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At least 235 records · Page 13
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

COMPASS-FME Synoptic Site Characterization

This dataset contains soil biogeochemical and physicochemical characterization data for the COMPASS-FME synoptic sites.This dataset also contains data for the paper Patel et al. 2025 "Transition zones at the changing coastal terrestrial-aquatic interface", https://doi.org/10.1029/2025JG008978.Coastal soils are a significant but highly uncertain component of global biogeochemical cycles. These systems experience unique spatial and temporal variability in biogeochemical processes, driven by wetland-to-upland gradients and hydrological fluctuations. We studied drivers of coastal soil variability (a) at regional scales and (b) across transects from upland forest to wetland, in two contrasting regions — Lake Erie, a freshwater lacustrine system, and Chesapeake Bay, a saltwater estuarine system. Salinity-related analytes were a key driver of soil variability, not just in the saltwater system, but surprisingly, also in the freshwater system. We had hypothesized linear trends in biogeochemical parameters along the TAI – however, contrary to expectations, transition soils were not consistently intermediate between upland and wetland endmembers; the non-monotonic trends of carbon, phosphorus, iron along our transects suggest that these are key analytes to study in our regions. Rapidly changing soil factors across coastal gradients provide insights into which soil processes may act as precursors to ecosystem shifts. Our comprehensive soil characterization across the coastal transects provides essential data for mechanistic modeling of ecosystem dynamics.The data are provided as processed, csv files. Raw data and processing scripts can be accessed on GitHub (https://github.com/COMPASS-DOE/cmps-soil_characterization).A note on the nomenclature: the experimental design represents three points along the coastal gradient -- upland, transition, and wetland. "wetland" is referred to as "marsh" in the corresponding paper. The two terms can be used interchangeably for the sites in this study.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Data for Roebuck et al. (2025), "Differences in dissolved organic matter composition between rivers and estuaries is conserved across freshwater and saltwater coastal regions"

Dissolved organic matter (DOM) in coastal surface waters influences local water quality and is an important component of biogeochemical cycling in coastal systems, but the processes that alter DOM composition along lower reaches of rivers and estuarine waters are poorly understood. Roebuck et al. (2025) leveraged a spatially distributed community sampling effort in coastal ecosystems across two regions to identify broad spatial drivers of surface water DOM composition and identify transferable trends between saltwater and freshwater coastal systems. Samples were collected by community members from 47 locations within the mid-Atlantic and Great Lakes coastal regions.This dataset includes:* A selection of commonly reported absorbance and fluorescence peaks normalized to dissolved organic carbon concentrations* Parallel factor output from the EC1 fluorescence datasets* A selection of commonly reported absorbance and fluorescence peaks * Spectral indices output from matlab script for absorbance and fluorescence datasets* CO2sys calculations of pH changes under varying temperatures and a constant salinity, DIC, and alkalinity concentrationAll data files are plain-text CSV (comma separated value) and no special software is required to read them.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Manuscript model outputs, model source code, and figure scripts: The role of geomorphology in mediating biomass allocation impacts on salt-marsh resilience and carbon accumulation

This data package provides model source code (C++), model outputs, and figure generation scripts (R) needed to reproduce the following manuscript: Bruns, Nicholas E., Genevieve L. Noyce, and Matthew L. Kirwan. "The Role of Geomorphology in Mediating Biomass Allocation Impacts on Salt-Marsh Resilience and Carbon Accumulation." Estuarine, Coastal and Shelf Science 327 (December 2025): 109549. https://doi.org/10.1016/j.ecss.2025.109549. This manuscript investigates how geomorphology mediates the impact of biomass allocation shifts on salt marsh persistence and carbon (C) sequestration under sea level rise. We use a 1-D soil-column model (Kirwan and Mudd 2012) to perform experiments across a range of static root:shoot ratios (RSR = 1-4) spanning observed values. The model explicitly simulates interactions between tidal inundation, productivity, inorganic sediment deposition, and organic matter accumulation. Experiments determine whether geomorphic feedbacks amplify, dampen, or leave unchanged the ecosystem response to biomass allocation shifts. A first experiment uses constant sea level rise (2.5 mm/yr) to examine equilibrium dynamics and their influence on carbon accumulation rates across different suspended sediment concentrations (SSC). A second set of experiments calculates threshold sea level rise rates for marsh drowning across RSR and SSC combinations. Final experiments apply accelerating sea level rise scenarios (2000-2200) derived from NOAA projections (Sweet et al. 2022) to generate an envelope of expected responses, quantifying the importance of biomass allocation shifts on marsh carbon accumulation and persistence. All experiments are repeated across SSC ranging from 5-50 mg/L to investigate how these interactions vary in micro-tidal marshes with different sediment supplies. Package contents: * README.txt with detailed description of package contents and instructions for reproducing manuscript figures and model outputs * R scripts for generating all manuscript figures * C++ baseline model code from Kirwan and Mudd (2012) * C++ source code for 4 experimental model variants used in the manuscript, extending above baseline code * Model input files (.csv, .txt) including sea level rise scenarios * Model output files (.txt) used in manuscript analyses Temporal coverage: Model simulations span years 1900-2200, with accelerating sea level rise scenarios for 2000-2200. Key variables: Root:shoot ratio, suspended sediment concentration, carbon accumulation rate, vertical accretion rate, marsh elevation, inundation depth, threshold sea level rise rate.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Carbon flux measurements from chambers collected between April to October 2023 at Old Woman Creek, Huron, Ohio

This dataset contains carbon dioxide and methane gas flux measurements collected via chamber sampling at Old Woman Creek National Estuarine Research Reserve in Huron, OH. These data were generated to understand temporal and vegetation patterns associated with wetland carbon cycling. Specifically, this dataset intends to answer how carbon dioxide and methane fluxes change monthly and hourly across sites with vegetation and without vegetation. Data includes chamber measurements that were measured in both sites with vegetation and without vegetation and that were collected hourly (7 AM to 7 PM or 5 AM to 10 PM and monthly (April to October). The file soilrespiration_data23.csv contains these data, and the metadata file (soilrespiration_chammetadata23.csv) and location metadata file (soilrespiration_locationmetadata23.csv) have information on locations where the chambers were placed and sampled in the wetland. Data processing was done on raw methane fluxes (Flux_CH4) to remove the influence of ebullition (Flux_CH4_ebullition) to get a diffusive flux (Flux_CH4_diffusive).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

TEMPEST3 surface runoff water chemistry and organic matter composition

Coastal flooding, driven by storm surges and sea level rise, can mobilize organic matter (OM) via runoff, while introducing compositionally distinct OM (e.g., estuarine OM) into the system. To understand event-scale OM dynamics, we monitored source waters and surface runoff during an ecosystem-scale field manipulation experiment, TEMPEST (Terrestrial Ecosystem Manipulation to Probe the Effects of Storm Treatments), in June 2024. The TEMPEST experiment is part of the COMPASS-FME (Coastal Observations, Mechanisms, and Predictions Across Systems and Scales – Field, Measurements, and Experiments) project and designed to investigate biogeochemical and ecological impacts of freshwater and seawater flooding on coastal terrestrial-aquatic interface ecosystems by simulating freshwater and seawater storm events in two 2000m2 coastal upland forest plots (freshwater and brackish seawater plots). The temporal coverage of this dataset is during the TEMPESTⅢ event (June 11-13, 2024). This dataset contains: - Surface runoff discharge measured by flumes - Sensor data (specific conductivity, salinity, dissolved oxygen, and temperature) - Particle size distribution - Total suspended sediment concentrations (TSS), particulate and dissolved organic carbon (POC, DOC) concentrations, total nitrogen and total dissolved nitrogen (TN, TDN) concentrations - Bulk particulate and dissolved OM compositions (stable C and N isotopes of particulates and optical measurements of chromophoric dissolved OM) - High resolution mass spectrometry analysis data - Water isotope data All data files are plain-text CSV (comma-separated value), and no special software is required to read them.

COMPASS-FME↗
DOE OSTI2024

AmeriFlux US-TaS Taylor Slough/Panhandle

This is the AmeriFlux version of the carbon flux data for the site US-TaS Taylor Slough/Panhandle. Site Description - This tower is located in the Florida Everglades, a unique community of stunted mangroves which receive seasonally driven freshwater inputs and wind-driven estuarine inputs

Malone, Sparkle↗
DOE OSTI2026

AmeriFlux FLUXNET-1F US-TaS Taylor Slough/Panhandle

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-TaS Taylor Slough/Panhandle. This is the FLUXNET version of the carbon flux data for the site US-TaS Taylor Slough/Panhandle produced by applying the standard ONEFlux (1F) software. Site Description - This tower is located in the Florida Everglades, a unique community of stunted mangroves which receive seasonally driven freshwater inputs and wind-driven estuarine inputs

Malone, Sparkle [Yale University]↗
DOE OSTI2025

Efficiently resolving the terrestrial-aquatic interface in E3SM with sub-grid methods to improve coastal simulations (Final Technical Report)

The broad goal of this project was to extend the capabilities of MPAS‐Ocean, the ocean component of DOE’s Energy Exascale Earth System Model (E3SM), to better resolve the hydrodynamics of the terrestrial‐aquatic interface without significantly increasing computing resource requirements. Specifically, our goal was to better resolve the small-scale features across the terrestrial‐aquatic interface which includes the low lying coastal floodplain and a dendritic network of hydraulically efficient channels connected to estuarine systems and back bays, barrier islands and high energy inlets. The processes driving flow across the terrestrial‐aquatic interface include upland and floodplain hydrology, tides, wind and atmospheric pressure (including coastally generated storm surge across continental shelves and within estuaries and bays), wind waves and water temperature and salinity gradients.

58 GEOSCIENCES↗
DOE OSTI2026

Assessing shellfish water exposure to fecal bacteria pollution in Salish Sea: three-dimensional modeling and implications for monitoring

Fecal bacteria (FB) contamination poses significant risks to shellfish safety and management in coastal and estuarine waters. Despite extensive pollution identification and correction efforts, FB contamination in shellfish-growing areas persists in the Salish Sea, highlighting the need to identify overlooked sources and better understand FB transport from riverine and shoreline inputs to shellfish beds. To address this, a high-resolution three-dimensional hydrodynamic model coupled with FB kinetics was developed and applied to a case study site in Salish Sea—Portage Bay—to simulate freshwater plume circulation, flushing dynamics, and bacterial transport. Daily FB loading from the major freshwater inflow—Nooksack River was generated by both linear interpolation and integrating a machine learning approach (XGBoost), trained on historical hydrological and meteorological data. The model successfully reproduced both the magnitude and seasonal variation of FB concentrations in Portage Bay for the year of 2021, demonstrating that simplified FB kinetics with first-order decay due to mortality was effective in this dynamic coastal environment with short flushing time. Model results identified the Nooksack River as the dominant far-field FB source, while scenario simulations showed that near-field coastal stormwater outfalls elevated local FB levels following rainfall, particularly under low-flow conditions. The XGBoost prediction provided comparable or superior accuracy to linear interpolation, particularly during periods of missing observational data, by capturing short-term variability and event-driven loading more effectively. Integrating data-driven riverine FB inputs with mechanistic coastal numerical modeling provides a robust framework for operational forecasting of shellfish bed exposure risk and supports adaptive monitoring and management of shellfish growing areas in the Salish Sea and similar coastal systems.

Salish Sea↗
DOE OSTI2022

Classification of Wetland Vegetation Based on NDVI Time Series from the HLS Dataset

Natural wetlands are intrinsically heterogeneous and typically composed of a mosaic of ecosystem patches with different vegetation types. Hydrological and biogeochemical processes in wetlands vary strongly among these ecosystem patches. To date, most remote sensing classification approaches for wetland vegetation either rely on coarse images that cannot capture the spatial variability of wetland vegetation or rely on very-high-resolution multi-spectral images that are detailed but very sporadic in time (less than once per year). This study aimed to use NDVI time series, generated from NASA’s HLS dataset, to classify vegetation patches. We demonstrate our approach at a temperate, coastal lake, estuarine marsh. To classify vegetation patches, a standard time series library of the four land-cover patch types was built from referencing specific locations that were identified as “pure” pixels. These were identified using a single-time high-resolution image. We calculated the distance between the HLS-NDVI time series at each pixel and the “pure”-pixel standards for each land-cover type. The resulting true-positive classified rate was >73% for all patch types other than water lily. The classification accuracy was higher in pixels of a more uniform composition. A set of vegetation maps was created for the years 2016 to 2020 at our research site to identify the vegetation changes at the site as it is affected by rapid water elevation increases in Lake Erie. Our results reveal how changes in water elevation have changed the patch distribution in significant ways, leading to the local extinction of cattail by 2019 and a continuous increase in the area cover of water lily patches.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Mixture Effects of Per- and Polyfluoroalkyl Substances on Embryonic and Larval Sheepshead Minnows ( Cyprinodon variegatus )

Per- and polyfluoroalkyl substances (PFAS) are ubiquitous and persistent environmental contaminants originating from many everyday products. Perfluorooctane sulfonic acid (PFOS) and perfluorooctanoic acid (PFOA) are two PFAS that are commonly found at high concentrations in aquatic environments. Both chemicals have previously been shown to be toxic to fish, as well as having complex and largely uncharacterized mixture effects. However, limited information is available on marine and estuarine species. In this study, embryonic and larval sheepshead minnows (Cyprinodon variegatus) were exposed to several PFAS mixtures to assess lethal and sublethal effects. PFOS alone was acutely toxic to larvae, with a 96 h LC50 of 1.97 mg/L (1.64–2.16). PFOS + PFOA resulted in a larval LC 50 of 3.10 (2.62–3.79) mg/L, suggesting an antagonistic effect. These observations were supported by significant reductions in malondialdehyde (105% ± 3.25) and increases in reduced glutathione concentrations (43.8% ± 1.78) in PFOS + PFOA exposures compared to PFOS-only treatments, indicating reduced oxidative stress. While PFOA reduced PFOS-induced mortality (97.0% ± 3.03), perfluorohexanoic acid (PFHxA) and perfluorobutanoic acid (PFBA) did not. PFOS alone did not affect expression of peroxisome proliferator-activated receptor alpha (pparα) but significantly upregulated apolipoprotein A4 (apoa4) (112.4% ± 17.8), a downstream product of pparα, while none of the other individually tested PFAS affected apoa4 expression. These findings suggest that there are antagonistic interactions between PFOA and PFOS that may reduce mixture toxicity in larval sheepshead minnows through reduced oxidative stress. Elucidating mechanisms of toxicity and interactions between PFAS will aid environmental regulation and management of these ubiquitous pollutants.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1970

Spectral reflectance characteristics and automated data reduction techniques which identify wetland and water quality conditions in the Chesapeake Bay

Progress on research designed to test the usability of multispectral, high altitude, remotely sensed data to analyze ecological and hydrological conditions in estuarine environments is presented. Emphasis was placed on data acquired by NASA aircraft over the Patuxent River Chesapeake Bay Test Site, No. 168. Missions were conducted over the Chesapeake Bay at a high altitude flight of 18,460 m and a low altitude flight of 3070. The principle objectives of the missions were: (1) to determine feasibility of identifying source and extent of water pollution problems in Baltimore Harbor, Chesapeake Bay and major tributaries utilizing high altitude, ERTS analogous remote sensing data; (2) to determine the feasibility of mapping species composition and general ecological condition of Chesapeake Bay wetlands, utilizing high altitude, ERTS analogous data; (3) to correlate ground spectral reflectance characteristics of wetland plant species with tonal characteristics on multispectral photography; (4) to determine usefulness of high altitude thermal imagery in delinating isotherms and current patterns in the Chesapeake Bay; and (5) to investigate automated data interpretive techniques which may be usable on high altitude, ERTS analogous data.

Anderson, R. R.↗
NASA NTRS1972

Agricultural and urban pollution

The degradation produced by the introduction of agricultural and urban wastes into estuarine systems, with emphasis on the Chesapeake Bay area, is discussed. The subjects presented are: (1) effects of sediment loading and (2) organic and nutrient loading problems. The impact of high turbidity on the biological life of the bay is analyzed. The sources of nutrients which produce over-enrichment of the waters and the subsequent production of phytoplankton are examined.

Brehmer, M. L.↗
NASA NTRS1972

Engineering works and the tidal Chesapeake

The tidal tributaries of the ocean and coastal areas of the mid-Atlantic region and the ecological significance of engineering projects are discussed. The effects of engineering works on maritime environments and resources, with the Chesapeake Bay as the area of prime interest are examined. Significant engineering projects, both actual and proposed, are described. The conflict of navigational demands and maintenance of an estuarine environment for commercial and sport fishing and recreation is described. Specific applications of remote sensors for analyzing ecological conditions of the bay are included.

Hargis, W. J., Jr.↗
NASA NTRS1972

A study of temporal estaurine flow dynamics

Multispectral photography,infrared imagery, image enhancement, and oceanographic, radiometric, and meteorological data were used in the study of temporal estuarine flow dynamics, nearshore circulation, and the resulting dispersal of suspended and dissolved substances introduced from the continent. Repetitive multispectral photography, IR imagery, total radiance and irradiance, water surface temperatures, salinity, total suspended solids, visibility, current velocity, winds, dye implants, and high contrast image enhancement were used to observe and describe water mass boundaries in the nearshore zone and to attempt to establish on what repetitive scale these coastal features should be observed to better understand their behavior. Water mass variability patterns, seen naturally and with the use of dyes, along the North Carolina coast and in the Chesapeake Bay are being studied as synoptic data on the basic dynamics of circulation, flushing, and mixing in coastal waters.

Mairs, R. L.↗
NASA NTRS1972

Application of selected methods of remote sensing for detecting carbonaceous water pollution

The use of aerial photography to determine the nature and extent of water pollution from carbonaceous materials is discussed. Flights were conducted over the Galveston Bay estuarine complex. Ground truth data were developed from field sampling of the waters in a region near the Houston Ship Channel. Tests conducted in the field were those for the following physical and chemical factors: (1) ph, (2) dissolved oxygen, (3) temperature, and (4) light penetration. Laboratory analyses to determine various properties of the water are described and the types of instruments used are identified. Results of the analyses are presented as charts and graphs.

Davis, E. M.↗
NASA NTRS1973

Application of ERTS-1 data to the protection and management of New Jersey's coastal environment

The author has identified the following significant results. This catalogue was prepared as a part of the joint ERTS-1 New Jersey coastal mapping experiment. First look analysis of ERTS-1 images indicates that numerous coastal oceanographic patterns can be mapped on a sequential basis using ERTS-1 images. Analysis of imagery indicates a predominant southwesterly drift of dumped wasted in the surface waters. Initial analysis of imagery indicates that the effects of tidal flushing of New York harbor extend as far south as Long Branch, New Jersey. Analysis of imagery from 3 September, 1972, indicates a wide band of turbid water extending several miles offshore around Barnegat Inlet. First look analysis of imagery from 10 October, 1972, illustrates the increased reflectance of turbid waters within the bays, sounds, and thoroughfares behind the barrier islands in the southern New Jersey shore area. The estuarine waters emanating from both Brigantine and Absecon Inlets are very turbid relative to the waters further offshore and to the north and south. The tidal prism appears to be quite large but the movement of water once outside the inlets is not very rapid. The waters are not moving away from the coastline but rather along the coast.

Yunghans, R. S.↗