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DOE OSTI2023

Assessment of InSAR Seasonal Movements at Bayou Choctaw SPR Site

Ground deformation is important to monitor for the ongoing safety and stability of underground caverns. Implementing InSAR technology to monitor site-wide surface deformation at the Strategic Petroleum Reserve has revealed seasonal ground movements at Bayou Choctaw in Louisiana. The cyclic, seasonal pattern shows soil shrinkage during the spring and summer months and soil expansion during the fall and winter months. Prior to this report, no in-depth investigation was conducted to explain this seasonal phenomenon. However, the ground movement is believed to be near-surface and not geological due to the relatively insignificant movement between years. To better understand seasonality movements, soil properties, land cover, and climatic conditions are assessed to relate near-surface water and soil interactions. The soil, land, and climatic properties all contribute to seasonal ground movement, and vegetation cover and the soil's water capacity contribute to the spatial variability of InSAR seasonal measurements at Bayou Choctaw.

02 PETROLEUM↗

DOE OSTI2022

Litter removal impacts on soil biodiversity and eucalypt plantation development in the seasonal tropics

The little layer of tree plantations provides primary nutrients for uptake, buffers changes in soil moisture, and provides habitat and substrate to soil epigeic fauna. However, this layer in eucalypt plantations is often removed to reduce fuel load during the fire season in the Brazilian savanna (Cerrado). Therefore, it is necessary to quantify the effects of changes in litter dynamics on the function of these plantations, on key nutrient cycling processes and on epigeic fauna diversity and abundance. In two adjacent stands (one juvenile and one mature), the consequences of two years of litter removal were quantified as monthly litterfall, leaf and fine wood litter decomposition, epigeic fauna abundance and diversity, soil biogeochemical variables, and tree diameter and basal area increments. Monthly litterfall rates in juvenile and mature stands did not change with litter removal over the study period. Annual litterfall ranged from 4.1 to 4.9 Mg ha -1 a -1 in litter removal plots and from 3.9 to 4.8 Mg ha -1 a -1 in control plots. Fine wood litter decomposition was slower in litter removal plots compared to controls, while leaf decomposition rates were similar in both. Two years of litter removal in the juvenile stand did not affect topsoil biogeochemical parameters but decreased available phosphorus at 20–40 cm depth relative to controls. In the mature stand, total cation exchange capacity (0–20 cm) was higher in controls (6.4 cmol c dm -3 ) relative to litter removal plots (6.3 cmol c dm -3 ), while soil moisture (0–40 cm depth) was lower in litter removal (25.45 m 3 m -3 ) compared to control plots (26 m 3 m -3 ) in the dry season. A non-metric multidimensional scaling ordination revealed an increased homogeneity in epigeic fauna where litter was removed. Litterfall, decomposition, diameter increment, four soil physical parameters and fourteen chemical parameters at 0–20 and 20–40 cm depth explained the differences in soil epigeic fauna composition between litter removal and control plots. Diameter increment decreased with litter removal only in the juvenile stand, which had reached its growth peak. The results indicate that removing excess litter to decrease fuel volume can alter soil biodiversity and edaphic conditions that negatively affect nutrient cycling and tree growth.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Long-Term Stochasticity Combines With Short-Term Variability in Assembly Processes to Underlie Rice Paddy Sustainability

Revealing temporal patterns of community assembly processes is important for understanding how microorganisms underlie the sustainability of agroecosystem. The ancient terraced rice paddies at Longji provide an ideal platform to study temporal dynamics of agroecosystem sustainability due to their chronosequential records of soil physicochemistry and well-archived microbial information along 630-year rice cultivation. We used statistical null models to evaluate microbial assembly processes along the soil chronosequences of Longji rice paddies through time. Stochastic and deterministic assembly processes jointly governed microbial community composition within successional eras (less than 250 years), and within-era determinism was mainly driven by soil fertility and redox conditions alone or in combination. Conversely, across successional eras (i.e., over 300 years), stochasticity linearly increased with increasing duration between eras and was eventually predominant for the whole 630 years. We suggest that the impact of stochasticity vs. determinism on assembly is timescale-dependent, and we propose that the importance of stochastic assembly of microbial community at longer timescales is due to the gradual changes in soil properties under long-term rice cultivation, which in turn contribute to the sustainability of paddy ecosystem by maintaining a diverse community of microorganisms with multi-functional traits. In total, our results indicate that knowledge on the timescales at which assembly processes govern microbial community composition is key to understanding the ecological mechanisms generating agroecosystem sustainability.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

High-shade dryland agrivoltaic conditions enhanced carbon uptake and water-use efficiency in zucchini ( Cucurbita pepo )

Introduction: The increasing global demand for food and energy is intensifying land-use competition. Agrivoltaic systems are a multifunctional land-use approach that vertically integrates the production of agricultural crops and solar power on the same land area. Most food crops are adapted to full-sun conditions, and the physiological responses of these crops to the novel microclimate under solar panels remain poorly understood. We hypothesized that the microclimate beneath the high-density photovoltaic system would influence carbon uptake, water use, and yield outcomes of zucchini summer squash.Methods: We conducted a field experiment in a hot, semi-arid climate on zucchini (Cucurbita pepo). Plants were grown under an agrivoltaic system with a 75% ground cover ratio (GCR) and in a full-sun control plot, each with two irrigation regimes (100 and 50%). We measured leaf-level photosynthesis, microclimate variables, and fruit yield at plant maturity and throughout the growing season.Results: The agrivoltaic array reduced photosynthetically active radiation (PAR) by ~79%, resulting in a cooler (−1.1 °C), more humid environment with higher soil moisture. These microclimatic conditions enhanced midday photosynthesis and daily cumulative carbon uptake. However, fruit yield was consistently lower under the panels, indicating a shift in carbon allocation toward vegetative growth. Photosynthesis was primarily driven by PAR across treatments, while soil moisture significantly influenced photosynthesis only in the control plots, suggesting water limitation was alleviated under the panels.Discussion: These findings highlight a trade-off between improved physiological performance and reduced yield under high-density agrivoltaics. While the system buffered heat and drought stress and improved overall plant function, excessive shade reduced reproductive output. Optimizing panel density or selecting crops cultivated for non-fruit yields will be essential for balancing food production and energy generation in dryland agrivoltaic settings.

14 SOLAR ENERGY↗

DOE OSTI2022

Seasonal Fluctuations in Iron Cycling in Thawing Permafrost Peatlands

In permafrost peatlands, up to 20% of total organic carbon (OC) is bound to reactive iron (Fe) minerals in the active layer overlying intact permafrost, potentially protecting OC from microbial degradation and transformation into greenhouse gases (GHG) such as CO 2 and CH 4 . During the summer, shifts in runoff and soil moisture influence redox conditions and therefore the balance of Fe oxidation and reduction. Whether reactive iron minerals could act as a stable sink for carbon or whether they are continuously dissolved and reprecipitated during redox shifts remains unknown. We deployed bags of synthetic ferrihydrite (FH)-coated sand in the active layer along a permafrost thaw gradient in Stordalen mire (Abisko, Sweden) over the summer (June to September) to capture changes in redox conditions and quantify the formation and dissolution of reactive Fe(III) (oxyhydr)oxides. We found that the bags accumulated Fe(III) under constant oxic conditions in areas overlying intact permafrost over the full summer season. In contrast, in fully thawed areas, conditions were continuously anoxic, and by late summer, 50.4 ± 12.8% of the original Fe(III) (oxyhydr)oxides were lost via dissolution. Periodic redox shifts (from 0 to +300 mV) were observed over the summer season in the partially thawed areas. This resulted in the dissolution and loss of 47.2 ± 20.3% of initial Fe(III) (oxyhydr)oxides when conditions are wetter and more reduced, and new formation of Fe(III) minerals (33.7 ± 8.6% gain in comparison to initial Fe) in the late summer under more dry and oxic conditions, which also led to the sequestration of Fe-bound organic carbon. Our data suggest that there is seasonal turnover of iron minerals in partially thawed permafrost peatlands, but that a fraction of the Fe pool remains stable even under continuously anoxic conditions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Dynamic soil columns simulate Arctic redox biogeochemistry and carbon release during changes in water saturation

Thawing Arctic permafrost can induce hydrologic change and alter redox conditions, shifting the balance of soil organic matter (SOM) decomposition. There remains uncertainty about how soil saturation and redox transitions impact dissolved and gas phase carbon fluxes, and efforts to link hydrobiogeochemical processes to ecosystem-scale models are limited. This study evaluates SOM decomposition of Arctic tundra soils using column experiments, water chemistry measurements, microbial community analysis, and a PFLOTRAN reactive transport model. Soil columns from a thermokarst channel (TC) and an upland tundra (UC) were exposed to cycles of saturation and drainage, which controlled carbon emissions. During saturation, an outflow of dissolved organic carbon from the UC soil correlated with elevated reduced iron and decreased pH; during drainage, UC carbon dioxide fluxes were 70% higher than TC fluxes. Intermittent methane release was observed for TC, consistent with higher methanogen abundance. Slower drainage in the TC soil correlated with more subtle biogeochemical changes. PFLOTRAN simulations captured experimental trends in soil carbon fluxes, oxygen concentrations, and water contents. The model was then used to evaluate additional soil water drainage rates. This study emphasizes the importance of considering hydrologic change when evaluating and simulating SOM decomposition in dynamic Arctic tundra environments.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Epitaxial growth mechanism of heterogeneous catalytic oxidation of Mn(II) on manganite under oxic conditions

Manganese oxides are ubiquitous in soils and sediments, and their formation and transformation processes affect the migration and transformation of heavy metals and organic pollutants. Most previous work has been focused the oxidation of Mn(II) on Mn(IV) oxide surface, but it remains poorly understood how Mn(II) interacts with manganite under oxic conditions. Here, the interactions between manganite and dissolved Mn(II) within pH 5.0–9.0 under oxic conditions were systematically studied. The results indicated that adsorbed Mn(II) was directly oxidized to manganite on the surface, and the oxidation rate increased with increasing pH and oxygen partial pressure. Electrons are likely transferred in bulk manganite during the oxidation process of Mn(II). Although manganite induced Mn(II) oxidation and the epitaxial growth of bulk particles, there was no obvious change in mineral phase. Dissolved oxygen accelerated the growth of manganite in Mn(II) solution. Compared with the absence of manganite, the presence of manganite inhibited the formation of hausmannite from Mn(II) oxidation by oxygen in air. Furthermore, this study reveals the catalytic oxidation process and mechanism of Mn(II) on manganite surface, and improves the understanding of manganite crystal growth in supergene environments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2022

Genetic variation in nitrogen‐use efficiency and its associated traits in dryland winter wheat ( Triticum aestivum L.) cultivars released from the 1940s to the 2010s in Shaanxi Province, China

Abstract BACKGROUND Improving the nitrogen‐use efficiency (NUE) of wheat can help mitigate the problems of poor soil fertility under dryland conditions. We conducted field experiments using three nitrogen (N) fertilization levels (0, 120, and 180 kg ha −1 ) applied to eight dryland wheat cultivars to assess NUE and its associated traits. RESULTS The grain yield significantly increased with the improvement in variety, mainly as a result of a substantial increase in 1000‐grain weight and harvest index. Modern wheat varieties have stabilized at an optimal plant height and exhibited improved performance in terms of NUE, partial N productivity, N harvest index, and grain protein content compared to older varieties. The NUE of wheat gradually increased with variety replacement. The net photosynthesis rate of the flag leaves in the filling stage improved with the year of cultivar release; Increasing soil–plant analysis development (SPAD) values of flag leaves in the flowering and filling stages were observed over time, with the flag leaves of modern varieties showing a high chlorophyll content in the filling stage. Additionally, the principal component analysis showed that the SPAD value, grain number per unit area, transpiration rate, leaf area, and grain protein content positively contributed to the clustering of the N180 and modern cultivars (from the 2000s to 2010s). CONCLUSION Overall, high levels of N application did not significantly improve the NUE of wheat. However, modern wheat varieties can optimize N distribution, increase flag leaf photosynthetic capacity, and improve photosynthesis ability, thus enhancing NUE to achieve high yields under a suitable level of N supply. © 2022 Society of Chemical Industry.

Lian, Huida↗

DOE OSTI2022

Soil Sample Report in Support of the Site 300 Hazardous Waste Facility Permit, Part V, Special Condition #16 a-f

The California Department of Toxic Substances Control (DTSC) issued a Resource Conservation and Recovery Act (RCRA) Hazardous Waste Facility Permit (HWFP) to Lawrence Livermore National Laboratory (LLNL) Experimental Test Site 300 (Site 300) in August 2017. This soil sampling summary report is required as part of the HWFP, Part V, Special Condition #16 a-f. Soil sample results for Constituents of Concern (COC) were evaluated relative to established site-wide background levels that were developed by the LLNL Environmental Restoration Department (ERD) for site mitigation work pursuant to the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Influence of Agricultural Managed Aquifer Recharge (AgMAR) and Stratigraphic Heterogeneities on Nitrate Reduction in the Deep Subsurface

Agricultural managed aquifer recharge (AgMAR) is a strategy whereby surface water is used to intentionally flood croplands to recharge underlying aquifers. However, nitrate (NO 3 - ) contamination in agriculturally intensive regions poses a threat to groundwater resources under AgMAR. We use a reactive transport model to understand the effects of AgMAR management strategies (i.e., by varying the frequency, duration between flooding events, and amount of water) on NO 3 - leaching to groundwater under different stratigraphic configurations and antecedent moisture conditions. We examine the potential of denitrification and nitrogen retention in deep vadose zone sediments (~15 m) using variable AgMAR application rates on two-dimensional representations of differently textured soils, soils with discontinuous bands/channels, and with preferential flow paths characteristic of agricultural fields. Simulations indicate finer textured sediments, alone or embedded within/adjacent to high flow regions, are important reducing zones providing conditions needed for denitrification. Simulation results suggest that applying water all-at-once rather than in increments transports higher concentrations of NO 3 - deeper into the profile, which may exacerbate groundwater quality. This transport into deeper depths can be aggravated by wetter antecedent soil moisture conditions. However, applying water all-at-once also increases denitrification within the vadose zone by promoting anoxic conditions. We conclude that AgMAR can be designed to enhance denitrification in the subsurface and reduce NO 3 - leaching to groundwater, while specifically accounting for lithologic heterogeneity, antecedent soil moisture conditions, and depth to the water table. Our findings are potentially relevant to other systems that experience flooding inundation such as floodplains and dedicated recharge basins.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Enhanced Transport of TiO 2 in Unsaturated Sand and Soil after Release from Biodegradable Plastic during Composting

Biodegradable plastics can reach full degradation when disposed of appropriately and thus alleviate plastic pollution caused by conventional plastics. But additives can be released into the environment during degradation, and the fate of these additives can be affected by the degradation process. In this study, we characterized TiO 2 particles released from a biodegradable plastic mulch during composting and studied the transport of the released TiO 2 particles in inert sand and agricultural soil columns under unsaturated flow conditions. TiO 2 microparticles were released from the biodegradable plastic mulch in both single particle and cluster forms. The released TiO 2 microparticles were fully retained in unsaturated soil columns due to its ne texture, slow flow rate, and favorable attachment conditions. But in unsaturated sand columns, the released TiO 2 microparticles were highly mobile. Additionally, comparison with the pristine TiO 2 microparticles revealed that the enhanced mobility of the released TiO 2 microparticles was caused by the presence of compost residues which blocked attachment sites on the sand surface. This study demonstrates that TiO 2 microparticles can be released during composting of biodegradable plastics, and the transport potential of the released TiO 2 microparticles in the terrestrial environment can be enhanced by the presence of compost material.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Deep Vadose Zone Monitoring Test Bed (FY23 Status Report)

A subsurface air injection at the Hanford Site’s Deep Vadose Zone Monitoring Test Bed was completed to realize a change in subsurface hydrologic conditions in accordance with a soil desiccation remedy. The injection mimicked a previous injection at the site that was performed in accordance with a vadose zone treatability study. Unlike the previous test which relied on electrical methods only, the change in hydrologic conditions during the recent test was also monitored using cross-hole seismic sensing methods to assess the ability of the seismic methods to evaluate changes in moisture conditions of desiccated sediment at the field scale. Data from in situ neutron probes indicates a reduction of soil moisture in the vicinity of the injection well due to the air injection. Similar changes were observed in the time-lapse electrical resistivity and seismic data, which indicates a loss of soil moisture over time. Tomographic inversions of the time-lapse geophysical data illustrate the 2D and 3D features of the soil moisture distribution over time. Time-lapse electrical resistivity tomography (ERT) results show a reduction in the electrical conductivity of the subsurface in the vicinity of the injection well, with most changes occurring within the screened interval. Similar patterns are observed in the seismic tomography results, with both methods illustrating two lobe-shaped features of reduced soil moisture. Use of seismic and ERT technologies in tandem takes advantage of two complementary geophysical monitoring technologies, providing increased sensitivity to specific hydrologic conditions. The multiphysics approach, therefore, has the potential to improve the ability to estimate subsurface moisture conditions from sensor-based and remotely sensed geophysical data that will ultimately improve the ability of remediation contractors to evaluate remedy performance.

58 GEOSCIENCES↗

DOE OSTI2023

The direct and indirect drivers shaping RNA viral communities in grassland soil

Recent studies have revealed diverse RNA viral communities in soils. Yet, how environmental factors influence soil RNA viruses remains largely unknown. Here, we recovered RNA viral communities from 24 metatranscriptomes sequenced from grassland soils managed under a range of environmental conditions including 1) water content: 100% and 25% water holding capacity, 2) plant presence: planted with tall wheatgrass (Thinopyrum ponticum) and bare soil, 3) cultivar type: Alkar and Jose, and 4) soil depth: 0-5 cm and 15-25 cm. The recovered RNA viral communities were novel with nearly one-third of the RNA viral contigs uniquely detected in the studied grassland. The classified RNA viral contigs are mostly known as eukaryotic RNA viruses (74.7%) belonging to Phyla Duplornaviricota, Kitrinoviricota, Lenarviricota, and Pisuviricota. Eukaryotic RNA viruses of Family Mitoviridae as well as their natural hosts, Fungi, are one of the most dominant taxa. Consistent with the results of nonmetric multidimensional scaling analysis, the four environmental conditions (water content, plant presence, cultivar, and soil depth) significantly influence the assemblages of soil RNA viral communities as suggested by the correlation analysis and the random forest algorithm. The modularity analysis of the factor network and the structural equation modeling further support the hierarchical associations among the four environmental factors and the community factors representing the co-existing eukaryotic, prokaryotic, and RNA viral communities. The soil water content, plant presence, and type of cultivar demonstrate a significant positive impact on eukaryotic RNA viral richness directly as well as indirectly on eukaryotic RNA viral abundance via influencing the co-existing eukaryotic members in this soil. Our data also provide statistical support for the negative influence of soil depth on soil eukaryotic richness and abundances resulting in its indirect impact on soil eukaryotic RNA viral communities. This study provides field-relevant information on how environmental and community factors collectively shape soil RNA communities and contribute to ecological understanding of RNA viral survival under various environmental conditions and virus-host interactions in soil.

Wu, Ruonan↗

DOE OSTI2024

Sea-level rise and arsenic-rich soils: A toxic relationship

In the United States, dangerously high arsenic (As) levels have been found in drinking water wells in more than 25 states, potentially exposing 2.1 million people to drinking water high in As; a known carcinogen. The anticipated sea-level rise (SLR) is expected to alter soil biogeochemical and hydrological conditions, potentially impacting their ability to sequester As. In our study of coastal Wilmington, DE, an area projected to experience a 1-meter SLR by 2100, we examined the spatial distribution, speciation, and release possibilities of As due to SLR. To understand the complex dynamics at play, we employed a comprehensive approach, including bulk and micro X-ray absorption spectroscopy measurements, hydrological pattern evaluation, and macroscopic stirred-flow experiments. Further, our results suggest that introducing reducing and saline conditions can increase As release in both river water and seawater inundation scenarios, most likely due to ionic competition and the dissolution of As-bearing Fe/Mn oxides. Regardless of the salinity source, the released As concentrations consistently exceeded the EPA threshold for drinking water. Our results provide valuable insights for developing appropriate remedial and management strategies for this site and numerous others facing similar environmental challenges.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Imprint of Anthropogenic Sources and Soil Removal on the Surface Concentration of H2 in the Contiguous US

Hydrogen (H2) is experiencing renewed interest throughout the world as a low carbon fuel alternative or complement to fossil fuels. Significant uncertainties remain regarding the environmental impact of increasing H2 usage, in part due to gaps in our understanding of the H2 atmospheric budget, including the H2 release from industrial activities and the H2 soil removal, the most important sink of H2. This study focuses on H2 dry air mole fractions measured by the NOAA Global Monitoring Laboratory in discrete ambient air samples collected every few days at sites located in the contiguous United States between 2010 and 2022. We take advantage of the long-term observations from this network to study the regional distribution of H2 sources using the potential source contribution function (PSCF). We find that H2 PSCF is consistent with a large anthropogenic source of atmospheric H2 from the incomplete combustion of fossil fuel. However, episodic air masses with high H2 dry air mole fractions (>700 ppb) recorded at some sampling locations in the Western and Southeastern US are not associated with elevated CO, suggesting significant noncombustion anthropogenic or geological sources of H2. Air masses depleted in H2 are recorded in rural or remote continental sites. Our analysis of observations from a tall tower in NE Colorado suggests that the degree of H2 depletion not only reflects differences in soil exposure but also the regional inhibition of the soil sink under arid conditions.

Paulot, Fabien↗

DOE OSTI2024

Integrating Tide‐Driven Wetland Soil Redox and Biogeochemical Interactions Into a Land Surface Model

Abstract Redox processes, aqueous and solid‐phase chemistry, and pH dynamics are key drivers of subsurface biogeochemical cycling and methanogenesis in terrestrial and wetland ecosystems but are typically not included in terrestrial carbon cycle models. These omissions may introduce errors when simulating systems where redox interactions and pH fluctuations are important, such as wetlands where saturation of soils can produce anoxic conditions and coastal systems where sulfate inputs from seawater can influence biogeochemistry. Integrating cycling of redox‐sensitive elements could therefore allow models to better represent key elements of carbon cycling and greenhouse gas production. We describe a model framework that couples the Energy Exascale Earth System Model (E3SM) Land Model (ELM) with PFLOTRAN biogeochemistry, allowing geochemical processes and redox interactions to be integrated with land surface model simulations. We implemented a reaction network including aerobic decomposition, fermentation, sulfate reduction, sulfide oxidation, methanogenesis, and methanotrophy as well as pH dynamics along with iron oxide and iron sulfide mineral precipitation and dissolution. We simulated biogeochemical cycling in tidal wetlands subject to either saltwater or freshwater inputs driven by tidal hydrological dynamics. In simulations with saltwater tidal inputs, sulfate reduction led to accumulation of sulfide, higher dissolved inorganic carbon concentrations, lower dissolved organic carbon concentrations, and lower methane emissions than simulations with freshwater tidal inputs. Model simulations compared well with measured porewater concentrations and surface gas emissions from coastal wetlands in the Northeastern United States. These results demonstrate how simulating geochemical reaction networks can improve land surface model simulations of subsurface biogeochemistry and carbon cycling.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Plant ecological genomics at the limits of life in the Atacama Desert

The Atacama Desert in Chile—hyperarid and with high–ultraviolet irradiance levels—is one of the harshest environments on Earth. Yet, dozens of species grow there, including Atacama-endemic plants. Herein, we establish the Talabre–Lejía transect (TLT) in the Atacama as an unparalleled natural laboratory to study plant adaptation to extreme environmental conditions. We characterized climate, soil, plant, and soil–microbe diversity at 22 sites (every 100 m of altitude) along the TLT over a 10-y period. We quantified drought, nutrient deficiencies, large diurnal temperature oscillations, and pH gradients that define three distinct vegetational belts along the altitudinal cline. Further, we deep-sequenced transcriptomes of 32 dominant plant species spanning the major plant clades, and assessed soil microbes by metabarcoding sequencing. The top-expressed genes in the 32 Atacama species are enriched in stress responses, metabolism, and energy production. Moreover, their root-associated soils are enriched in growth-promoting bacteria, including nitrogen fixers. To identify genes associated with plant adaptation to harsh environments, we compared 32 Atacama species with the 32 closest sequenced species, comprising 70 taxa and 1,686,950 proteins. To perform phylogenomic reconstruction, we concatenated 15,972 ortholog groups into a supermatrix of 8,599,764 amino acids. Using two codon-based methods, we identified 265 candidate positively selected genes (PSGs) in the Atacama plants, 64% of which are located in Pfam domains, supporting their functional relevance. For 59/184 PSGs with an Arabidopsis ortholog, we uncovered functional evidence linking them to plant resilience. As some Atacama plants are closely related to staple crops, these candidate PSGs are a “genetic goldmine” to engineer crop resilience to face climate change.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Time for a drought experiment: Do you know your plants’ water status?

Abstract Drought stress is an increasing concern because of climate change and increasing demands on water for agriculture. There are still many unknowns about how plants sense and respond to water limitation, including which genes and cellular mechanisms are impactful for ecology and crop improvement in drought-prone environments. A better understanding of plant drought resistance will require integration of several research disciplines. A common set of parameters to describe plant water status and quantify drought severity can enhance data interpretation and research integration across the research disciplines involved in understanding drought resistance and would be especially useful in integrating the flood of genomic data being generated in drought studies. Water potential (ψw) is a physical measure of the free energy status of water that, along with related physiological measurements, allows unambiguous description of plant water status that can apply across various soil types and environmental conditions. ψw and related physiological parameters can be measured with relatively modest investment in equipment and effort. Thus, we propose that increased use of ψw as a fundamental descriptor of plant water status can enhance the insight gained from many drought-related experiments and facilitate data integration and sharing across laboratories and research disciplines.

Juenger, Thomas E. (ORCID:0000000195509288)↗