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At least 235 records · Page 13

Building a genome-based understanding of bacterial pH preferences

The environmental preferences of many microbes remain undetermined. This is the case for bacterial pH preferences, which can be difficult to predict a priori despite the importance of pH as a factor structuring bacterial communities in many systems. We compiled data on bacterial distributions from five datasets spanning pH gradients in soil and freshwater systems (1470 samples), quantified the pH preferences of bacterial taxa across these datasets, and compiled genomic data from representative bacterial taxa. While taxonomic and phylogenetic information were generally poor predictors of bacterial pH preferences, we identified genes consistently associated with pH preference across environments. We then developed and validated a machine learning model to estimate bacterial pH preferences from genomic information alone, a model that could aid in the selection of microbial inoculants, improve species distribution models, or help design effective cultivation strategies. More generally, we demonstrate the value of combining biogeographic and genomic data to infer and predict the environmental preferences of diverse bacterial taxa.

59 BASIC BIOLOGICAL SCIENCES↗

Ozone data and mission sampling analysis

A methodology was developed to analyze discrete data obtained from the global distribution of ozone. Statistical analysis techniques were applied to describe the distribution of data variance in terms of empirical orthogonal functions and components of spherical harmonic models. The effects of uneven data distribution and missing data were considered. Data fill based on the autocorrelation structure of the data is described. Computer coding of the analysis techniques is included.

Robbins, J. L.↗

The transport of nitric oxide by the mean circulation and planetary waves

The effects of planetary waves on atmospheric nitric oxide (NO) concentration were investigated using a time-dependent numerical model. The model is used to calculate planetary wave and zonal mean winds, which in turn are used to calculate mean and perturbation NO distribution. The time-dependent model is used to determine equilibrium NO distributions resulting from time-dependent lower boundary planetary wave forcings. The factors which contribute to the zonal mean NO concentration are examined. NO chemistry is modelled using a simplified source sink approach. Changes in the initial NO distribution which result from the addition of planetary-wave winds are described. Planetary waves are found to induce a wavelike structure in the NO distribution which resembles that derived from observational data. These waves affect the NO concentration through wave-induced changes in the mean meridional circulation and through the NO perturbation induuced by the wave winds themselves.

Jones, G. A.↗

Atmospheric measurements using the LAMP lidar during the LADIMAS campaign

The results of the LAtitudinal DIstribution of Middle Atmosphere Structure (LADIMAS) experiment have provided a unique data set to improve our understanding of the middle atmosphere. The project included shipboard and rocket range coordinated measurements between 70 deg N to 65 deg S to study the structure, dynamics, and chemistry of the atmosphere. Results on important dynamical processes, such as gravity waves, tidal components, as well as the formation of the layers of meteoric ion and neutral species, were obtained with lidar, digisonde, microwave radiometer, and spectrometers. The cooperative study of the atmosphere was undertaken by researchers from several laboratories, including Penn State University (PSU), University Bonn, University Wuppertal, Lowell University, and others. Several of the parameters studied have never been measured before over such a wide range of latitudes. Instruments were assembled aboard the German research vessel RV POLARSTERN while this vessel was sailing from the Arctic to the Antarctic seas between 8 Oct. 1991 - 2 Jan. 1992. This paper presents an introduction to the data gathered by the PSU investigation with the Lidar Atmospheric Measurements Program (LAMP) lidar.

Philbrick, C. R.↗

Expedite the Processing of Unpressurized Payloads to the International Space Station Using the ExPRESS Pallet

The Expedite the PRocessing of Experiments to Space Station (ExPRESS) Pallet will be used as an experiment platform for external/unpressurized payloads to be flown aboard the International Space Station (ISS). The purpose of the ExPRESS Pallet is to provide an easy access to the ISS for Scientific Investigators that require an external platform for their experiment hardware. As the name of the ExPRESS Pallet implies, the objective of the ExPRESS program is to provide a simplified integration process in a short time period (24 months) for payloads to be flown on the ISS. The ExPRESS Pallet provides unique opportunities for research across many science disciplines, including earth observation, communications, solar and deep space viewing, and long-term exposure. The ExPRESS Pallet provides access to Ram, Wake, Nadir, Zenith and Earth Limb for viewing and exposure to the space environment. The ExPRESS Pallet will provide standard physical payload interfaces, and a standard integration template. The ExPS consists of the Pallet structure, payload Adapters, a subsystem assembly that includes data controller, power distribution and conversion, and Extra Vehicular Robotics compatibility. The ExPRESS Pallet provides the capability to changeout payloads on-orbit via the ExPRESS Pallet Adapter (ExPA). The following paragraphs will describe the Services and Accommodations available to the Payload developers by the ExPRESS Pallet and a brief description of the Integration process. More detailed information on the ExPRESS Pallet can be found in the ExPRESS Pallet Payload Accommodations Handbook, SSP 52000-PAH-EPP.

Bacskay, Allen S.↗

Expected Improvements in VLBI Measurements of the Earth's Orientation

Measurements of the Earth s orientation since the 1970s using space geodetic techniques have provided a continually expanding and improving data set for studies of the Earth s structure and the distribution of mass and angular momentum. The accuracy of current one-day measurements is better than 100 microarcsec for the motion of the pole with respect to the celestial and terrestrial reference frames and better than 3 microsec for the rotation around the pole. VLBI uniquely provides the three Earth orientation parameters (nutation and UTI) that relate the Earth to the extragalactic celestial reference frame. The accuracy and resolution of the VLBI Earth orientation time series can be expected to improve substantially in the near future because of refinements in the realization of the celestial reference frame, improved modeling of the troposphere and non-linear station motions, larger observing networks, optimized scheduling, deployment of disk-based Mark V recorders, full use of Mark IV capabilities, and e-VLBI. More radical future technical developments will be discussed.

Ma, Chopo↗

Liquid Water Cloud Properties During the Polarimeter Definition Experiment (PODEX)

We present retrievals of water cloud properties from the measurements made by the Research Scanning Polarimeter (RSP) during the Polarimeter Definition Experiment (PODEX) held between January 14 and February 6, 2013. The RSP was onboard the high-altitude NASA ER-2 aircraft based at NASA Dryden Aircraft Operation Facility in Palmdale, California. The retrieved cloud characteristics include cloud optical thickness, effective radius and variance of cloud droplet size distribution derived using a parameter-fitting technique, as well as the complete droplet size distribution function obtained by means of Rainbow Fourier Transform. Multi-modal size distributions are decomposed into several modes and the respective effective radii and variances are computed. The methodology used to produce the retrieval dataset is illustrated on the examples of a marine stratocumulus deck off California coast and stratus/fog over California's Central Valley. In the latter case the observed bimodal droplet size distributions were attributed to two-layer cloud structure. All retrieval data are available online from NASA GISS website.

Electromagnetic scattering↗

National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions

A Think-Tank Meeting was convened by the National Cancer Institute (NCI) to solicit experts’ opinion on the development and application of multi-omic single-cell analyses, and especially single-cell proteomics, to improve the development of a new generation of biomarkers for cancer risk, early detection, diagnosis, prognosis as well as to discuss the discovery of new targets for prevention and therapy. It is anticipated that such markers and targets will be based on cellular, subcellular, molecular and functional aberrations within the lesion and within individual cells. Additionally, single-cell proteomic data will be essential for the establishment of new tools that with searchable and scalable features that include spatial and temporal cartographies of premalignant and malignant lesions. Challenges and potential solutions that were discussed included: • The best way/s to analyze single-cells from fresh and preserved tissue • Detection and analysis of secreted molecules and from single cells, especially from a tissue slice • Detection of new, previously undocumented cell type/s in the premalignant and early stage cancer tissue microenvironment • Multi-omic integration of data to support and inform proteomic measurements • Subcellular organelles – identifying abnormal structure, function, distribution and location within individual premalignant and malignant cells • How to improve the dynamic range of single-cell proteomic measurements for discovery of differentially expressed proteins and their post translational modifications (PTM) • The depth of coverage measured concurrently using single-cell techniques • Quantitation - absolute or semiquantitative? • Single methodology or multiplexed combinations? • Application of analytical methods for identification of biologically significant subsets • Data visualization of N-dimensional datasets • How to construct intercellular signaling networks in individual cells within premalignant tumor microenvironments (TME) • Associations between intrinsic cellular processes and extrinsic stimuli • How to predict cellular responses to stress inducing stimuli • Identification of new markers for prediction of progression from precursor, benign and localized lesions to invasive cancer, based on spatial and temporal changes within individual cells • Identification of new targets for immunoprevention or immunotherapy – identification of neoantigens and surfactome of individual cells within a lesion

59 BASIC BIOLOGICAL SCIENCES↗

Skylab and ERTS-1 investigations of coastal land use and water properties

The author has identified the following significant results. ERTS-1 multispectral scanner and Skylab's S190A, S190B, and S192 data products were evaluated for their utility in studying current circulation, suspended sediment concentrations and pollution dispersal in Delaware Bay and in mapping coastal vegetation and land use. Imagery from the ERTS-1 MSS, S190A and S190B cameras shows considerable detail in water structure, circulation, suspended sediment distribution and within waste disposal plumes in shelf waters. These data products were also used in differentiating and mapping twelve coastal vegetation and land use classes. The spatial resolution of the S190A multispectral facility appears to be about 30 to 70 meters while that of the S190B earth terrain camera is about 10 to 30 meters. Such resolution, along with good cartographic quality, indicates a considerable potential for mapping coastal land use and monitoring water properties in estuaries and on the continental shelf. The ERTS-1 MSS has a resolution of about 70-100 meters. Moreover, its regular 18-day cycle permits observation of important changes, including the environmental impact of coastal zone development on coastal vegetation and ecology.

Klemas, V.↗

Wildfire Segmentation From Remotely Sensed Data Using Quantum-Compatible Conditional Vector Quantized-Variational Autoencoders

Wildfires represent a critical environmental hazard with multifaceted implications for ecosystems, communities, and public health [1]. The escalating frequency and intensity of wildfires globally have intensified the urgency for robust segmentation methodologies to facilitate effective mitigation, response, and recovery strategies [2]. Accurate wildfire segmentation is pivotal for delineating fire boundaries, assessing progression patterns, and prioritizing resource allocation during emergency scenarios. Furthermore, precise segmentation enables stakeholders, including policymakers, environmental scientists, and emergency responders, to formulate evidence-based strategies, thereby minimizing socio-economic disruptions and ecological degradation. Consequently, advancing wildfire segmentation techniques through innovative technological interventions remains a paramount research imperative. Although foundational in wildfire segmentation, traditional deterministic models exhibit inherent limitations that compromise their efficacy in dynamic and uncertain environments. These models often operate on rigid algorithms prioritizing deterministic classifications, thereby overlooking the inherent complexities and uncertainties associated with wildfire behavior and satellite data variability. Such deterministic frameworks tend to produce oversimplified representations that fail to capture the intricate nuances of evolving fire dynamics, spatial heterogeneity, and environmental interactions [1]. Consequently, the deterministic approach’s propensity for uncertainty collapsing [1, 3] hampers the accuracy, reliability, and applicability of segmentation outcomes in real-world scenarios. Contrastingly, stochastic models offer a more nuanced and adaptable framework for wildfire segmentation. By integrating probabilistic elements into the modeling paradigm, stochastic approaches, particularly probabilistic approaches such as variational auto encoders (VAEs) [4], facilitate comprehensive uncertainty assessment, enabling researchers to quantify and incorporate uncertainties into segmentation outcomes effectively. This probabilistic nature empowers stochastic models to encapsulate variability, account for data inconsistencies, and adapt to evolving environmental conditions, enhancing segmentation accuracy, reliability, and robustness. Embracing stochastic methodologies thus catalyzes advancements in wildfire science by fostering a more holistic, adaptive, and resilient segmentation framework. Despite VAEs demonstrating significant promise in various applications, they come with inherent limitations that have garnered attention within the machine learning community. One of the primary drawbacks lies in their reliance on static priors, which essentially assume a fixed distribution for latent variables, thereby limiting the model’s flexibility to capture complex data structures effectively [5]. This static nature leads to suboptimal representations, especially when dealing with complex and high-dimensional data. Additionally, VAEs often struggle with generating sharp and realistic samples, a phenomenon commonly referred to as mode collapse [5, 7, 6]. Furthermore, the optimization process in VAEs, which involves balancing the reconstruction loss and the regularization term, can sometimes be challenging to fine-tune [7]. In recent efforts to address these shortcomings, alternative approaches like Vector Quantized Variational Auto encoders(VQ-VAEs) [7], address the challenges by incorporating discrete latent variables and leveraging techniques that enhance the quality and diversity of generated samples while maintaining efficient training dynamics. VQ-VAEs propose a dynamic prior distribution generation mechanism that diverges from the static priors commonly associated with traditional VAEs. This dynamic approach allows for more adaptive and context-aware latent variable representations, thereby potentially capturing complex data structures more effectively. Unlike autoregressive prior models such as PixelCNN, which, despite their ability to model dependencies across data dimensions, suffer from significant computational inefficiencies and lack flexibility in handling diverse datasets. In our work, we propose to use a generative quantum-compatible approach to help alleviate the shortcomings of autoregressive prior model in VQ-VAEs. Restricted Boltzmann Machines (RBMs) are a viable alternative prior model that can learn prior distributions in a faster and more flexible manner. In this research endeavor, we meticulously curate a state-of-the-art dataset leveraging satellite MODIS data in conjunction with VIIRS fire masks, derived from Fire Radiative Power (FRP), thereby encapsulating diverse wildfire scenarios and environmental contexts. We developed a conditional VQ-VAE architecture with the RBM prior model that is trained in a supervised manner for segmenting wildfire masks. This innovative approach synergistically harnesses deep learning capabilities, enabling the generation of segmentation maps characterized by heightened precision, granularity, and contextual relevance. Furthermore, replacing the autoregressive prior learning method proposed by the original VQ-VAE with a prior density approximation via quantum-compatible RBM facilitates expedited inference processes, augments flexibility in prior sampling, optimizes computational efficiency and establishes a groundbreaking benchmark in wildfire segmentation methodologies.

quantum machine learning↗

Müllerian mimicry and the coloration patterns of sympatric coral snakes

Abstract Coral snakes in the genus Micrurus are venomous, aposematic organisms that signal danger to predators through vivid coloration. Previous studies found that they serve as models to several harmless species of Batesian mimics. However, the extent to which Micrurus species engage in Müllerian mimicry remains poorly understood. We integrate detailed morphological and geographical distribution data to investigate if coral snakes are Müllerian mimics. We found that coloration is spatially structured and that Micrurus species tend to be more similar where they co-occur. Though long supposed, we demonstrate for the first time that coral snakes might indeed be Müllerian mimics as they show some convergence in coloration patterns. Additionally, we found that the length of red-coloured rings in Micrurus is conserved, even at large geographic scales. This finding suggests that bright red rings may be under more substantial stabilizing selection than other aspects of coloration and probably function as a generalized signal for deterring predators.

Evolutionary Biology↗

Up and down quark structure of the proton

We report an improved measurement of the valence u and d quark distributions from the forward-backward asymmetry in the Drell-Yan process using 8.6 fb − 1 of data collected with the D0 detector in p p ¯ collisions at s = 1.96 . This analysis provides the values of new structure parameters that are directly related to the valence up and down quark distributions in the proton. In other experimental results measuring the quark content of the proton, d quark contributions are mixed with those from other quark flavors. In this measurement, the u and d quark contributions are separately extracted by applying a factorization of the QCD and electroweak portions of the forward-backward asymmetry. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Distributed directory of named data elements in coordination namespace

An approach is described that provides a distributed directory structure within a storage of an information handling system (a local node). A request is received with the request corresponding to a shared virtual address. The shared virtual address that is shared amongst a number of nodes that includes the local node and some remote nodes. A Global Address Space Directory (GASD) is retrieved that corresponds to a global virtual address space. The GASD is stored in a Coordination Namespace that is stored in a memory that is distributed amongst the nodes. A mapping that is included in the GASD is used to determine the node where the shared virtual address currently resides. The shared virtual address is then accessed from the node where it currently resides.

Johns, Charles Ray↗

Atmospheric pressure, density, temperature and wind variations between 50 and 200 km

Data on atmospheric pressure, density, temperature and winds between 50 and 200 km were collected from sources including Meteorological Rocket Network data, ROBIN falling sphere data, grenade release and pitot tube data, meteor winds, chemical release winds, satellite data, and others. These data were analyzed by a daily difference method and results on the distribution statistics, magnitude, and spatial structure of the irregular atmospheric variations are presented. Time structures of the irregular variations were determined by the analysis of residuals from harmonic analysis of time series data. The observed height variations of irregular winds and densities are found to be in accord with a theoretical relation between these two quantities. The latitude variations (at 50 - 60 km height) show an increasing trend with latitude. A possible explanation of the unusually large irregular wind magnitudes of the White Sands MRN data is given in terms of mountain wave generation by the Sierra Nevada range about 1000 km west of White Sands. An analytical method is developed which, based on an analogy of the irregular motion field with axisymmetric turbulence, allows measured or model correlation or structure functions to be used to evaluate the effective frequency spectra of scalar and vector quantities of a spacecraft moving at any speed and at any trajectory elevation angle.

Justus, C. G.↗

The 1998-2000 SHADOZ (Southern Hemisphere ADditional OZonesondes) Tropical Ozone Climatology: Stratospheric and Tropospheric Ozone Variability and the Zonal Wave-One - 2

This is the second 'reference' or 'archival' paper for the SHADOZ (Southern Hemisphere Additional Ozonesondes) network and is a follow-on to the recently accepted paper with similar first part of title. The latter paper compared SHADOZ total ozone with satellite and ground-based instruments and showed that the equatorial wave-one in total ozone is in the troposphere. The current paper presents details of the wave-one structure and the first overview of tropospheric ozone variability over the southern Atlantic, Pacific and Indian Ocean basins. The principal new result is that signals of climate effects, convection and offsets between biomass burning seasonality and tropospheric ozone maxima suggest that dynamical factors are perhaps more important than pollution in determining the tropical distribution of tropospheric ozone. The SHADOZ data at ( ) are setting records in website visits and are the first time that the zonal view of tropical ozone structure has been recorded - thanks to the distribution of the 10 sites that make up this validation network.

Thompson, Anne M.↗

An evaluation of the suitability of ERTS data for the purposes of petroleum exploration

The author has identified the following significant results. ERTS-1 data give exploration geologists a new perspective for looking at the earth. The data are excellent for interpreting regional lithologic and structural relationships and quickly directing attention to areas of greatest exploration interest. Information derived from ERTS data useful for petroleum exploration include: linear features, general lithologic distribution, identification of various anomalous features, some details of structures controlling hydrocarbon accumulation, overall structural relationships, and the regional context of the exploration province. Many anomalies (particularly geomorphic anomalies) correlate with known features of petroleum exploration interest. Linears interpreted from the imagery that were checked in the field correlate with fractures. Bands 5 and 7 and color composite imagery acquired during the periods of maximum and minimum vegetation vigor are best for geologic interpretation. Preliminary analysis indicates that use of ERTS imagery can substantially reduce the cost of petroleum exploration in relatively unexplored areas.

Collins, R. J.↗

Future Goddard data processing and data distribution systems

This paper discusses the current systems used at the Goddard Space Flight Center for processing spacecraft data, as well as the future system prospects. While current systems rely significantly on minicomputers, future systems will emphasize workstations. Space data formats will become more structured, and the increased application of space data standards will permit greater flexibilities in ground data processing, data distribution and savings in mission and data operations.

Koschmeder, Louis A.↗

Implementation of Fiber Optic Sensing System on Sandwich Composite Cylinder Buckling Test

The National Aeronautics and Space Administration (NASA) Engineering and Safety Center Shell Buckling Knockdown Factor Project is a multicenter project tasked with developing new analysis-based shell buckling design guidelines and design factors (i.e., knockdown factors) through high-fidelity buckling simulations and advanced test technologies. To validate these new buckling knockdown factors for future launch vehicles, the Shell Buckling Knockdown Factor Project is carrying out structural testing on a series of large-scale metallic and composite cylindrical shells at the NASA Marshall Space Flight Center (Marshall Space Flight Center, Alabama). A fiber optic sensor system was used to measure strain on a large-scale sandwich composite cylinder that was tested under multiple axial compressive loads up to more than 850,000 lb, and equivalent bending loads over 22 million in-lb. During the structural testing of the composite cylinder, strain data were collected from optical cables containing distributed fiber Bragg gratings using a custom fiber optic sensor system interrogator developed at the NASA Armstrong Flight Research Center. A total of 16 fiber-optic strands, each containing nearly 1,000 fiber Bragg gratings, measuring strain, were installed on the inner and outer cylinder surfaces to monitor the test article global structural response through high-density real-time and post test strain measurements. The distributed sensing system provided evidence of local epoxy failure at the attachment-ring-to-barrel interface that would not have been detected with conventional instrumentation. Results from the fiber optic sensor system were used to further refine and validate structural models for buckling of the large-scale composite structures. This paper discusses the techniques employed for real-time structural monitoring of the composite cylinder for structural load introduction and distributed bending-strain measurements over a large section of the cylinder by utilizing unique sensing capabilities of fiber optic sensors.

FOS↗