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Agent-based modeling of microbes in space

Space is tough on organisms. Microorganisms traveling to space experience stress from environmental features such as ionizing radiation and lack of normal microgravity; however, much remains unknown about the mechanisms by which those environmental features affect microbial physiology. Microbes experience changes in gravity not directly but rather through changes in their fluid environment, and deep-space particle radiation causes cell damage that is complex but rare. Computational modeling at the single-cell level (agent-based modeling) can allow us to probe the spatially heterogeneous processes that characterize space stresses, to gain insight into the relationships of microbial cells with their environments and with each other. Here we present two software packages for simulating microbial population dynamics in space conditions: CAMDLES and AMMPER. Microbes growing in liquid culture medium in the microgravity of an orbital space station experience a quiescent, poorly-mixed fluid environment. CAMDLES (CFD-DEM Artificial Microgravity Developments for Living Ecosystem Simulation) simultaneously simulates biological, chemical, and mechanical processes to predict microbial ecological dynamics in microgravity, and in the rotating culture vessels used to create an artificial microgravity environment in the lab. Initial results demonstrate that the growth of a cross-feeding microbial consortium, dependent on the exchange of soluble metabolites, is sensitive to the initial spatial distribution of cells, and grows differently in real versus artificial microgravity. Microbial populations exposed to deep-space radiation experience spatially and temporally heterogeneous damage from the traversal of high-energy particles. AMMPER (Agent-Based Model for Microbial Populations Exposed to Radiation) pairs a 3d model of energy deposition along a radiation particle track with a microbial population growth and damage model to predict the effects of localized radiation damage on population-level responses. It includes a user-friendly graphical interface. AMMPER results agree with experimental data indicating that indirect effects of radiation (reactive oxygen species generation, metabolic impairment) have a greater impact on microorganisms than direct effects (DNA damage).

Jessica A Lee↗

NASA NTRS2022

Agent-Based Modeling of Microbes in Space

Space is tough on organisms. Microorganisms traveling to space experience stress from environmental features such as ionizing radiation and lack of normal gravity, and much remains unknown about the mechanisms by which those environmental features affect microbial physiology. Microbes experience changes in gravity not directly but rather through changes in their fluid environment, and deep-space particle radiation causes cell damage that is complex but rare. Computational modeling at the single-cell level (agent-based modeling) can allow us to probe the spatially heterogeneous processes that characterize space stresses, to gain insight into the relationships of microbial cells with their environments and with each other. Here we present two software packages for simulating microbial population dynamics in space conditions: CAMDLES and AMMPER. Microbes growing in liquid culture medium in the microgravity of an orbital space station experience a quiescent, poorly-mixed fluid environment. CAMDLES (CFD-DEM Artificial Microgravity Developments for Living Ecosystem Simulation) simultaneously simulates biological, chemical, and mechanical processes to predict microbial ecological dynamics in microgravity, and in the rotating culture vessels used to create an artificial microgravity environment in the lab. Initial results demonstrate that the growth of a cross-feeding microbial consortium, dependent on the exchange of soluble metabolites, is sensitive to the initial spatial distribution of cells, and grows differently in real versus artificial microgravity. Microbial populations exposed to deep-space radiation experience spatially and temporally heterogeneous damage from the traversal of high-energy particles. AMMPER (Agent-Based Model for Microbial Populations Exposed to Radiation) pairs a 3d model of energy deposition along a radiation particle track with a microbial population growth and damage model to predict the effects of localized radiation damage on population-level responses. It includes a user-friendly graphical interface. AMMPER growth curves recapitulate experimental results, and allow comparison between direct effects (DNA damage) and indirect effects (reactive oxygen species generation, metabolic impairment) of radiation.

microbiology↗

NASA NTRS2012

Spatial Variability in Column CO2 Inferred from High Resolution GEOS-5 Global Model Simulations: Implications for Remote Sensing and Inversions

Column CO2 observations from current and future remote sensing missions represent a major advancement in our understanding of the carbon cycle and are expected to help constrain source and sink distributions. However, data assimilation and inversion methods are challenged by the difference in scale of models and observations. OCO-2 footprints represent an area of several square kilometers while NASA s future ASCENDS lidar mission is likely to have an even smaller footprint. In contrast, the resolution of models used in global inversions are typically hundreds of kilometers wide and often cover areas that include combinations of land, ocean and coastal areas and areas of significant topographic, land cover, and population density variations. To improve understanding of scales of atmospheric CO2 variability and representativeness of satellite observations, we will present results from a global, 10-km simulation of meteorology and atmospheric CO2 distributions performed using NASA s GEOS-5 general circulation model. This resolution, typical of mesoscale atmospheric models, represents an order of magnitude increase in resolution over typical global simulations of atmospheric composition allowing new insight into small scale CO2 variations across a wide range of surface flux and meteorological conditions. The simulation includes high resolution flux datasets provided by NASA s Carbon Monitoring System Flux Pilot Project at half degree resolution that have been down-scaled to 10-km using remote sensing datasets. Probability distribution functions are calculated over larger areas more typical of global models (100-400 km) to characterize subgrid-scale variability in these models. Particular emphasis is placed on coastal regions and regions containing megacities and fires to evaluate the ability of coarse resolution models to represent these small scale features. Additionally, model output are sampled using averaging kernels characteristic of OCO-2 and ASCENDS measurement concepts to create realistic pseudo-datasets. Pseudo-data are averaged over coarse model grid cell areas to better understand the ability of measurements to characterize CO2 distributions and spatial gradients on both short (daily to weekly) and long (monthly to seasonal) time scales

Ott, L.↗

NASA NTRS1977

Separated-flow unsteady pressures and forces on elastically responding structures

Broadband rms, spectral density, and spatial correlation information that characterizes the fluctuating pressures and forces that cause aircraft buffet is presented. The main theme of the paper in describing buffet excitation is to show the effects of elasticity. Data are presented that were obtained in regions of separated flow on wings of wind-tunnel models of varying stiffness and on the wing of a full scale aircraft. Reynolds number effects on the pressure fluctuations are also discussed.

Coe, C. F.↗

NASA NTRS1977

Separated-flow unsteady pressures and forces on elastically responding structures

Broadband rms, spectral density, and spatial correlation information that characterizes the fluctuating pressures and forces that cause aircraft buffet is presented. The main theme is to show the effects of elasticity. In order to do so, data are presented that were obtained in regions of separated flow on wings of wind-tunnel models of varying stiffness and on the wing of a full-scale aircraft. Reynolds number effects on the pressure fluctuations are also discussed.

Coke, C. F.↗

NASA NTRS1980

Assessment of the use of space technology in the monitoring of oil spills and ocean pollution: Technical volume. Executive summary

The potential of space systems and technology for detecting and monitoring ocean oil spills and waste pollution was assessed as well as the impact of this application on communication and data handling systems. Agencies charged with responsibilities in this area were identified and their measurement requirements were ascertained in order to determine the spatial resolution needed to characterize operational and accidental discharges. Microwave and optical sensors and sensing techniques were evaluated as candidate system elements. Capabilities are described for the following: synthetic aperture radar, microwave scatterometer, passive microwave radiometer, microwave altimeter, electro-optical sensors currently used in airborne detection, existing space-based optical sensors, the thematic mapper, and the pointable optical linear array.

Alvarado, U. R.↗

NASA NTRS1984

Calderas of the Sierra Madre Occidental volcanic field western Mexico

The data base on the mineral content, geomorphology, and extent of caldera in the Sierra Madre Occidental volcanic field is surveyed. Caldera identified from Landsat imagery and confirmed by field studies have generally had high structural levels and are therefore the youngest calderas and sometimes overlap. Detectable margins have been vertical and abrupt, while other structures indicate collapse during eruption and accumulation of thick, intracaldera facies. Calderas which collapsed are generally filled with sedimentation. Mineral deposits hosted by the caldera include tin, silver, gold, and iron, and a spatial relationship has been characterized between the Ocampa caldera structure and mineralized precaldera rocks. The survey has confirmed the locations of several dozen caldera, while the volume of silicic rocks surveyed indicates the presence of several hundred caldera in the Sierra Madre.

Swanson, E. R.↗

NASA NTRS1986

Optical system design, analysis, and production for advanced technology systems; Proceedings of the Meeting, Innsbruck, Austria, Apr. 15-17, 1986

The present conference considers topics in the fields of optical systems design software, the design and analysis of optical systems, illustrative cases of advanced optical system design, the integration of optical designs into greater systems, and optical fabrication and testing techniques. Attention is given to an extended range diffraction-based merit function for lens design optimization, an assessment of technologies for stray light control and evaluation, the automated characterization of IR systems' spatial resolution, a spectrum of design techniques based on aberration theory, a three-field IR telescope, a large aperture zoom lens for 16-mm motion picture cameras, and the use of concave holographic gratings as monochomators. Also discussed are the use of aspherics in optical systems, glass choice procedures for periscope design, the fabrication and testing of unconventional optics, low mass mirrors for large optics, and the diamond grinding of optical surfaces on aspheric lens molds.

Fischer, Robert E.↗

NASA NTRS1988

Carbon monoxide over the Amazon Basin during the 1985 dry season

During the Amazon Boundary Layer Experiment, approximately 100 hours of in situ carbon monoxide measurements were obtained using a tunable diode laser sensor that provided continuous, fast-response (about 1 s) measurements. This data set, taken on board the NASA Electra between July 12 and August 12, 1985, characterizes the temporal and spatial changes in the CO distribution over the Amazon Basin as meteorological conditions progressed from the early to middle phases of the 1985 day season. Early dry-season CO values of 75-95 ppbv were generally observed in the PBL. As the dry season became well established, biomass burning and a persistent capping inversion at about 3 km profoundly altered the CO distribution, with PBL values typically reaching 150-275 ppbv. Concentrations as high as 800 ppbv were measured within identifiable haze layers. An analysis of satellite imagery shows that biomass burning was occurring along the Amazon River system and in savannah areas located more than 1000 km south of the region sampled.

Sachse, G. W.↗

NASA NTRS1994

A model-based approach for detection of runways and other objects in image sequences acquired using an on-board camera

This research was initiated as a part of the Advanced Sensor and Imaging System Technology (ASSIST) program at NASA Langley Research Center. The primary goal of this research is the development of image analysis algorithms for the detection of runways and other objects using an on-board camera. Initial effort was concentrated on images acquired using a passive millimeter wave (PMMW) sensor. The images obtained using PMMW sensors under poor visibility conditions due to atmospheric fog are characterized by very low spatial resolution but good image contrast compared to those images obtained using sensors operating in the visible spectrum. Algorithms developed for analyzing these images using a model of the runway and other objects are described in Part 1 of this report. Experimental verification of these algorithms was limited to a sequence of images simulated from a single frame of PMMW image. Subsequent development and evaluation of algorithms was done using video image sequences. These images have better spatial and temporal resolution compared to PMMW images. Algorithms for reliable recognition of runways and accurate estimation of spatial position of stationary objects on the ground have been developed and evaluated using several image sequences. These algorithms are described in Part 2 of this report. A list of all publications resulting from this work is also included.

Kasturi, Rangachar↗

NASA NTRS1998

Satellite-Based Investigations of the Transition from an Oceanic to Continental Transform Margin

Detailed characterization of neotectonics evolution of the Valle de San Felipe and Arroyo Grande regions in northern Baja California. Reoccupied GEOMEX GPS sites, and occupied a regional GPS (Global Positioning System) network. The Baja California peninsula in Mexico offers a unique setting for studying the kinematic evolution of a complex, active strike-slip/rift plate boundary. We are currently conducting remote sensing, geologic, and geodetic studies of this boundary. The combined data sets will yield instantaneous and time integrated views of its evolution. This proposal solicits renewed funding from NASA to support remote sensing and geologic studies. During the late Cenozoic, Baja California has been the locus of changing fault geometry that has accommodated components of the relative motion between the North America and Pacific plates. Contemporary slip between the two plates occurs in a broad zone that encompasses much of southern California and the Baja California Peninsula. The transfer of slip across this zone in southern California is relatively well understood. South of the border, the geometry and role of specific faults and structural provinces in transferring plate margin deformation across the peninsula is enigmatic. Results We use Landsat Thematic Mapper imagery of the Baja California Peninsula to identify recent and active faults, and then conduct field studies that characterize the temporal and spatial structural evolution of the plate margin. These data address questions concerning the neotectonic development of the Gulf of California, the Baja California Peninsula, and their role in evolution of the post-Miocene Pacific - North American plate boundary. Moreover, these studies provide constraints on the geometry of active faults, allowing more exact understanding of the results of ongoing NASA-supported geodetic experiments. In addition, anticipated publication of the TM scenes will provide a widely available geological data base for relatively little-known peninsula California. Achievements include development of an ArcInfo data base of Landsat and SPOT imagery, detailed field studies of Neogene structures in northeastern Baja California, and new constraint on Pacific - North America plate motion at Baja California latitudes. These results are reported in maps, manuscripts and data products which are published or near completion.

Miller, M. Meghan↗

NASA NTRS1999

Unsteady Diffusion Flames: Ignition, Travel, and Burnout (SUBCORE Project: Simplified Unsteady Burning of Contained Reactants)

An experimental apparatus for the examination of a planar, virtually strain-rate-free diffusion flame in microgravity has been designed and fabricated. Such a diffusion flame is characterized by relatively large spatial scale and high symmetry (to facilitate probing), and by relatively long fluid-residence time (to facilitate investigation of rates associated with sooting phenomena). Within the squat rectangular apparatus, with impervious, noncatalytic isothermal walls of stainless steel, a thin metallic splitter plate subdivides the contents into half-volumes. One half-volume initially contains fuel vapor diluted with an inert gas, and the other, oxidizer diluted with another inert gas-so that the two domains have equal pressure, density, and temperature. As the separator is removed, by translation in its own plane, through a tightly fitting slit in one side wall, a line ignitor in the opposite side wall initiates a triple-flame propagation across the narrow layer of combustible mixture formed near midheight in the chamber. The planar diffusion flame so emplaced is quickly disrupted in earth gravity. In microgravity, the planar flame persists, and travels ultimately into the half-volume containing the stoichiometrically deficient reactant; the flame eventually becomes extinguished owing to reactant depletion and heat loss to the walls.

Fendell, Francis↗

NASA NTRS1998

Seasonally Frozen Soil Monitoring Using Passive Microwave Satellite Data and Simulation Modeling

Satellite data and simulation modeling were used to assess seasonally frozen soils in the central US - Canada borders area (46-53 degrees N and 96-108 degrees). We used Scanning Multichannel Microwave Radiometer (SMMR) satellite data to delineate the top layer of frozen soils. SMMR is a passive microwave sensor having five channels (6.6, 10, 18, 21 and 37 GHz) with a horizontal and vertical polarization. SMRR data are available between 1978-1987 with noon and midnight overpass and footprint sizes between 25 km and 150 km. SMMR data were processed from resampled 1/4 degree grid cells during fall freeze-up and spring thaw (fall 1985 - spring 1987). The dielectric properties of a target may directly affect the satellite signal. The dielectric value is an order of magnitude smaller for frozen soil water. There are other significant changes to the emitted microwave signal from changes to the surface physical temperature, attenuation of the soil signal from plant water and soil moisture. We further characterized the temporal and spatial dynamic of frozen soils using the FroST (Frozen Soil Temperature) simulation model. The FroST model was used to further predict soil water and ice content, and soil temperature. SMMR results were compared versus 5-cm soil temperature data from available weather stations (14 in Canada and 11 for available months in the US). SMMR data were analyzed as a function of frequency, polarization, polarization difference, and "frequency gradient". In addition, vegetation density, physical temperature and snow depth were also considered. Preliminary analysis of SMMR derived frozen soil/thaw classification using a simple threshold classification indicates a mean overall classification accuracy by season of 85 percent. A sensitivity analysis for different soils with varying amounts of snow was conducted with FroST, which showed that the amount of snow, and the time of snow fall and melt affected the ice and water content, and depth of thaw. These results indicate a potential source of flooding and erosion under conditions when melting snow and spring rains provide a source of infiltrating water.

Toll, D. L.↗

NASA NTRS1999

Rock Statistics at the Mars Pathfinder Landing Site, Roughness and Roving on Mars

Several rock counts have been carried out at the Mars Pathfinder landing site producing consistent statistics of rock coverage and size-frequency distributions. These rock statistics provide a primary element of "ground truth" for anchoring remote sensing information used to pick the Pathfinder, and future, landing sites. The observed rock population statistics should also be consistent with the emplacement and alteration processes postulated to govern the landing site landscape. The rock population databases can however be used in ways that go beyond the calculation of cumulative number and cumulative area distributions versus rock diameter and height. Since the spatial parameters measured to characterize each rock are determined with stereo image pairs, the rock database serves as a subset of the full landing site digital terrain model (DTM). Insofar as a rock count can be carried out in a speedier, albeit coarser, manner than the full DTM analysis, rock counting offers several operational and scientific products in the near term. Quantitative rock mapping adds further information to the geomorphic study of the landing site, and can also be used for rover traverse planning. Statistical analysis of the surface roughness using the rock count proxy DTM is sufficiently accurate when compared to the full DTM to compare with radar remote sensing roughness measures, and with rover traverse profiles.

Haldemann, A. F. C.↗

NASA NTRS2003

Investigation of the Short-Time Variability of Tropical Tropospheric Ozone

Since 1998, a ground based tropospheric ozone lidar has been running at Reunion Island and has been involved with a daily measurement campaign that was performed in the latter part of the biomass burning season, during November-December 1999. The averaged ozone profile obtained during November-December 1 999 agrees well with averaged ozone profile obtained from ozonesondes launch at Reunion during November-December (1992- 2001). Comparing weekly sonde launches (part of the Southern Hemisphere Additional Ozonesondes: SHADOZ program) with the daily ground-based lidar observations shows that some striking features of the day to day variability profiles are not observed in the sonde measurements. Ozone profiles respond to the nature of disturbances which vary from the one day to the next. The vertical ozone distribution at Reunion is examined as a function of prevailing atmospheric circulation. Backtrajectories show that most of the enhanced ozone crossed over biomass burning and convectively active regions in Madagascar and the southern African continent. The analyses of the meteorological data show that ozone stratification profiles are in agreement with the movement of the synoptical situations in November-December 1999. Three different sequences of transport are explained using wind fields. The first sequence from 23 to 25 November is characterized by Northerly transport, the second sequence from 26 to 30 November, the air masses are influenced by meridional transport. The third sequence from 2 to 6 December is characterized by westerly transport associated with the subtropical jet stream. The large standard deviations of lidar profiles in the middle and upper troposphere are in agreement with the upper wind variabilities which evidence passing ridge and trough disturbances. During the transition period between the dry season and the wet season, multiple ozone sources including stratosphere-troposphere exchanges, convection and biomass burning contribute to tropospheric ozone at Reunion Island through sporadic events characterized by a large spatial and temporal variability.

Randriambelo, Tantely↗

NASA NTRS2000

Remote sensing and human health: new sensors and new opportunities

Since the launch of Landsat-1 28 years ago, remotely sensed data have been used to map features on the earth's surface. An increasing number of health studies have used remotely sensed data for monitoring, surveillance, or risk mapping, particularly of vector-borne diseases. Nearly all studies used data from Landsat, the French Systeme Pour l'Observation de la Terre, and the National Oceanic and Atmospheric Administration's Advanced Very High Resolution Radiometer. New sensor systems are in orbit, or soon to be launched, whose data may prove useful for characterizing and monitoring the spatial and temporal patterns of infectious diseases. Increased computing power and spatial modeling capabilities of geographic information systems could extend the use of remote sensing beyond the research community into operational disease surveillance and control. This article illustrates how remotely sensed data have been used in health applications and assesses earth-observing satellites that could detect and map environmental variables related to the distribution of vector-borne and other diseases.

Satellite Communications↗

NASA NTRS2008

Simultaneous Noncontact Precision Imaging of Microstructural and Thickness Variation in Dielectric Materials Using Terahertz Energy

This article describes a noncontact single-sided terahertz electromagnetic measurement and imaging method that simultaneously characterizes microstructural (egs. spatially-lateral density) and thickness variation in dielectric (insulating) materials. The method was demonstrated for two materials-Space Shuttle External Tank sprayed-on foam insulation and a silicon nitride ceramic. It is believed that this method can be used as an inspection method for current and future NASA thermal protection system and other dielectric material inspection applications, where microstructural and thickness variation require precision mapping. Scale-up to more complex shapes such as cylindrical structures and structures with beveled regions would appear to be feasible.

Roth, Don J.↗

NASA NTRS2009

Compact Reconnaissance Imaging Spectrometer Observations of Water Vapor and Carbon Monoxide

The Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) onboard the Mars Reconnaissance Orbiter (MRO) spacecraft began taking observations in September 2006 and has now collected more than a full Martian year of data. Retrievals performed using the near-infrared spectra obtained by CRISM are used to characterize the seasonal and spatial variation of the column abundance of water vapor and the column-averaged mixing ratio of carbon monoxide. CRISM retrievals show nominal behavior in water vapor during northern hemisphere spring and summer with maximum abundance reaching 50 precipitable micrometers. Water vapor abundance during the southern hemisphere spring and summer appears significantly reduced compared to observations by other instruments taken during previous years. The CRISM retrievals show the seasonally and globally averaged carbon monoxide mixing ratio to be 700 ppm, but with strong seasonal variations at high latitudes. The summertime near-polar carbon monoxide mixing ratio falls to 200 ppm in the south and 400 ppm in the north as carbon dioxide sublimates from the seasonal polar ice caps and dilutes noncondensable species including carbon monoxide. At low latitudes, the carbon monoxide mixing ratio varies in response to the mean seasonal cycle of surface pressure.

Smith, Michael D.↗