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At least 235 records · Page 13

Analysis of laser fluorosensor systems for remote algae detection and quantification

The development and performance of single- and multiple-wavelength laser fluorosensor systems for use in the remote detection and quantification of algae are discussed. The appropriate equation for the fluorescence power received by a laser fluorosensor system is derived in detail. Experimental development of a single wavelength system and a four wavelength system, which selectively excites the algae contained in the four primary algal color groups, is reviewed, and test results are presented. A comprehensive error analysis is reported which evaluates the uncertainty in the remote determination of the chlorophyll a concentration contained in algae by single- and multiple-wavelength laser fluorosensor systems. Results of the error analysis indicate that the remote quantification of chlorophyll a by a laser fluorosensor system requires optimum excitation wavelength(s), remote measurement of marine attenuation coefficients, and supplemental instrumentation to reduce uncertainties in the algal fluorescence cross sections.

Browell, E. V.↗

Reflectance model for quantifying chlorophyll a in the presence of productivity degradation products

A reflectance model developed to estimate chlorophyll a concentrations in the presence of marine colored dissolved organic matter, pheopigments, detritus, and bacteria is presented. Nomograms and lookup tables are generated to describe the effects of different mixtures of chlorophyll a and these degradation products on the R(412):R(443) and R(443):R(565) remote-sensing reflectance or irradiance reflectance ratios. These are used to simulate the accuracy of potential ocean color satellite algorithms, assuming that atmospheric effects have been removed. For the California Current upwelling and offshore regions, with chlorophyll a not greater than 1.3 mg/cu m, the average error for chlorophyll a retrievals derived from irradiance reflectance data for degradation product-rich areas was reduced from +/-61 percent to +/-23 percent by application of an algorithm using two reflectance ratios rather than the commonly used algorithm applying a single reflectance ratio.

Carder, K. L.↗

Remote sensing of benthic microalgal biomass with a tower-mounted multispectral scanner

A remote sensing instrument was mounted on a 50-ft tower overlooking North Inlet Estuary, South Carolina in order to conduct a remote sensing study of benthic microalgae. The instrument was programmed to take multispectral imagery data along a 90 deg horizontal frame in six spectral bands ranging from 400-1050 nm and had a ground resolution of about 3 cm. Imagery measurements were encoded in digital form on magnetic tape and were stored, decoded, and manipulated by computer. Correlation coefficients were calculated on imagery data and chlorophyll a concentrations derived from ground truth data. The most significant correlation occurred in the blue spectral band with numerical values ranging from -0.81 to -0.88 for three separate sampling periods. Mean values of chlorophyll a for a larger section of mudflat were estimated using regression equations. The scanner has provided encouraging results and promises to be a useful tool in sampling the biomass of intertidal benthic microalgae.

Jobson, D. J.↗

In situ phytoplankton absorption, fluorescence emission, and particulate backscattering spectra determined from reflectance

An inverse model was developed to extract the absortion and scattering (elastic and inelastic) properties of oceanic constituents from surface spectral reflectance measurements. In particular, phytoplankton spectral absorption coefficients, solar-stimulated chlorophyll a fluorescence spectra, and particle backscattering spectra were modeled. The model was tested on 35 reflectance spectra obtained from irradiance measurements in optically diverse ocean waters (0.07 to 25.35 mg/cu m range in surface chlorophyll a concentrations). The universality of the model was demonstrated by the accurate estimation of the spectral phytoplankton absorption coefficents over a range of 3 orders of magnitude (rho = 0.94 at 500 nm). Under most oceanic conditions (chlorophyll a less than 3 mg/cu m) the percent difference between measured and modeled phytoplankton absorption coefficents was less than 35%. Spectral variations in measured phytoplankton absorption spectra were well predicted by the inverse model. Modeled volume fluorescence was weakly correlated with measured chl a; fluorescence quantum yield varied from 0.008 to 0.09 as a function of environment and incident irradiance. Modeled particle backscattering coefficients were linearly related to total particle cross section over a twentyfold range in backscattering coefficents (rho = 0.996, n = 12).

Roesler, Collin S.↗

NASA Satellite Monitoring of Water Clarity in Mobile Bay for Nutrient Criteria Development

This project has demonstrated feasibility of deriving from MODIS daily measurements time series of water clarity parameters that provide coverage of a specific location or an area of interest for 30-50% of days. Time series derived for estuarine and coastal waters display much higher variability than time series of ecological parameters (such as vegetation indices) derived for land areas. (Temporal filtering often applied in terrestrial studies cannot be used effectively in ocean color processing). IOP-based algorithms for retrieval of diffuse light attenuation coefficient and TSS concentration perform well for the Mobile Bay environment: only a minor adjustment was needed in the TSS algorithm, despite generally recognized dependence of such algorithms on local conditions. The current IOP-based algorithm for retrieval of chlorophyll a concentration has not performed as well: a more reliable algorithm is needed that may be based on IOPs at additional wavelengths or on remote sensing reflectance from multiple spectral bands. CDOM algorithm also needs improvement to provide better separation between effects of gilvin (gelbstoff) and detritus. (Identification or development of such algorithm requires more data from in situ measurements of CDOM concentration in Gulf of Mexico coastal waters (ongoing collaboration with the EPA Gulf Ecology Division))

Blonski, Slawomir↗

A manifold learning perspective on surrogate modeling of nitrate concentration in the Kansas River

Abstract A non-linear surrogate model of nitrate concentration in the Kansas River (USA) is described. The model is an (almost) Piece-wise Linear response surface that provides a mean field approximation to the dynamics of the measured data for nitrate plus nitrite (target product) correlations to turbidity and chlorophyll-a concentrations (input variables). The method extends the United States Geological Survey’s linear procedures for surrogate data modeling allowing for better approximations for river systems exhibiting algal blooms due to nutrient-rich source waters. The model and visualization procedures illustrated in the Kansas River example should be generally applicable to many medium-size rivers in agricultural regions.

Tufillaro, Nicholas (ORCID:0009000628968832)↗

Are the World's Oceans Optically Different?

Regional differences in the Sea-viewing Wide Field-of-view Sensor chlorophyll algorithm uncertainty were observed in a large global data set containing coincident in situ measurements of chlorophyll a concentration (Chla) and spectral radiometry. The uncertainty was found to be systematic when the data were sorted by ocean: Atlantic, Pacific, Southern, and Indian Oceans. Artifacts associated with different instrumentation and analytical methods had been previously ruled out. Given these oceanic biases in the chlorophyll algorithm, we hypothesized that the oceans may be optically different, and their optical differences may be intrinsically related to regional differences in phytoplankton community structure or biogeochemical processes. The oceanic biases, originally observed using radiometric measurements, were independently verified using total absorption measurements in a subset of the data. Moreover, they were explained through oceanic differences in the absorption of colored detrital matter (CDM) and phytoplankton. Both effects were considered together in explaining the ocean biases through a stepwise linear regression analysis. Significant oceanic differences in the amount of CDM and in phytoplankton cell sizes and pigmentation would give rise to optical differences, but we raise a concern for the spatial coverage of the data. We do not suggest the application of ocean-based algorithms but rather emphasize the importance of consolidating regional data sets before reaching this conclusion.

Szeto, M.↗

Remote sensing of ocean color and detection of chlorophyll content

The chlorophyll enrichment of the water in an equatorial upwelling was surveyed and described with the aid of a radiometer specially designed for the airborne measurement of ocean color. A relation is proposed between airborne measurement of difference of albedos at two wavelengths in the blue and green, and the concentration of chlorophyll in the ocean.

Deschamps, P. Y.↗

Observing Ocean Ecosystem Responses to Volcanic Ash

Volcanic eruptions can be catastrophic events, particularly when they occur in inhabited coastal environments. They also play important roles in climate and biogeochemical cycles, including through nutrient deposition in the ocean. Volcanic ash studies in the ocean have focused on the phytoplankton response, generally quantifying changes in chlorophyll-a concentration. Many gaps remain in addressing fundamental questions regarding why volcanic ash deposition may enhance or limit both phytoplankton growth and/or drive community composition shifts. Here we outline a wide, multidisciplinary vision for monitoring volcanic eruptions near ocean ecosystems from satellites, including considerations for characteristics of airborne volcanic ash and ash geochemistry in seawater. Ultimately, observations beyond chlorophyll-a are needed to quantify phytoplankton communities (including harmful algal blooms) and possible impacts across higher trophic levels. We synthesize relevant research from volcanic studies as well as atmospheric and ocean sciences to identify the ‘known unknowns’ in ash-ecosystem studies. Our goal is to move toward an improved understanding of how real-time and near-real-time monitoring of volcanic eruptions can help address societally relevant questions.

volcano↗

Ultrafast laser filament-induced fluorescence for detecting uranium stress in Chlamydomonas reinhardtii

Abstract Plants and other photosynthetic organisms have been suggested as potential pervasive biosensors for nuclear nonproliferation monitoring. We demonstrate that ultrafast laser filament-induced fluorescence of chlorophyll in the green alga Chlamydomonas reinhardtii is a promising method for remote, in-field detection of stress from exposure to nuclear materials. This method holds an advantage over broad-area surveillance, such as solar-induced fluorescence monitoring, when targeting excitation of a specific plant would improve the detectability, for example when local biota density is low. After exposing C. reinhardtii to uranium, we find that the concentration of chlorophyll a, chlorophyll fluorescence lifetime, and carotenoid content increase. The increased fluorescence lifetime signifies a decrease in non-photochemical quenching. The simultaneous increase in carotenoid content implies oxidative stress, further confirmed by the production of radical oxygen species evidence in the steady-state absorption spectrum. This is potentially a unique signature of uranium, as previous work finds that heavy metal stress generally increases non-photochemical quenching. We identify the temporal profile of the chlorophyll fluorescence to be a distinguishing feature between uranium-exposed and unexposed algae. Discrimination of uranium-exposed samples is possible at a distance of $$\sim $$ ∼ 35 m with a single laser shot and a modest collection system, as determined through a combination of experiment and simulation of distance-scaled uncertainty in discriminating the temporal profiles. Illustrating the potential for remote detection, detection over 125 m would require 100 laser shots, commensurate with the detection time on the order of 1 s.

54 ENVIRONMENTAL SCIENCES↗

Phytoplankton-Fluorescence-Lifetime Vertical Profiler

A battery-operated optoelectronic instrument is designed to be lowered into the ocean to measure the intensity and lifetime of fluorescence of chlorophyll A in marine phytoplankton as a function of depth from 0 to 300 m. Fluorescence lifetimes are especially useful as robust measures of photosynthetic productivity of phytoplankton and of physical and chemical mechanisms that affect photosynthesis. The knowledge of photosynthesis in phytoplankton gained by use of this and related instruments is expected to contribute to understanding of global processes that control the time-varying fluxes of carbon and associated biogenic elements in the ocean. The concentration of chlorophyll in the ocean presents a major detection challenge because in order to obtain accurate values of photosynthetic parameters, the intensity of light used to excite fluorescence must be kept very low so as not to disturb the photosynthetic system. Several innovations in fluorometric instrumentation were made in order to make it possible to reach the required low detection limit. These innovations include a highly efficient optical assembly with an integrated flow-through sample interface, and a high-gain, low-noise electronic detection subsystem. The instrument also incorporates means for self-calibration during operation, and electronic hardware and software for control, acquisition and analysis of data, and communications. The electronic circuitry is highly miniaturized and designed to minimize power demand. The instrument is housed in a package that can withstand the water pressure at the maximum depth of 300 m. A light-emitting diode excites fluorescence in the sample flow cell, which is placed at one focal point of an ellipsoidal reflector. A photomultiplier tube is placed at the other focal point. This optical arrangement enables highly efficient collection of fluorescence emitted over all polar directions. Fluorescence lifetime is measured indirectly, by use of a technique based on the same principle as the one described in "Fluorometer for Analysis of Photosynthesis in Phytoplankton" (SSC-00110), NASA Tech Briefs, Vol. 24, No. 1 (November 2000), page 79. The excitation is modulated at a frequency of 70 MHz, and the phase shift between the excitation light and the emitted fluorescence is measured by a detection method in which the 70 MHz signal is down-converted to a 400 Hz signal. The fluorescence lifetime can be computed from the known relationship among the fluorescence lifetime, phase shift, and modulation frequency

Fernandez, Salvador M.↗

Bio-Optical and Remote Sensing Observations in Chesapeake Bay

The high temporal and spatial resolution of satellite ocean color observations will prove invaluable for monitoring the health of coastal ecosystems where physical and biological variability demands sampling scales beyond that possible by ship. However, ocean color remote sensing of Case 2 waters is a challenging undertaking due to the optical complexity of the water. The focus of this SIMBIOS support has been to provide in situ optical measurements from Chesapeake Bay (CB) and adjacent mid-Atlantic bight (MAB) waters for use in algorithm development and validation efforts to improve the satellite retrieval of chlorophyll (chl a) in Case 2 waters. CB provides a valuable site for validation of data from ocean color sensors for a number of reasons. First, the physical dimensions of the Bay (> 6,500 km2) make retrievals from satellites with a spatial resolution of approx. 1 km (i.e., SeaWiFS) or less (i.e., MODIS) reasonable for most of the ecosystem. Second, CB is highly influenced by freshwater flow from major rivers, making it a classic Case 2 water body with significant concentrations of chlorophyll, particulates and chromophoric dissolved organic matter (CDOM) that highly impact the shape of reflectance spectra.

Harding, Lawrence W., Jr.↗

Evaluation and Validation of Case 2 Algorithms in Chesapeake Bay

The high temporal and spatial resolution of satellite ocean color observations will prove invaluable for monitoring the health of coastal ecosystems where physical and biological variability demands sampling scales beyond that possible by ship. However, ocean color remote sensing of Case 2 waters is a challenging undertaking due to the optical complexity of the water. The focus of this SIMBIOS support has been to provide in situ optical measurements form Chesapeake Bay (CB) and adjacent mid-Atlantic bight (MAB) waters for use in algorithm development and validation efforts to improve the satellite retrieval of chlorophyll (chl a) in Case 2 waters. CB provides a valuable site for validation of data from ocean color sensors for a number of reasons. First, the physical dimensions of the Bay (greater than 6,500 square kilometers) make retrievals from satellites with a spatial resolution of approximately 1 kilometer (i.e., SeaWiFS) or less (i.e., MODIS) reasonable for most of the ecosystem. Second, CB is highly influenced by freshwater flow from major rivers, making it a classic Case 2 water body with significant concentrations of chlorophyll, particulates and chromophoric dissolved organic matter (CDOM) that highly impact the shape of reflectance spectra. Finally, past and ongoing research efforts provided an expensive data set of optical observations that support the goal of this project.

Harding, Lawrence W., Jr.↗

The effect of signal noise on the remote sensing of Foliar biochemical concentration

Spectral measurements made using an imaging spectrometer contain systematic and random noise, while the former can be corrected the latter remains a source of error in the remotely sensed signal. A number of investigators have tried to determine the signal-to-noise-ratio (SNR) of the instrument, or the resultant imagery. However, the level of noise at which spectra are too noisy to be useful is not usually determined. The first attempt was by Goetz and Calvin, who suggested that the depth of the absorption feature should be at least an order of magnitude greater than the noise and more recently Dekker suggested a SNR of around 600:1 was required in visible/near infrared wavelengths to measure a 1/gl change in chlorophyll a concentration water. The wide range of applications of imaging spectroscopy make it difficult to set SNR specifications as they are dependent on a number of factors, one of the most important being reflectance of a particular target. For example, the SNR of imagery for vegetated targets is relatively low simply because vegetation has a relatively low level of reflectance. The Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) is being used to estimate the concentration of biochemicals within vegetation canopies. This paper reports a study undertaken to identify first, wavebands that were highly correlated with foliar biochemical concentration and second, to determine how sensitive these correlations were to sensor noise.

Smith, Geoffrey M.↗

Long-Term Time Series of Remote Sensing Observations for Development of Regulatory Water Quality Standards

Water quality standards in the U.S. consist of: designated uses (the services that a water body provides; e.g., drinking water, aquatic life, harvestable species, recreation) . criteria that define the environmental conditions that must be maintained to support the uses For estuaries and coastal waters in the Gulf of Mexico, there are no numeric (quantitative) criteria to protect designated uses from effects of nutrients. This is largely due to the absence of adequate data that would quantitatively link biological conditions to nutrient concentrations. The Gulf of Mexico Alliance, an organization fostering collaboration between the Gulf States and U.S. Federal agencies, has identified the development of the numeric nutrient criteria as a major step leading to reduction in MODIS Products Figure 6. Map of the Mobile Bay with a yellow patch indicating the Bon Secour Bay area selected in this study for averaging water clarity parameters retrieved from MODIS datasets. nutrient inputs to coastal ecosystems. Nutrient enrichment in estuaries and coastal waters can be quantified based on response variables that measure phytoplankton biomass and water clarity. Long-term, spatially and temporally resolved measurements of chlorophyll a concentration, total concentration of suspended solids, and water clarity are needed to establish reference conditions and to quantify stressor-response relationships.

Blonski, Slawomir↗

Phytoplankton Diversity and Chemotaxonomy in Contrasting North Pacific Ecosystems

Background. Phytoplankton is the base of majority of ocean ecosystems. It is responsible for half of the global primary production, and different phytoplankton taxa have a unique role in global biogeochemical cycles. In addition, phytoplankton abundance and diversity are highly susceptible to climate induced changes, hence monitoring of phytoplankton and its diversity is important and necessary. Methods. Water samples for phytoplankton and photosynthetic pigment analyses were collected in boreal winter 2017, along transect in the North Pacific Subtropical Gyre (NPSG) and the California Current System (CCS). Phytoplankton community was analyzed using light and scanning electron microscopy and photosynthetic pigments by high-performance liquid chromatography. To describe distinct ecosystems, monthly average satellite data of MODIS Aqua Sea Surface temperature and Chlorophyll a concentration, as well as Apparent Visible Wavelength were used. Results. A total of 207 taxa have been determined, mostly comprised of coccolithophores (35.5%), diatoms (25.2%) and dinoflagellates (19.5%) while cryptophytes, phytoflagellates and silicoflagellates were included in the group ``others" (19.8%). Phytoplankton spatial distribution was distinct, indicating variable planktonic dispersal rates and specific adaptation to ecosystems. Dinoflagellates, and nano-scale coccolithophores dominated NPSG, while micro-scale diatoms, and cryptophytes prevailed in CCS. A clear split between CCS and NPSG is evident in dendogram visualising LINKTREE constrained binary divisive clustering analysis done on phytoplankton counts and pigment oncentrations. Of all pigments determined, alloxanthin, zeaxanthin, divinyl chlorophyll b and lutein have highest correlation to phytoplankton counts. Conclusion. Combining chemotaxonomy and microscopy is an optimal method to determine phytoplankton diversity on a large-scale transect. Distinct communities between the two contrasting ecosystems of North Pacific reveal phytoplankton groups specific adaptations to trophic state, and support the hypothesis of shift from microto nano-scale taxa due to sea surface temperatures rising, favoring stratification and oligotrophic conditions.

oceanography↗

Event-scale relationships between surface velocity, temperature and chlorophyll in the coastal ocean, as seen by satellite

The overall goal of this project was to increase our understanding of processes which determine the temporally varying distributions of surface chlorophyll pigment concentration and surface temperature in the California Current System (CCS) on the time-scale of 'events', i.e., several days to several weeks. We also proposed to investigate seasonal and regional differences in these events. Additionally, we proposed to evaluate methods of estimating surface velocities and horizontal transport of pigment and heat from sequences of AVHRR and CZCS images. The four specific objectives stated in the original proposal were to: (1) test surface current estimates made from sequences of both SST and color images using variations of the statistical method of Emery et al. (1986) and estimate the uncertainties in these satellite-derived surface currents; (2) characterize the spatial and temporal relationships of chlorophyll and temperature in rapidly evolving features for which adequate imagery exist and evaluate the contribution of these events to monthly and seasonal averages; (3) use the methods tested in (1) to determine the nature of the velocity fields in the CCS; and (4) compare the currents, temperature, and currents in different seasons and in different geographic regions.

Strub, P. Ted↗

Chlorophyll-a Algorithms for Oligotrophic Oceans: A Novel Approach Based on Three-Band Reflectance Difference

A new empirical algorithm is proposed to estimate surface chlorophyll-a concentrations (Chl) in the global ocean for Chl less than or equal to 0.25 milligrams per cubic meters (approximately 77% of the global ocean area). The algorithm is based on a color index (CI), defined as the difference between remote sensing reflectance (R(sub rs), sr(sup -1) in the green and a reference formed linearly between R(sub rs) in the blue and red. For low Chl waters, in situ data showed a tighter (and therefore better) relationship between CI and Chl than between traditional band-ratios and Chl, which was further validated using global data collected concurrently by ship-borne and SeaWiFS satellite instruments. Model simulations showed that for low Chl waters, compared with the band-ratio algorithm, the CI-based algorithm (CIA) was more tolerant to changes in chlorophyll-specific backscattering coefficient, and performed similarly for different relative contributions of non-phytoplankton absorption. Simulations using existing atmospheric correction approaches further demonstrated that the CIA was much less sensitive than band-ratio algorithms to various errors induced by instrument noise and imperfect atmospheric correction (including sun glint and whitecap corrections). Image and time-series analyses of SeaWiFS and MODIS/Aqua data also showed improved performance in terms of reduced image noise, more coherent spatial and temporal patterns, and consistency between the two sensors. The reduction in noise and other errors is particularly useful to improve the detection of various ocean features such as eddies. Preliminary tests over MERIS and CZCS data indicate that the new approach should be generally applicable to all existing and future ocean color instruments.

Hu, Chuanmin↗