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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 235 records · Page 13
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Cooperative Research and Development Agreement With Georgetown University Report: National Institutes of Health, National Center for Advancing Translational Sciences Clinical and Translational Science Award

Oak Ridge National Laboratory (ORNL) is participating with Georgetown University (GU) as a subrecipient in response to the National Institutes of Health (NIH), National Center for Advancing Translational Sciences (NCATS) Clinical and Translational Science Award (CTSA) (U54 Clinical Trial Optional) funding opportunity announcement. This Cooperative Research and Development Agreement is put in to place to facilitate the development and implementation of clinical interventions that demonstrably improve human health is currently a complex, recursive, and inefficient process that leads to delays of years or decades before discoveries in biomedical research result in health benefits for patients and communities. NCATS conducts and supports research in the science of translation, to discover the mechanistic and operational principles of the intervention development and dissemination process, thereby providing the scientific foundation for improvements in translational efficiency that will accelerate the realization of interventions that improve human health. Under NCATS’ leadership, the CTSA Program supports a national network of medical research institutions called hubs. GU is the lead institution in one of the NIH hubs that was created as a result of a previous NIH CTSA. The missions of the GU have historically included the advancement of health through research in the clinical and biomedical sciences, the education of future leaders in medical and nursing practice and academia, and the provision of compassionate and scientifically competent patient care and service to the Washington, DC community and the nation. GU is the lead institution for the Georgetown-Howard Universities Center for Clinical and Translational Science (GHUCCTS), a multi-institutional partnership of medical research institutions forged from a desire to promote clinical research and translational science. Through multiple collaborations among these institutions, GHUCCTS is transforming clinical research and translational science in order to bring new scientific advances to health care. Oak Ridge National Laboratory is the Department of Energy's (DOE) largest science and energy laboratory. Managed since April 2000 by a partnership of the University of Tennessee and Battelle, ORNL was established in 1943 as a part of the secret Manhattan Project to pioneer a method for producing and separating plutonium. During the 1950s and 1960s, ORNL became an international center for the study of nuclear energy and related research in the physical and life sciences. With the creation of DOE in the 1970s, ORNL's mission broadened to include a variety of energy technologies and strategies. Today the laboratory supports the nation with a peacetime science and technology mission that is just as important as, but very different from, its role during the Manhattan Project. ORNL is home to the world's premier center for high performance supercomputing to enable scientific discovery. ORNL has extensive expertise in various areas of computer science that are uniquely situated to support GU. Additionally, ORNL’s leading computational user facilities present a unique opportunity to leverage the largest scale machines for open science in support of the stated mission of the NCATS CTSA. ORNL's partnership with GU will offer unparalleled opportunity in data analytics, deep-learning, artificial intelligence, and urban dynamics.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Higher Throughput, Lower Cost Processing of Flexible Perovskite Solar Cells by Photonic Curing

The objectives of this SETO project are to explore whether photonic curing can be used to perform annealing in perovskite solar cell (PSC) fabrication, and if so, whether it can enable high-throughput PSC manufacturing. The successful outcome of the project will reduce manufacturing cost towards realizing the SETO goal of the Levelized cost of electricity (LCOE) $0.03/kWh by 2030. The project is a collaboration between Hsu’s group at the University of Texas at Dallas (UTD) and NovaCentrix, an Austin TX based company that pioneered the PulseForge® photonic curing tools and has expertise in applying this technology to printed electronics. Thin-film synthesis typically involves a thermal annealing step to convert from precursors to final material phases, to obtain the desired crystalline phase, or to improve materials structural or electrical properties. However, thermal annealing typically requires high temperatures that are incompatible with inexpensive plastic substrates and annealing times lasting tens-to-hundreds of minutes, making it incompatible with roll-to-roll (R2R) manufacturing at a desirable web speed. Photonic curing uses a flash Xe lamp to deliver short (20 µs to 100 ms) but high intensity (up to 50 kW/cm 2 ) pulses of broadband light (200 – 1500 nm) to the sample. It has been successfully applied to sinter printed metal nanoparticle inks into conductive patterns. This project aimed to extend the applications of photonic curing to convert halide perovskite films and transparent metal oxide transport layers. Despite the interruption by COVID-19, we have achieved significant accomplishments to establish photonic curing as a viable technology for the high-throughput manufacturing of PSCs. (1) We demonstrated that photonic curing can convert both metal oxide transport layer and halide perovskite absorber in the PSCs and successfully made flexible PSCs on Corning Willow glass® (WG)/ indium tin oxide (ITO) substrates without any thermal annealing steps. These photonically cured devices achieve performance comparable to conventional thermally annealed devices but were fabricated with a total processing time reduced by six orders of magnitude. We also show that photonic curing can achieve desirable web speed (up to 26 m/min) and large-area uniformity. (2) By establishing photonic curing processing phase spaces for the perovskite, we show that the longer pulses are more forgiving in small variation in the photonic curing conditions, making it more suitable for R2R manufacturing. (3) Our results clearly illustrated the importance of improving mechanical and optical properties of transparent electrodes on flexible substrates. (4) We also performed fundamental studies that elucidate the interactions between perovskite absorber and metal oxide transport layer that can undermine the PSC stability. Five refereed journal papers in top journals (ACS Energy Letters, npj Flexible Electronics, ACS Applied Energy Materials, Materials Advances, and Frontiers in Energy Research), one conference proceeding (PVSC-47), six conference presentations (PVSC and Materials Research Society meetings), and a Ph.D. dissertation (Trey B. Daunis) were produced under this project. Energy Materials Corporation (EMC) has forecast that with a 1.5 m wide web moving at a web speed of 30 m/min, R2R processing of PSC could provide up to 4 GW/year for a single R2R assembly line. Replacing thermal annealing with photonic curing, as demonstrated by the accomplishments of this project, is necessary to realize such an energy production goal.

14 SOLAR ENERGY↗
DOE OSTI2021

Integrated parameter and process learning for hydrologic and biogeochemical modules in Earth System Models

Focus area: Primary focal area #2; secondary focal area #3: Learning about parameters and processes of land surface hydrologic and biogeochemical models in Earth System models by integrating machine learning, physics, and big data. Science challenges: How do we maximally leverage big-data observations to improve hydrobiogeochemical process description and parameterization so that such modules more realistically capture hydrologic and vegetation responses and feedbacks under the future climate? For example, how can we leverage physics, limited observations of vegetation and streamflow to better estimate evapotranspiration, and, relatedly, net primary productivity, especially for drought areas? Vegetation plays a critical role in regional and global water cycles; however, existing vegetation models have failed to predict vegetation response to droughts (McDowell & Xu, 2017) , arctic greening (Keenan & Riley, 2018) , and critical transitions between forest and savanna (Hirota et al., 2011) . These studies suggest that when we build process-based models (PBM) parameterized from regional and global plant traits, we tend to poorly describe plant adaptation and local-scale competition processes. The models and their associated parameters assigned for different regions in the world are not capturing essential heterogeneity in vegetation responses at finer spatial scales. Many parameters of the land surface models control hydrology and vegetation dynamics at the same time. The heterogeneity in vegetation response is a function of (i) plant type, (ii) plant size, (iii) competition and succession, (iv) environmental controls, and (v) local variations due to the unique ecological community that are very difficult to describe (e.g., the size of gaps resulting from fire that facilitated the coexistence of pioneering species). In the demographic models, only factors (i) and (iv) were captured, and plant types were generally described only by leaf phenology and climate zones. With current demographic models, we generally consider more traits to define plant types (i) and calibrate these traits to consider factors (ii), (iii) and (iv); however, it is substantially challenging to scale to regional and global simulations due to trait variations across space (Ali et al., 2016). Moreover, it has been noted that hillslope processes, including ridge-to-valley flow and sunny vs. shady slopes are primary organizers of water, energy, and vegetation (Clark et al., 2015; Fan et al., 2019) . Although gradual improvements in the hydrologic model component in earth system models may reduce this error (at a remarkably slow pace), the long-term, gradual impact of hydrology on plant traits are not well captured. Recent work showed that the hydrologic controls exerted by groundwater and lateral flow are primary regulators of rooting depth (Fan et al., 2017) . Such hydrologic controls have seldom been reflected in vegetation model parameterizations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

PV CAMPER Annual Report 30 December 2020

The objective of the Photovoltaic Collaborative to Advance Multi-climate and Performance Research (PVCAMPER) is to: 1) Build and maintain a multi-climate research platform to enable pioneering photovoltaic research; 2) Validate the performance of emerging technologies in specific climates; 3) Help accelerate the world’s transition to a solar-intensive economy. Our focus in achieving those goals is to foster collaborative research and to build an international organization dedicated to improving data quality, minimizing measurement uncertainty and exchanging best practices related to PV performance.

14 SOLAR ENERGY↗
DOE OSTI2020

Weak lensing in DES Y3: redshift distributions, shape catalogue, and mass mapping

The size of galaxy surveys have rapidly escalated with time, growing from thousands of galaxies of the first pioneering surveys to current and future surveys (DES, KiDS, HSC, LSST, Euclid, WFIRST), which map (or plan to map) a few hundreds millions of galaxies. These ambitious programs have the potential to answer many open questions in Cosmology (or, depending on their results, to open new exciting scenarios, involving new physics beyond the standard cosmological model and the standard model of particle physics). In particular, this thesis focuses on the first three years of data from the Dark Energy Survey (DES Y3), which comprises 100 million galaxies observed in 5 different optical bands over 5000 square degrees of the southern hemisphere. DES and the data set used in this thesis are discussed in detail in Chapter 3, which together with Chapter 1 and 2 constitutes Part I of this thesis. The scientifically positive outcome of DES and other photometric galaxy surveys goes h and in h and with a supreme understanding of the data, of the observational systematics affecting the measurements, and of the limits of the theoretical modelling of the observables. One of the main challenge of galaxy photometric surveys like DES is to correctly estimate the distance to the galaxies. Photometric surveys observe the galaxies in a limited number of broad optical bands, and the estimate of their \textit{redshifts} is somewhat uncertain, which constitutes one of the main limiting factor of their cosmological analyses. Part II and its Chapter 4 are devoted to a new auxiliary technique recently developed that allows to infer (or calibrate) redshift distributions exploiting cross-correlation with small reference samples with secure redshifts. The so called ``clustering-redshift'' method is discussed in depth, as well as its role in the overall DES Y3 redshift calibration strategy. Part III and Chapter 5 are devoted to another key aspect of photometric surveys, that enables the stu dy of weak gravitational lensing: the shape catalogue. The official DES Y3 shape catalogue is presented, together with all the systematic tests performed to validate it such that it can be considered science-ready. Last, part IV focuses on how to use weak gravitational lensing and the DES Y3 shape catalogue to create weak lensing mass maps, i.e., maps of the mass distribution of the Universe. Chapter 6 discusses different map making techniques, whereas Chapter 7 presents a simulated cosmological analysis using the high order moments of the mass maps.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Betty Perkins: A giant in nuclear weapons research Reports amassed after testing ban are vital to today’s work

Today’s nuclear weapons research builds upon the work of the past, often on the shoulders of the giants of nuclear document preservation in the absence of testing. One of these giants is weapons historian Betty Perkins. Before her retirement in 2016, Perkins held numerous roles at LANL, but she is best known for her pioneering work in the Weapons Program where she generated classified reports on nuclear weapons design and development. Over many years, she meticulously researched and recorded the histories of a number of critical efforts in Los Alamos’s nuclear weapons program, culminating in 13 reports comprising more than 7,200 pages.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗
DOE OSTI2021

DEVELOPMENT OF A 25 MWTH FLAMELESS PRESSURIZED OXY-COMBUSTION PILOT

The Flameless Pressurized Oxy-Combustion (FPO) cycle, a novel flexible fuel technology, is being developed into a large pilot. This effort seeks to complete the preliminary engineering and planning of a 25 MWth Pilot Plant that will demonstrate the technology for scale-up to a commercial unit. The technology, pioneered by ITEA at the 5 MWth scale, must be brought to a higher technology readiness level (TRL) to be viable at the commercial scale. The 25 MWth pilot cycle was optimized for cost and technology development and demonstration. Preliminary drawings, layouts, and plans were defined. Process flow diagrams were used to describe the pilot configuration in greater detail. A heat and mass balance with stream data was created. A master equipment list specified the operating conditions for major pieces of equipment within the pilot using this heat and mass balance. The 25 MWth FPO pilot is assessed for environmental performance. A test campaign is developed to assess the type of test and number of hours required for pilot demonstration. The environmental performance is compared against projected performance at the commercial scale. This project builds upon extensive evaluation of the techno-economic performance of the FPO technology already performed by ITEA. This includes system improvements, such as the addition of a turbo-expander to the flue gas stream. Some of the performance-enhancing components are not as well defined as others. The primary goal of this effort was to bring all of the core cycle components to the same level of design maturity. A techno-economic assessment (TEA) evaluated the FPO technology at the commercial scale in comparison to the NETL baseline cases. The reference plants were used in combination with proprietary equipment estimates to build a plant capital cost and cost of electricity evaluation. FPO performed better than the sub-bituminous post-combustion capture cases. Further preliminary estimates of improvements to the FPO cycle show even further gains when compared to conventional carbon capture methods.

20 FOSSIL-FUELED POWER PLANTS↗
DOE OSTI2021

Functionalized Cellular Magmatics

We are pioneering the development of fundamental and applied research related to engineered cellular magmatics (ECM) technology. Over the course of our first year, we developed the methodology and measured the effects of various additives on ECM properties. We demonstrated the ability to control the phase and morphology of post-process secondary minerals on ECMs based on starting conditions and compositions. Both achievements are critical to advancing the use of ECMs for applications such as water filtration and runoff remediation. We established the ability to grow various microbiologic consortia on ECM surfaces as well as a process that allows industrial scaling of the technology for rapid field deployment in applications such as the cleanup of fossil fuel contamination. Furthermore, this biotechnology also has potential application in the nascent fields of biomining of precious metals and bioremediation of toxic heavy metals.

36 MATERIALS SCIENCE↗
DOE OSTI2021

On-Device Lead Detention for Perovskite Solar Cells

As the power conversion efficiency (PCE) of perovskite solar cells (PSCs) have reached above 25.5%, the commercialization of PSCs appears to be imminent due to its lower fabrication cost, simpler manufacturing processes, and larger processing area over Si-based solar cells that dominate the current photovoltaic (PV) market. While many efforts have focused on tackling the stability and scalability issues with promising advances, the potential lead (Pb) toxicity issue has remained a concern of PSCs. Unlike the metallic Pb, the Pb 2+ in perovskite generally exhibit high solubility in water. However, Pb 2+ has so far appeared to be a necessary component in all high-efficiency PSCs. Handful methods have been explored to mitigate the potential Pb2+ leaking issue, which can be generally categorized as physical encapsulation and our pioneering chemical absorption method, which was extended by others later. Since device damage is inevitable in outdoor conditions, physical encapsulation alone is not sufficient to mitigate the long-term risk of leakage of soluble Pb 2+ to the environment under severe weather conditions. As a result, the chemical absorption approach has recently attracted significant attention as a more effective solution to confine the potential lead leakage. Hence, it is of great value to develop durable and highly efficient Pb-absorbing components that can be conveniently mounted onto the standard PSC stack as an add-on accessory in line with the encapsulation of PSCs instead of modifying the standard device fabrication and/or device configuration.

14 SOLAR ENERGY↗
DOE OSTI2022

2022 Agnew and Metropolis Postdoc Fellow Showcase Event Book

Agnew National Security Postdoc Fellows pursue cutting-edge experimental, theoretical, computational science, and engineering research aligned with the national security mission. Metropolis Postdoc Fellows pursue cutting-edge research in the areas of computational and computer science, physics, and engineering. Computer simulation capabilities are developed in support of the stockpile stewardship program together with broader national nuclear security needs. Fellows have access to some of the most powerful supercomputers in the world to perform pioneering research.

42 ENGINEERING↗
DOE OSTI2023

Advanced Photon Acceleration Schemes for Tunable XUV/Soft X-Ray Sources

We report on the advances made under the purview of DOE award number DE-SC0019135 that was active during the period: 09/01/2018–08/31/2021. The grant investigated the application of a “flying focus” to the problem of photon acceleration—in which a dynamic refractive index gradient is used to continuously upshift a probe beam’s frequency. Codes were written to describe the creation of ionization waves of arbitrary velocity (IWAVs) for use as a photon-accelerating medium, as well as the behavior of a witness pulse residing in said medium. Experiments first verified the spatiotemporal control over laser intensity provided by a chromatic flying focus, then used that ability to produce small-diameter IWAVs in the far-field with the expected dynamics, and finally demonstrated even further flexibility by producing large-diameter IWAVs in the laser quasi-far-field that maintained the beneficial dynamics. Multiple innovative diagnostics—spectrally resolved Schlieren and spectrally resolved interferometry—were pioneered in order to diagnose the IWAVs. For IWAV production in the laboratory, however, beam quality was identified as a key limitation in the quasi-far-field. Since the original chromatic flying focus was found to result in relatively long (ps duration) intensity peaks, which could limit some applications including photon acceleration, additional techniques were invented to provide similar spatiotemporal control while also retaining ultrashort intensity peaks. While simulations have identified several interesting regimes for photon acceleration—first predicting the upshift of a counterpropagating witness pulse from the optical to the extreme ultraviolet in less than 1 cm, and later obtaining similar shifts in less than 100 μm in a simpler self-seeded configuration—experimental demonstration is left for future work.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

The 70th Anniversary of the MANIAC at Los Alamos

March 2022 is the 70th anniversary of the MANIAC, the first fully electronic computer at Los Alamos. The MANIAC was constructed when electronic computing and its associated industry were still in their infancy. Early computer centers like Los Alamos had to build their own systems and invent the methods for using them. This pioneering effort gave Los Alamos and the few places like it an outsized influence on the emerging electronic computing field, shaping the computing technologies and methods we experience today. This report highlights the history of the MANIAC and "recalls the hard work and ingenuity of the people at Los Alamos who helped to invent the modern field of scientific computing, using vacuum tubes and paper tape to build the Lab’s continuing computing legacy."

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2022

In Situ Thermodynamics and Kinetics of Mixed-Valence Inorganic Crystal Formation

We have found that the established methods to discover and produce earth-abundant iron-containing active layers are very inefficient. The prospective new material iron silicon sulfide, Fe 2 SiS 4 , was previously only synthesized by slow reactions of metallic iron, silicon, and sulfur powders, resulting in poor yield. We found that using an ordered iron-silicon alloy as a feedstock results in a much faster reaction at a lower temperature. We could track this reaction using our unique in-situ X-ray diffractometer, which allows us to heat our encapsulated material up to 1000°C while providing a simultaneous picture of how the atoms in the structure rearrange. We are using this powerful new technique to search for new active layers and optimize their formation by creative use of more complex reagents. Our key accomplishments are mechanisms for improving synthesis, and new materials that result from them. We have demonstrated the utility of high-throughput, DOE-developed infrastructure, such as the Materials Project, to accelerate materials discovery and synthesis. We have pioneered new capabilities of user facilities, such as beamlines 6-BM, 17-BM, and 11-BM at the Advanced Photon Source (APS) and POWGEN and NOMAD at the Spallation Neutron Source.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Advanced Integrated Reticular Sorbent-Coated System to Capture CO 2 from the Atmosphere (AIR2CO2)

GE Research Center (GRC) and the University of California, Berkeley (UCB) executed an 15-month, $1.0 MM program to develop a lab-scale material system to extract CO 2 from ambient air using UCB’s pioneering sorbent technology and GRC’s composite coating expertise. The primary objective of this project was to develop an “Advanced Integrated Reticular Sorbent-Coated System to Capture CO 2 from the Atmosphere (AIR2CO2)” at a Technology Readiness Level (TRL) of 3. The AIR2CO2 concept relies on two key innovations: 1) advanced sorbent architectures with high capacity and rapid sorption kinetics that enable effective CO 2 capture at low concentrations, and 2) tailored MOF-binder slurry formulations and coating processes that enable sorbent integration into a novel additively-manufactured contactor.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Synthesis and Characterization of Silicon Carbide Ceramic Composites with CeO 2 Powder

This study pioneers the fabrication and characterization of silicon carbide (SiC) containing cerium dioxide (CeO 2 ). CeO 2 powder was tested as a surrogate for actinide oxide waste forms such as uranium dioxide (UO 2 ) and plutonium dioxide (PuO 2 ). Several syntheses were evaluated with varying amounts of preceramic polymer (SMP-10 resin) and CeO 2 containing either SiC fiber, carbon fiber, or no fibers. Scanning electron microscopy (SEM) was used to characterize morphology and compositional differences, and energy-dispersive x-ray spectroscopy (EDS) was used to provide semiquantitative elemental analysis. In addition, each sample was characterized by density, powder x-ray diffraction (pXRD), and Raman spectroscopy. Samples containing nearly more than four times CeO 2 powder than SMP-10 resin by mass had the best properties. This research establishes a unique synthesis for SiC containing high concentrations of CeO 2 powder to illustrate how it may be managed as a potential waste form.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2022

Programming Function via Soft Materials (PFvSM) (Final Report)

The PFvSM cluster at the University of Illinois greatly deepened the science of soft materials and expanded the means for embedding within them unprecedented functionalities. We pioneered a mesoscopic approach to materials design that combined leading competencies in fundamental experimental and theoretical soft matter science and fabrication that powerfully establishes equilibrium and nonequilibrium assembly of novel and complex building blocks as a preeminent contributor to progress in materials chemistry. Our cluster’s vision was an integrated program of work centered on soft matter science with the ultimate goal of impacting important energy technologies. As elementary units we employed function-encoded colloids, nanoparticles, large mesh fibrillar gels, deterministically fabricated networks and hybrid objects. These materials were employed as building blocks for diverse model systems that allowed fundamental soft matter principles of wide relevance to be established. Their assembly into materials with useful functional behavior provided new approaches to challenging problems in basic energy science including energy harvesting, transport and storage. To achieve these goals the cluster brought together a team of recognized world-leaders in materials synthesis and processing, in-situ characterization, theory and modeling, and materials design, integration and fabrication

36 MATERIALS SCIENCE↗
DOE OSTI2022

Biopolymer Modified Cementitious Systems with Radically Superior Strength and Durability

This project was a pioneering study of the effect of nanochitin additives on setting time, rheological, and mechanical properties of cementitious materials. Chitin is the second most abundant biopolymer in nature after cellulose and is readily available from byproducts of the growing seafood industry. In this study, chitin powder from shrimp shells was processed into chitin nanocrystals (ChNCs) and chitin nanofibers (ChNFs). Ch-Cs delayed initial and final set times with their high ionic surface charges likely by electrostatic repulsion. The viscosity of fresh cement paste increased with Ch-NFs, while Ch-NCs did not significantly affect rheological properties. The distinct effects of the two nanochitin forms are attributed to the mobility of the different morphologies of the rod-like ChNCs vs. the entangled and restrained network of the ChNFs. Nanochitin forms showed encouraging results by significantly increasing flexural strength by ~40% at the optimum concentration of 0.05 wt% and significant increases in fracture energy. These bio-additives were found promising and future studies should continue to evaluate their use in concrete.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Combined Imaging and RNA-Seq on a Microfluidic Platform for Viral Infection Studies

The goal of this work was to pioneer a novel, low-overhead protocol for simultaneously assaying cell-surface markers and intracellular gene expression in a single mammalian cell. The purpose of developing such a method is to be able to understand the mechanisms by which pathogens engage with individual mammalian cells, depending on their cell surface proteins, and how both host and pathogen gene expression changes are reflective of these mechanisms. The knowledge gained from such analyses of single cells will ultimately lead to more robust pathogen detection and countermeasures. Our method was aimed at streamlining both the upstream cell sample preparation using microfluidic methods, as well as the actual library making protocol. Specifically, we wanted to implement a random hexamer-based reverse transcription of all RNA within a single cell (as opposed to oligo dT-based which would only capture polyadenylated transcripts), and then use a CRISPR-based method called scDash to deplete ribosomal DNAs (since ribosomal RNAs make up the majority of the RNA in a mammalian cell). After significant troubleshooting, we demonstrate that we are able to prepare cDNA from RNA using the random hexamer primer, and perform the rDNA depletion. We also show that we can visualize individually stained cells, setting up the pipeline for connecting surface markers to RNA-sequencing profiles. Finally, we test a number of devices for various parts of the pipeline, including bead generation, optical barcoding and cell dispensing, and demonstrate that while some of these have potential, more work is needed to optimize this part of the pipeline.

59 BASIC BIOLOGICAL SCIENCES↗