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At least 235 records · Page 13

Model fusion with physics-guided machine learning: Projection-based reduced-order modeling

The unprecedented amount of data generated from experiments, field observations, and large-scale numerical simulations at a wide range of spatiotemporal scales has enabled the rapid advancement of data-driven and especially deep learning models in the field of fluid mechanics. Although these methods are proven successful for many applications, there is a grand challenge of improving their generalizability. This is particularly essential when data-driven models are employed within outer-loop applications like optimization. In this work, we put forth a physics-guided machine learning (PGML) framework that leverages the interpretable physics-based model with a deep learning model. Leveraging a concatenated neural network design from multi-modal data sources, the PGML framework is capable of enhancing the generalizability of data-driven models and effectively protects against or inform about the inaccurate predictions resulting from extrapolation. We apply the PGML framework as a novel model fusion approach combining the physics-based Galerkin projection model and long- to short-term memory (LSTM) network for parametric model order reduction of fluid flows. We demonstrate the improved generalizability of the PGML framework against a purely data-driven approach through the injection of physics features into intermediate LSTM layers. Our quantitative analysis shows that the overall model uncertainty can be reduced through the PGML approach, especially for test data coming from a distribution different than the training data. Moreover, we demonstrate that our approach can be used as an inverse diagnostic tool providing a confidence score associated with models and observations. The proposed framework also allows for multi-fidelity computing by making use of low-fidelity models in the online deployment of quantified data-driven models.

42 ENGINEERING↗

An ensemble of 48 physically perturbed model estimates of the 1/8° terrestrial water budget over the conterminous United States, 1980–2015

Terrestrial water budget (TWB) data over large domains are of high interest for various hydrological applications. Spatiotemporally continuous and physically consistent estimations of TWB rely on land surface models (LSMs). As an augmentation of the operational North American Land Data Assimilation System Phase 2 (NLDAS-2) four-LSM ensemble, this paper describes a dataset simulated from an ensemble of 48 physics configurations of the Noah LSM with multi-physics options (Noah-MP). The 48 Noah-MP physics configurations are selected to give a representative cross-section of commonly used LSMs for parameterizing runoff, atmospheric surface layer turbulence, soil moisture limitation on photosynthesis, and stomatal conductance. The dataset spans from 1980 to 2015 over the conterminous United States (CONUS) at a monthly temporal resolution and a 1/8° spatial resolution. The dataset variables include total evapotranspiration and its constituents (canopy evaporation, soil evaporation, and transpiration), runoff (the surface and subsurface components), as well as terrestrial water storage (snow water equivalent, four-layer soil water content from the surface down to 2 m, and the groundwater storage anomaly). The dataset is available at https://doi.org/10.5281/zenodo.7109816. Evaluations carried out in this study and previous investigations show that the ensemble per forms well in reproducing the observed terrestrial water storage, snow water equivalent, soil moisture, and runoff. Noah-MP complements the NLDAS models well, and adding Noah-MP consistently improves the NLDAS es timations of the above variables in most areas of CONUS. Besides, the perturbed-physics ensemble facilitates the identification of model deficiencies. The parameterizations of shallow snow, spatially varying groundwater dynamics, and near-surface atmospheric turbulence should be improved in future model versions.

54 ENVIRONMENTAL SCIENCES↗

HPC-Driven Modeling with ML-Based Surrogates for Magnon-Photon Dynamics in Hybrid Quantum System

Here, we introduce a hybrid computational framework that merges HPC-based numerical solvers with physics-informed ML surrogates for efficient modeling of magnon-photon interactions. By running short-duration, high-fidelity Maxwell-LLG simulations and feeding their results into an ML model, we substantially cut simulation time while achieving accurate predictions across larger spatiotemporal domains.

Accuracy↗

Spatiotemporal behavior and nonlinear dynamics in a phase conjugate resonator

The work described can be divided into two parts. The first part is an investigation of the transient behavior and stability property of a phase conjugate resonator (PCR) below threshold. The second part is an experimental and theoretical study of the PCR's spatiotemporal dynamics above threshold. The time-dependent coupled wave equations for four-wave mixing (FWM) in a photorefractive crystal, with two distinct interaction regions caused by feedback from an ordinary mirror, was used to model the transient dynamics of a PCR below threshold. The conditions for self-oscillation were determined and the solutions were used to define the PCR's transfer function and analyze its stability. Experimental results for the buildup and decay times confirmed qualitatively the predicted behavior. Experiments were carried out above threshold to study the spatiotemporal dynamics of the PCR as a function of Pragg detuning and the resonator's Fresnel number. The existence of optical vortices in the wavefront were identified by optical interferometry. It was possible to describe the transverse dynamics and the spatiotemporal instabilities by modeling the three-dimensional-coupled wave equations in photorefractive FWM using a truncated modal expansion approach.

Liu, Siuying Raymond↗

Comparison of Vertical Surface Deformation Estimates Derived From Space-Based Gravimetry, Ground-Based GPS, and Model-Based Hydrologic Loading Over Snow-Dominated Watersheds in the United States

Spatiotemporal variability in Earth's terrestrial water storage (TWS) causes changes in surface deformation. The potential for using ground-based Global Positioning System (GPS) vertical displacement observations for estimating TWS is explored through a comparison of vertical displacements derived from space-based gravimetric retrievals, ground-based GPS, and model-based hydrologic estimates. The study presented here focuses on two snow-dominated basins in the Western United States for the years 2003–2016. Seasonal variations are observed in the vertical displacements derived from all three data sets, and the variation is coherent with the changes in hydrologic loading. Good consistency is observed between any two of the three data sets with gravimetric retrievals and hydrologic model estimates providing the highest level of agreement (i.e., all examined stations with correlation coefficient R > 0.70). Vertical displacements derived from gravimetric retrievals and ground-based GPS yielded R > 0.70 for more than 89% of the stations. In addition, it is found that both GPS-derived and space-based, gravimetry-derived vertical displacements clearly reflected the impact of climate variation (i.e., heavy precipitation during 2010–2011 winter followed by prolonged drought). Vertical displacements derived from the hydrologic model highlighted the relatively large precipitation convergence phase during late 2010 to early 2011 at some stations but not the prolonged drought that followed. The results indicate that ground-based GPS observations of vertical displacement have the capability to capture variations in TWS changes, which can be systematically merged in conjunction with Gravity Recovery and Climate Experiment (GRACE) into a land surface model to improve TWS estimates in a follow-up study.

Gaohong Yin↗

OCO-2 Satellite-imposed Constraints on Terrestrial Biospheric CO2 Flux over South Asia

The spatiotemporal variability of terrestrial biospheric carbon dioxide (CO2) flux over South Asia is poorly understood. The inverse model “top-down” CO2 flux estimates which rely on atmospheric CO2 observational data are impeded by sparse in situ measurements over this region. The Orbiting Carbon Observatory 2 (OCO-2) provides much needed global retrievals of column-average CO2 dry-air mole fraction (XCO2) with the finest spatial and temporal resolution and highest sensitivity to surface fluxes available to-date. This study conducted global inverse model simulations as part of the second OCO-2 Multi-model Intercomparison Project assimilating version 9 of the OCO-2 XCO2 retrievals in land nadir (LN) and land glint (LG) observing modes and global in situ (IS) measurements. The four-dimensional variational assimilation system with the GEOS-Chem global chemical transport model was used to estimate CO2 fluxes from 2015 to 2018. We then assessed the spatiotemporal variability of optimized CO2 Net ecosystem Exchange (NEE) fluxes aggregated over the South Asia region. The most robust result found by assimilating OCO-2 observations was the constraints imposed on the seasonal cycle of terrestrial biospheric fluxes over South Asia. The seasonality of South Asian NEE estimated by assimilating OCO-2 or global IS data showed a larger seasonal cycle compared to the current understanding of NEE in this region (represented by the prior NEE used in the model). The satellite-in situ joint inversion (IS + LN + LG) led to land flux seasonal amplitude (absolute magnitude of the difference between peak and trough of monthly mean values over a year) of 4.0 PgC yr-1, compared to the prior model (1.5 PgC yr-1). Moreover, OCO-2 data imposed a phase shift in the seasonal cycle, resulting in a large CO2 source in April and a large uptake in September. Most of the features in the seasonal cycle imposed by OCO-2 data are in agreement with previous “top-down” studies assimilating regional aircraft observations. Nevertheless, we recommend a closer examination of the novel features highlighted by the OCO-2 column data over South Asia in future studies by conducting regional inverse modelling with denser in situ and vertically-resolved regional observations along with satellite data.

OCO-2↗

Atmospheric Dissolved Iron Depostiion to the Global Oceans: Effects of Oxalate-Promoted Fe Dissolution, Photochemical Redox Cycling, and Dust Mineralogy

Mineral dust deposition is suggested to be a significant atmospheric supply pathway of bioavailable iron (Fe) to Fe-depleted surface oceans. In this study, mineral dust and dissolved Fe (Fed) deposition rates are predicted for March 2009 to February 2010 using the 3-D chemical transport model GEOS-Chem implemented with a comprehensive dust-Fe dissolution scheme. The model simulates Fed production during the atmospheric transport of mineral dust taking into account inorganic and organic (oxalate)-promoted Fe dissolution processes, photochemical redox cycling between ferric (Fe(III)) and ferrous (Fe(II)) forms of Fe, dissolution of three different Fe-containing minerals (hematite, goethite, and aluminosilicates), and detailed mineralogy of windblown dust from the major desert regions. Our calculations suggest that during the yearlong simulation is approximately 0.26 Tg (1 Tg = 1012 g) of Fed was deposited to global oceanic regions. Compared to simulations only taking into account proton-promoted Fe dissolution, the addition of oxalate to the dust-Fe mobilization scheme increased total annual model-predicted Fed deposition to global oceanic regions by approximately 75%. The implementation of Fe(II)/Fe(III) photochemical redox cycling in the model allows for the distinction between different oxidation states of deposited Fed. Our calculations suggest that during the daytime, large fractions of Fed deposited to the global oceans is likely to be in Fe(II) form, while nocturnal fluxes of Fed are largely in Fe(III) form. Model simulations also show that atmospheric fluxes of Fed can be strongly influenced by the mineralogy of Fe-containing compounds. This study shows that Fed deposition to the oceans is controlled by total dust-Fe mass concentrations, mineralogy, the surface area of dust particles, atmospheric chemical composition, cloud processing, and meteorological parameters and exhibits complex and spatiotemporally variable patterns. Our study suggests that the explicit model representation of individual processes leading to Fed production within mineral dust are needed to improve the understanding of the atmospheric Fe cycle, and quantify the effect of dust-Fe on ocean biological productivity, carbon cycle, and climate.

Johnson, M. S.↗

Technical note: Using long short-term memory models to fill data gaps in hydrological monitoring networks

Abstract. Quantifying the spatiotemporal dynamics in subsurface hydrological flows over a long time window usually employs a network of monitoring wells. However, such observations are often spatially sparse with potential temporal gaps due to poor quality or instrument failure. In this study, we explore the ability of recurrent neural networks to fill gaps in a spatially distributed time-series dataset. We use a well network that monitors the dynamic and heterogeneous hydrologic exchanges between the Columbia River and its adjacent groundwater aquifer at the U.S. Department of Energy's Hanford site. This 10-year-long dataset contains hourly temperature, specific conductance, and groundwater table elevation measurements from 42 wells with gaps of various lengths. We employ a long short-term memory (LSTM) model to capture the temporal variations in the observed system behaviors needed for gap filling. The performance of the LSTM-based gap-filling method was evaluated against a traditional autoregressive integrated moving average (ARIMA) method in terms of error statistics and accuracy in capturing the temporal patterns of river corridor wells with various dynamics signatures. Our study demonstrates that the ARIMA models yield better average error statistics, although they tend to have larger errors during time windows with abrupt changes or high-frequency (daily and subdaily) variations. The LSTM-based models excel in capturing both high-frequency and low-frequency (monthly and seasonal) dynamics. However, the inclusion of high-frequency fluctuations may also lead to overly dynamic predictions in time windows that lack such fluctuations. The LSTM can take advantage of the spatial information from neighboring wells to improve the gap-filling accuracy, especially for long gaps in system states that vary at subdaily scales. While LSTM models require substantial training data and have limited extrapolation power beyond the conditions represented in the training data, they afford great flexibility to account for the spatial correlations, temporal correlations, and nonlinearity in data without a priori assumptions. Thus, LSTMs provide effective alternatives to fill in data gaps in spatially distributed time-series observations characterized by multiple dominant frequencies of variability, which are essential for advancing our understanding of dynamic complex systems.

54 ENVIRONMENTAL SCIENCES↗

Real-time motion tracking of three-dimensional objects

The problem in which the three-dimensional motion of an object corresponding to a known polyhedral model is to be computed using only the motion of edge features in a continuous stream of two-dimensional images is considered. Advantage is taken of the spatiotemporal density of the input signal and the limitations of long-range trajectory-prediction methods are avoided. Two parallel algorithms which use feature-based, short-range (spatiotemporally local) motion processes to achieve real-time tracking of modeled objects are presented. Both algorithms have been implemented and tested on a tightly coupled multiprocessor system consisting of an Aspex Pipe for low-level, image-feature computations and a Sequent Symmetry for high-level, model-based computations. An analysis is given of the actual performance limits of each method using the current hardware configuration.

Verghese, Gilbert↗

Statistical Downscaling of Climate Models for Solar Resource Assessment

This study presents the development of statistical models to efficiently downscale future projections of solar irradiance for solar energy applications. A climate data set simulated from a Regional Climate Model (RCM) obtained from the North American Coordinated Regional Climate Downscaling Experiment (NA-CORDEX) is selected as input to the statistical models to create high-resolution global horizontal irradiance (GHI) over the contiguous United States (CONUS). Our approach builds statistical downscaling models that (1) regrid RCM data (0.22 degree and daily spatiotemporal resolution), (2) correct bias of GHI projections, (3) downscale the future GHI project from daily-scale to hourly-scale, and (4) spatially downscale to generate GHI at 8-km resolution. To calibrate and validate the statistical models, we adapt and use the National Solar Radiation Database (NSRDB). Preliminary results show that the statistical downscaling approach downscales future projections of GHI under two climate scenarios (RCP4.5 and RCP8.5) with a nBIAS of 3%, nMAE of 34% and nRMSE of 46% estimated against NSRDB for the contiguous United State. This presentation will summarize the implemented methodology and validation results as well as future extension of this research.

climate data↗

In Situ Inference for Earth System Predictability

An understanding of future evolution in precipitation extremes is critical to numerous DOE mission questions. Extreme events are by nature short time-scale events that are difficult to diagnose in available model data. Accurate modeling of extreme events necessarily requires high spatial resolution at the storm scale locally. However, the environment in which storms grow is dependent on global, remote, processes. These complex spatiotemporal relationships are impossible to diagnose at resolutions required to accurately model storms responsible for extreme precipitation. At exascale, climate simulations will produce results at fine enough resolution to investigate these relationships. However, the resulting data from these simulations will be far too large to save for post-simulation analysis. We advocate for fitting statistical models inside the simulations as they run, a context known as in situ, which will facilitate scientific investigations using the full fine-scale data stream. Figure 1 shows an example of the type of model we could consider, a Bayesian hierarchical spatial regression model. Precipitation extremes at each grid cell are modeled using extreme value distributions. Since extremes are rare, fitting models to individual grid cells can result in high variance and poor estimates. Instead, the model can be made more robust by smoothing the parameters of the extreme value model across space. Additionally, the parameters themselves can be functionally linked to other variables elsewhere in the simulation. Thus, we can use the fine-scale data to build more robust models for extremes that link extreme behavior to other climate patterns.

54 ENVIRONMENTAL SCIENCES↗

In Situ Inference for Earth System Predictability

Focal Area: Focal Area 3: Insight gleaned from complex simulated data using AI, big data analytics, and other advanced methods, including explainable AI and physics- or knowledge-guided AI. Science Challenge: An understanding of future evolution in precipitation extremes is critical to numerous DOE mission questions. Extreme events are by nature short time-scale events that are difficult to diagnose in available model data. Accurate modeling of extreme events necessarily requires high spatial resolution at the storm scale locally. However, the environment in which storms grow is dependent on global, remote, processes. These complex spatiotemporal relationships are impossible to diagnose at resolutions required to accurately model storms responsible for extreme precipitation. At exascale, climate simulations will produce results at fine enough resolution to investigate these relationships. However, the resulting data from these simulations will be far too large to save for post-simulation analysis. We advocate for fitting statistical models inside the simulations as they run, a context known as in situ, which will facilitate scientific investigations using the full fine-scale data stream. Figure 1 shows an example of the type of model we could consider, a Bayesian hierarchical spatial regression model. Precipitation extremes at each grid cell are modeled using extreme value distributions. Since extremes are rare, fitting models to individual grid cells can result in high variance and poor estimates. Instead, the model can be made more robust by smoothing the parameters of the extreme value model across space. Additionally, the parameters themselves can be functionally linked to other variables elsewhere in the simulation. Thus, we can use the fine-scale data to build more robust models for extremes that link extreme behavior to other climate patterns.

54 ENVIRONMENTAL SCIENCES↗

Modeling Ring Current Proton Fluxes Using Artificial Neural Network and Van Allen Probe Measurements

Abstract Terrestrial ring current dynamics are a critical part of the near‐space environment, in that they directly drive geomagnetic field variations that control particle drifts, and define geomagnetic storms. The present study aims to specify a global and time‐varying distribution of ring current proton using geomagnetic indices and solar wind parameters with their history as input. We train an artificial neural network (ANN) model to reproduce proton fluxes measured by the Radiation Belt Storm Probes Ion Composition Experiment instrument onboard Van Allen Probes. By choosing optimal feature parameters and their history length, the model results show a high correlation and a small error between model specifications and satellite measurements. The modeled results well capture energy‐dependent proton dynamics in association with geomagnetic storms, including inward radial diffusion, acceleration and decay. Our ANN model produces proton fluxes with their corresponding 3D spatiotemporal variations, capturing the latitudinal distribution and local time asymmetry that are consistent with observations and that can further inform theory.

Li, Jinxing↗

Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource

Abstract Large-scale genomic resources can place genetic variation into an ecologically informed context. To advance our understanding of the population genetics of the fruit fly Drosophila melanogaster, we present an expanded release of the community-generated population genomics resource Drosophila Evolution over Space and Time (DEST 2.0; https://dest.bio/). This release includes 530 high-quality pooled libraries from flies collected across six continents over more than a decade (2009 to 2021), most at multiple time points per year; 211 of these libraries are sequenced and shared here for the first time. We used this enhanced resource to elucidate several aspects of the species' demographic history and identify novel signs of adaptation across spatial and temporal dimensions. For example, we showed that the spatial genetic structure of populations is stable over time, but that drift due to seasonal contractions of population size causes populations to diverge over time. We identified signals of adaptation that vary between continents in genomic regions associated with xenobiotic resistance, consistent with independent adaptation to common pesticides. Moreover, by analyzing samples collected during spring and fall across Europe, we provide new evidence for seasonal adaptation related to loci associated with pathogen response. Furthermore, we have also released an updated version of the DEST genome browser. This is a useful tool for studying spatiotemporal patterns of genetic variation in this classic model system.

Biochemistry & Molecular Biology↗

Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study

Molecular HIV surveillance is a promising public health strategy for curbing the HIV epidemic. Clustering technologies used by health departments to date are limited in their ability to infer/forecast cluster growth trajectories. Resolution of the spatiotemporal dynamics of clusters, through phylodynamic and phylogeographic modelling, is one potential strategy to develop a forecasting tool; however, the projected utility of this approach needs assessment. Prior to incorporating novel phylodynamic-based molecular surveillance tools, we sought to identify possible issues related to their feasibility, acceptability, interpretation, and utility. Qualitative data were collected via focus groups among field experts (n = 17, 52.9% female) using semi-structured, open-ended questions. Data were coded using an iterative process, first through the development of provisional themes and subthemes, followed by independent line-by-line coding by two coders. Most participants routinely used molecular methods for HIV surveillance. All agreed that linking molecular sequences to epidemiological data is important for improving HIV surveillance. We found that, in addition to methodological challenges, a variety of implementation barriers are expected in relation to the uptake of phylodynamic methods for HIV surveillance. The participants identified several opportunities to enhance current methods, as well as increase the usability and utility of promising works-in-progress.

59 BASIC BIOLOGICAL SCIENCES↗

[Vestibular compensation studies]

The following topics are reported: neurophysiological studies on MVN neurons during vestibular compensation; effects of spinal cord lesions on VNC neurons during compensation; a closed-loop vestibular compensation model for horizontally canal-related MVN neurons; spatiotemporal convergence in VNC neurons; contributions of irregularly firing vestibular afferents to linear and angular VOR's; application to flight studies; metabolic measures in vestibular neurons; immediate early gene expression following vestibular stimulation; morphological studies on primary afferents, central vestibular pathways, vestibular efferent projection to the vestibular end organs, and three-dimensional morphometry and imaging.

Perachio, Adrian A.↗

Learning to Count Grave Sites for Cemetery Observation Models With Satellite Imagery

Understanding how people occupy open spaces is important for research in support of population modeling, policy, national security, emergency response, and sustainability. For the past decade, there has been an increase in research toward capturing and reporting population dynamics and patterns of life at the building level and in some open public spaces such as cemeteries and parks. This is done through observation models developed from local sociocultural information acquired at various spatiotemporal scales to inform night, day, and episodic population occupancy estimates (people/1000 sq ft). Sociocultural information for cemeteries and parks is scarcely available and often collected manually. The process is not only marred by inconsistencies but is laborious and time consuming. In this study, we leverage convolutional neural networks (CNNs) and satellite imagery to derive grave site counts as proxy variables to support scalable and accurate sociocultural data required in a population observation model. Through a hybrid workflow (weak localization plus regression model), we characterize a large scale automation process to counting of grave sites. We evaluate and demonstrate the efficacy of proposed workflow using out-of-data set large satellite imagery and establish its broader impact on cemetery observation models.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Regional Subsidence Analysis Through a Multi-Scale Modeling Framework Based on Breakage Mechanics

Although poroelastic models are often used to explain the delay between subsurface fluid depletion and ground subsidence, inelastic compaction involving permanent changes of rock microstructure may exacerbate hydro-mechanical coupling, thus influencing the interpretation of measurements and long-term forecasts. Here, a multi-scale modeling approach is discussed, which accounts for the inherent connection between rock microstructure, hydraulic conductivity, and pore compaction. A constitutive model built within the framework of breakage mechanics is proposed to link the hydraulic conductivity of granular rocks with inelastic deformations and changes in grading caused by injection-depletion cycles at stress levels far from yielding. The proposed model has been incorporated into large-scale simulation frameworks, thus enabling the spatiotemporal mapping of regional subsidence through a hybrid, semi-analytical approach. Numerical results based on this strategy show that the model allows isolating near-field and far-field effects into the computation of land subsidence and can generate forecasts for different modeling scenarios (e.g., elastic and inelastic compaction, constant permeability, and concurrent change of compressibility and permeability). In particular, examples of simulations for the case of the Groningen gas field are discussed, showing the model capabilities to use both field measurements and laboratory tests for the generation of reasonable subsidence maps, without expensive computational costs. Results indicate that ignoring coupled inelastic effects has major consequences on the predicted timescale of subsidence. Specifically, while all the model scenarios produced similar long-term ground settlements, those ignoring breakage-dependent permeability changes result in a variation of the temporal window of residual subsidence of the order of several decades.

58 GEOSCIENCES↗