Search NASA⌕ Search

SEARCH · Search NASA

Results for “Sequence Function Data”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 235 records · Page 13
All sourcesNASA NTRSDOE OSTI
NASA NTRS2012

Irreducible Tests for Space Mission Sequencing Software

As missions extend further into space, the modeling and simulation of their every action and instruction becomes critical. The greater the distance between Earth and the spacecraft, the smaller the window for communication becomes. Therefore, through modeling and simulating the planned operations, the most efficient sequence of commands can be sent to the spacecraft. The Space Mission Sequencing Software is being developed as the next generation of sequencing software to ensure the most efficient communication to interplanetary and deep space mission spacecraft. Aside from efficiency, the software also checks to make sure that communication during a specified time is even possible, meaning that there is not a planet or moon preventing reception of a signal from Earth or that two opposing commands are being given simultaneously. In this way, the software not only models the proposed instructions to the spacecraft, but also validates the commands as well.To ensure that all spacecraft communications are sequenced properly, a timeline is used to structure the data. The created timelines are immutable and once data is as-signed to a timeline, it shall never be deleted nor renamed. This is to prevent the need for storing and filing the timelines for use by other programs. Several types of timelines can be created to accommodate different types of communications (activities, measurements, commands, states, events). Each of these timeline types requires specific parameters and all have options for additional parameters if needed. With so many combinations of parameters available, the robustness and stability of the software is a necessity. Therefore a baseline must be established to ensure the full functionality of the software and it is here where the irreducible tests come into use.

sequencing test↗
NASA NTRS1997

Design of Neural Networks for Fast Convergence and Accuracy: Dynamics and Control

A procedure for the design and training of artificial neural networks, used for rapid and efficient controls and dynamics design and analysis for flexible space systems, has been developed. Artificial neural networks are employed, such that once properly trained, they provide a means of evaluating the impact of design changes rapidly. Specifically, two-layer feedforward neural networks are designed to approximate the functional relationship between the component/spacecraft design changes and measures of its performance or nonlinear dynamics of the system/components. A training algorithm, based on statistical sampling theory, is presented, which guarantees that the trained networks provide a designer-specified degree of accuracy in mapping the functional relationship. Within each iteration of this statistical-based algorithm, a sequential design algorithm is used for the design and training of the feedforward network to provide rapid convergence to the network goals. Here, at each sequence a new network is trained to minimize the error of previous network. The proposed method should work for applications wherein an arbitrary large source of training data can be generated. Two numerical examples are performed on a spacecraft application in order to demonstrate the feasibility of the proposed approach.

Maghami, Peiman G.↗
NASA NTRS2001

Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence

BACKGROUND: Three types of molecular motors play an important role in the organization, dynamics and transport processes associated with the cytoskeleton. The myosin family of molecular motors move cargo on actin filaments, whereas kinesin and dynein motors move cargo along microtubules. These motors have been highly characterized in non-plant systems and information is becoming available about plant motors. The actin cytoskeleton in plants has been shown to be involved in processes such as transportation, signaling, cell division, cytoplasmic streaming and morphogenesis. The role of myosin in these processes has been established in a few cases but many questions remain to be answered about the number, types and roles of myosins in plants. RESULTS: Using the motor domain of an Arabidopsis myosin we identified 17 myosin sequences in the Arabidopsis genome. Phylogenetic analysis of the Arabidopsis myosins with non-plant and plant myosins revealed that all the Arabidopsis myosins and other plant myosins fall into two groups - class VIII and class XI. These groups contain exclusively plant or algal myosins with no animal or fungal myosins. Exon/intron data suggest that the myosins are highly conserved and that some may be a result of gene duplication. CONCLUSIONS: Plant myosins are unlike myosins from any other organisms except algae. As a percentage of the total gene number, the number of myosins is small overall in Arabidopsis compared with the other sequenced eukaryotic genomes. There are, however, a large number of class XI myosins. The function of each myosin has yet to be determined.

NASA Discipline Plant Biology↗
NASA NTRS1992

Mesh generation/refinement using fractal concepts and iterated function systems

A novel method of mesh generation is proposed which is based on the use of fractal concepts to derive contractive, affine transformations. The transformations are constructed in such a manner that the attractors of the resulting maps are a union of the points, lines and surfaces in the domain. In particular, the mesh nodes may be generated recursively as a sequence of points which are obtained by applying the transformations to a coarse background mesh constructed from the given boundary data. A Delaunay triangulation or similar edge connection approach can then be performed on the resulting set of nodes in order to generate the mesh. Local refinement of an existing mesh can also be performed using the procedure. The method is easily extended to three dimensions, in which case the Delaunay triangulation is replaced by an analogous 3D tesselation.

Bova, S. W.↗
NASA NTRS1994

(abstract) Pluto Integrated Camera-Spectrometer (PICS): a Low Mass, Low Power Instrument for Planetary Exploration

The concept we describe is an integrated instrument (a Pluto Integrated Camera-Spectrometer -- PICS) that will perform the functions of all three optical instruments required by the Pluto Fast Flyby Mission: the near-IR spectrometer, the camera, and the UV spectrometer. This integrated approach minimizes mass and power use. It also forced us early in the conceptual design to consider integrated observational sequences and integrated power management, thus ensuring compatible duty cycles (i.e., exposure times, readout rates) to meet the composite requirements for data collection, compression, and storage. Based on flight mission experience we believe that this integrated approach will result in substantial cost savings, both in reworking instrument designs during accommodation, as well as in sequence planning and integration. Finally, this integrated payload automatically yields a cohesive mission data set, optimized for correlative analysis. The presentation will provide details of the PICS instrument design and describe the fabrication and testing of the integrated SiC structure and optics at SSG Inc. Final integration and test plans for the prototype will also be described.

Pluto↗
NASA NTRS1978

Controlled cellular energy conversion in brown adipose tissue thermogenesis

Brown adipose tissue serves as a model system for nonshivering thermogenesis (NST) since a) it has as a primary physiological function the conversion of chemical energy to heat; and b) preliminary data from other tissues involved in NST (e.g., muscle) indicate that parallel mechanisms may be involved. Now that biochemical pathways have been proposed for brown fat thermogenesis, cellular models consistent with a thermodynamic representation can be formulated. Stated concisely, the thermogenic mechanism in a brown fat cell can be considered as an energy converter involving a sequence of cellular events controlled by signals over the autonomic nervous system. A thermodynamic description for NST is developed in terms of a nonisothermal system under steady-state conditions using network thermodynamics. Pathways simulated include mitochondrial ATP synthesis, a Na+/K+ membrane pump, and ionic diffusion through the adipocyte membrane.

Horowitz, J. M.↗
NASA NTRS1985

A Galerkin method for the estimation of parameters in hybrid systems governing the vibration of flexible beams with tip bodies

An approximation scheme is developed for the identification of hybrid systems describing the transverse vibrations of flexible beams with attached tip bodies. In particular, problems involving the estimation of functional parameters are considered. The identification problem is formulated as a least squares fit to data subject to the coupled system of partial and ordinary differential equations describing the transverse displacement of the beam and the motion of the tip bodies respectively. A cubic spline-based Galerkin method applied to the state equations in weak form and the discretization of the admissible parameter space yield a sequence of approximating finite dimensional identification problems. It is shown that each of the approximating problems admits a solution and that from the resulting sequence of optimal solutions a convergent subsequence can be extracted, the limit of which is a solution to the original identification problem. The approximating identification problems can be solved using standard techniques and readily available software.

Banks, H. T.↗
NASA NTRS2001

Molecular motors and their functions in plants

Molecular motors that hydrolyze ATP and use the derived energy to generate force are involved in a variety of diverse cellular functions. Genetic, biochemical, and cellular localization data have implicated motors in a variety of functions such as vesicle and organelle transport, cytoskeleton dynamics, morphogenesis, polarized growth, cell movements, spindle formation, chromosome movement, nuclear fusion, and signal transduction. In non-plant systems three families of molecular motors (kinesins, dyneins, and myosins) have been well characterized. These motors use microtubules (in the case of kinesines and dyneins) or actin filaments (in the case of myosins) as tracks to transport cargo materials intracellularly. During the last decade tremendous progress has been made in understanding the structure and function of various motors in animals. These studies are yielding interesting insights into the functions of molecular motors and the origin of different families of motors. Furthermore, the paradigm that motors bind cargo and move along cytoskeletal tracks does not explain the functions of some of the motors. Relatively little is known about the molecular motors and their roles in plants. In recent years, by using biochemical, cell biological, molecular, and genetic approaches a few molecular motors have been isolated and characterized from plants. These studies indicate that some of the motors in plants have novel features and regulatory mechanisms. The role of molecular motors in plant cell division, cell expansion, cytoplasmic streaming, cell-to-cell communication, membrane trafficking, and morphogenesis is beginning to be understood. Analyses of the Arabidopsis genome sequence database (51% of genome) with conserved motor domains of kinesin and myosin families indicates the presence of a large number (about 40) of molecular motors and the functions of many of these motors remain to be discovered. It is likely that many more motors with novel regulatory mechanisms that perform plant-specific functions are yet to be discovered. Although the identification of motors in plants, especially in Arabidopsis, is progressing at a rapid pace because of the ongoing plant genome sequencing projects, only a few plant motors have been characterized in any detail. Elucidation of function and regulation of this multitude of motors in a given species is going to be a challenging and exciting area of research in plant cell biology. Structural features of some plant motors suggest calcium, through calmodulin, is likely to play a key role in regulating the function of both microtubule- and actin-based motors in plants.

Non-NASA Center↗
NASA NTRS1972

The pseudonoise test set: Communication system's performance evaluation based upon RMS error testing

A pseudonoise (PN) test set was built to provide a relatively easy means of accurately determining the end-to-end rms error introduced by a communication system when subjected to wideband data. It utilizes a filtered pseudorandom sequence generator as a wideband data source, providing a convenient means for digitally delaying the input reference signal for comparison with the distorted test communication system output. In addition to providing a means to measure the end-to-end rms error and the average delay of a communication system, the PN test set also provides a means to determine the tested system's impulse response and correlation function. The theory of PN testing is discussed in detail along with the most difficult aspects of implementation, the building of matched filter pairs. Both analytical and empirical results are reported which support the contentions that this is an accurate and practical way to acquire figures of merit for complete communication systems.

Wallace, G. R.↗
NASA NTRS1974

Evaluation of S190A radiometric exposure test data

The S190A preflight radiometric exposure test data generated as part of preflight and system test of KM-002 Sequence 29 on flight camera S/N 002 was analyzed. The analysis was to determine camera system transmission using available data which included: (1) films exposed to a calibrated light source subject; (2) filter transmission data; (3) calibrated light source data; (4) density vs. log10 exposure curves for the films; and (5) spectral sensitometric data for the films. The procedure used is outlined, and includes the data and a transmission matrix as a function of field position for nine measured points on each station-film-filter-aperture-shutter speed combination.

Lockwood, H. E.↗
NASA NTRS1987

Oscillator strengths for S I, S II, and S III

A series of calculations for atomic data of various sulfur and oxygen ions is examined. Recent observations of the Io plasma torus obtained with the Voyager UV Spectrometer, the IUE satellite short wavelength spectrograph, and the rocket-borne faint object telescope are discussed. The calculation of oscillator strengths for S II, the P I sequence, S I, and S III in terms of configuration interaction effects is described. The derivation of orbital wave functions is considered. The use of the close coupling method to estimate collision strengths is studied. The accuracy of these calculations depends on: (1) the number of states used in the close coupling expansion; (2) resonance contributions to the thermally averaged collision strength; and (3) the quality of the target state wave functions. Tables of the derived oscillator strengths are presented.

Ho, Y. K.↗
NASA NTRS1981

Application of maximum-entropy spectral estimation to deconvolution of XPS data

A comparison is made between maximum-entropy spectral estimation and traditional methods of deconvolution used in electron spectroscopy. The maximum-entropy method is found to have higher resolution-enhancement capabilities and, if the broadening function is known, can be used with no adjustable parameters with a high degree of reliability. The method and its use in practice are briefly described, and a criterion is given for choosing the optimal order for the prediction filter based on the prediction-error power sequence. The method is demonstrated on a test case and applied to X-ray photoelectron spectra.

Vasquez, R. P.↗
NASA NTRS1998

Expression of extracellular calcium (Ca2+o)-sensing receptor in human peripheral blood monocytes

The calcium-sensing receptor (CaR) is a G protein-coupled receptor playing key roles in extracellular calcium ion (Ca2+o) homeostasis in parathyroid gland and kidney. Macrophage-like mononuclear cells appear at sites of osteoclastic bone resorption during bone turnover and may play a role in the "reversal" phase of skeletal remodeling that follows osteoclastic resorption and precedes osteoblastic bone formation. Bone resorption produces substantial local increases in Ca2+o that could provide a signal for such mononuclear cells present locally within the bone marrow microenvironment. Indeed, previous studies by other investigators have shown that raising Ca2+o either in vivo or in vitro stimulated the release of interleukin-6 (IL-6) from human peripheral blood monocytes, suggesting that these cells express a Ca2+o-sensing mechanism. In these earlier studies, however, the use of reverse transcription-polymerase chain reaction (RT-PCR) failed to detect transcripts for the CaR previously cloned from parathyroid and kidney in peripheral blood monocytes. Since we recently found that non-specific esterase-positive, putative monocytes isolated from murine bone marrow express the CaR, we reevaluated the expression of this receptor in human peripheral blood monocytes. Immunocytochemistry, flow cytometry, and Western blot analysis, performed using a polyclonal antiserum specific for the CaR, detected CaR protein in human monocytes. In addition, the use of RT-PCR with CaR-specific primers, followed by nucleotide sequencing of the amplified products, identified CaR transcripts in the cells. Therefore, taken together, our data show that human peripheral blood monocytes possess both CaR protein and mRNA very similar if not identical to those expressed in parathyroid and kidney that could mediate the previously described, direct effects of Ca2+o on these cells. Furthermore, since mononuclear cells isolated from bone marrow also express the CaR, the latter might play some role in the "reversal" phase of bone remodeling, sensing local changes in Ca2+o resulting from osteoclastic bone resorption and secreting osteotropic cytokines or performing other Ca2+o-regulated functions that contribute to the control of bone turnover.

NASA Discipline Musculoskeletal↗
NASA NTRS1996

DKRZ workload analysis

The UniTree product as it is released emits a rather large amount of logging information into various log files, but this data typically is meant for operator information in difficult operational situations or directly for debugging purposes. It is strongly advised that the existing logging functionality in the standard release is advanced by adding messages with relevant parameters for every major event in the course of executing file or device oriented requests as described. This upgrade would be relatively easy in terms of implementation effort. The benefit is a complete sequence of transaction descriptions generated by external user requests or by internal administration commands. This collection of transaction records can be used for intensive statistics and performance evaluations. It is furthermore a perfect source to drive realistic system simulations to study the effects of possible hardware or software changes.

Fichter, Hartmut↗
NASA NTRS1999

Mechanosensitive channels in bacteria as membrane tension reporters

The purpose of this short review is to discuss recent data on the molecular structure and mechanism of gating of MscL, a mechanosensitive channel of large conductance from Escherichia coli. MscL is the first isolated molecule shown to convert mechanical stress of the membrane into a simple response, the opening of a large aqueous pore. The functional complex appears to be a stable homo-pentamer of 15-kDa subunits, the gating transitions in which are driven by stretch forces conveyed through the lipid bilayer. We have measured the open probability of MscL and the kinetics of transitions as a function of membrane tension. The parameters extracted from the single-channel current recordings and dose-response curves such as the energy difference between the closed, open, and intermediate conducting states, and the transition-related changes in protein dimensions suggest a large conformational rearrangement of the channel complex. The estimations show that in native conditions MscL openings could be driven primarily by forces of osmotic nature. The thermodynamic and spatial parameters reasonably correlate with the available data on the structure of a single MscL subunit and multimeric organization of the complex. Combined with the functional analysis of mutations, these data give grounds to hypotheses on the nature of the channel mechanosensitivity.

Review↗
NASA NTRS2002

Predicting functional divergence in protein evolution by site-specific rate shifts

Most modern tools that analyze protein evolution allow individual sites to mutate at constant rates over the history of the protein family. However, Walter Fitch observed in the 1970s that, if a protein changes its function, the mutability of individual sites might also change. This observation is captured in the "non-homogeneous gamma model", which extracts functional information from gene families by examining the different rates at which individual sites evolve. This model has recently been coupled with structural and molecular biology to identify sites that are likely to be involved in changing function within the gene family. Applying this to multiple gene families highlights the widespread divergence of functional behavior among proteins to generate paralogs and orthologs.

Review↗
NASA NTRS1975

Design automation techniques for custom LSI arrays

The standard cell design automation technique is described as an approach for generating random logic PMOS, CMOS or CMOS/SOS custom large scale integration arrays with low initial nonrecurring costs and quick turnaround time or design cycle. The system is composed of predesigned circuit functions or cells and computer programs capable of automatic placement and interconnection of the cells in accordance with an input data net list. The program generates a set of instructions to drive an automatic precision artwork generator. A series of support design automation and simulation programs are described, including programs for verifying correctness of the logic on the arrays, performing dc and dynamic analysis of MOS devices, and generating test sequences.

Feller, A.↗
NASA NTRS1993

Star counts from the Hubble Space Telescope Snapshot Survey. I - Galactic models

We report a photometric study of stars from 450 fields at high Galactic latitudes that were observed in the Hubble Space Telescope Snapshot Survey to an average limiting apparent magnitude of V = 21.4. There are 166 fields that contain quasars selected in radio, X-ray, and color-excess surveys. This sample of 273 stars is free of selection bias with respect to the density of stars. To within the Poisson errors, the total counts and magnitude distribution of this unbiased sample are in agreement with the Bahcall-Soneira model (Bahcall, 1986). The angular distribution of the faint stars favors, at the 2 sigma level, a somewhat steeper disk luminosity function and a smaller spheroid main-sequence normalization than given by the model. The sample does not have enough statistical power to distinguish between the two-component Bahcall-Soneira model and the three-component model first proposed by Gilmore and Reid (1983), which contains a thick disk. The statistical power of the survey would increase about 15-fold if colors were obtained for the stars: the data probe the main sequences of the disk, thick disk, and spheroid. Models with and without a thick disk could then be distinguished at the 6 sigma level. The HST Snapshot Survey includes an additional 284 fields, 279 of which are centered on quasars that were selected by objective-prism surveys. These 279 fields are expected to show and do exhibit bias against bright stars, making them unsuitable for testing Galactic models.

Gould, A.↗