques for studying migratory birds

The use of NASA tracking radar at Wallops Island and the islands of Bermuda and Antigua to plot the paths of migatory birds in three dimensional space is discussed. Attempts were also made to obtain data on the direction, speed, and density of large numbers of migrating birds. Observational results show that the performance of tracking radars vary considerably with the density of bird migration. At light to moderate levels of migration it is possible to obtain tracks of a variety of types of targets, both large and small. During heavy periods of migration the sky is so filled with targets, that only the largest targets can be tracked for more than a few minutes.

Williams, T. C.↗