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At least 235 records · Page 13

Connecting Paleo and Modern Oceanographic Data to Understand Atlantic Meridional Overturning Circulation Over Decades to Centuries

Modeling is an important tool for understanding AMOC on all timescales. Mechanistic studies of modern AMOC variability have been hampered by a lack of consistency between free-running models and the sensitivity of AMOC to resolution and parameterization. Recent work within the framework of the phase two Coordinated Ocean- Reference Experiments (CORE-II) addresses this issue head on, looking at model differences of AMOC mean state and interannual variability. One consistent feature across the models is that AMOC mean transport is related to mixed layer depths and Labrador Sea salt content, whereas interannual variability is primarily associated with Labrador Sea temperature anomalies. This is consistent with the hypothesized importance of salt balance for AMOC variability on geological timescales. The simulated relationships between AMOC and subsurface temperature anomalies in fully coupled climate models reveal subsurface AMOC fingerprints that could be used to reconstruct historical AMOC variations at low frequency.With the lack of long-term AMOC observations, models of ocean state that assimilate observational data have been explored as a way to reconstruct AMOC, but comparisons between models indicate they are quite variable in their AMOC representations. Karspeck et al. (2015) found that historical reconstructions of AMOC in such models are sensitive to the details of the data assimilation procedure. The ocean data assimilation community continues to address these issues through improved models and methods for estimating and representing error information.Two objectives of paleoclimate modeling are 1) to provide mechanistic information for interpretation of paleoclimate observations, and 2) to test the ability of predictive models to simulate Earth's climate under different background forcing states. In a good example of the first objective, Schmittner and Lund (2015) and Menviel et al. (2014) provided key information about the proxy signals expected under freshwater disturbance of AMOC, which were used to support the paleoclimate observations made by Henry et al. (2016). In an example of the second objective, Muglia and Schmittner (2015) analyzed Third Paleoclimate Modeling Intercomparison Project (PMIP3) models of the Last Glacial Maximum (LGM) and found consistently more intense and deeper AMOC transports relative to preindustrial simulations, counter to the paleoclimate consensus of LGM conditions, indicating that some processes are not well represented in the PMIP3 models. One challenge is to find adequate paleo observations against which to test these models. PMIP is now in phase 4 (part of CMIP6), which includes experiments covering five periods in Earth's history: the last millennium, last glacial maximum, last interglacial, and the mid-Pliocene. Newly compiled paleoclimate datasets from the PAGES2k project, more transient simulations, and participation of isotope enabled models planned for CMIP6PMIP4 will enable richer paleo data-model comparisons in the near future.

Kilbourne, Hali↗

Avoidance of disruptions on KSTAR due to vertical displacement events via novel real-time stability assessment

Disruption avoidance via the DECAF approach has been achieved on KSTAR using a novel real-time vertical stability assessment and a multiactuator feedback control strategy. The development of disruption avoidance strategies with reactor-relevant reliability is an urgent activity, enabling future fusion power plants. The stability metric employed is based on a new formulation of a vertical force gradient balance metric evaluated across the poloidal cross section of the plasma, with parameters tuned using historical data. Evaluation of this metric on a validation set of 400 recent KSTAR shots indicates >82% of Vertical displacement events can be avoided via feedback control. Essential to its calculation is the two-dimensional toroidal current density distribution in the plasma. Measurement of this profile faster than fully-converged equilibrium reconstructions can deliver is found to improve forecaster performance and is achieved with a surrogate model that takes as input magnetic diagnostic measurements and outputs the current profile on a basis comprising the top principal components of historical current profiles (from past equilibrium reconstructions). This method solves the non-uniqueness problem typically faced when reconstructing current profiles directly from diagnostics, while improving computational time and accuracy. On average, profiles produced by this model reach coefficients of determination of >0.99 with respect to those from equilibrium reconstructions. The avoidance actuators employed include poloidal field coils and an electron cyclotron current drive system. The multiactuator approach, as shown in this first demonstration, allows disruption avoidance while minimizing impact to operational performance. This ability, along with its flexibility and speed, makes this new approach an attractive option for avoiding these types of disruptions in reactors.

Tobin, Matthew [Columbia Univ., New York, NY (Unit↗

An immersed interface method for the 2D vorticity-velocity Navier-Stokes equations with multiple bodies

We present an immersed interface method for the vorticity-velocity form of the 2D Navier Stokes equations that directly addresses challenges posed by nonconvex immersed bodies, multiply connected domains, and the calculation of force distributions on immersed surfaces. The immersed interface method is re-interpreted as a polynomial extrapolation of flow quantities and boundary conditions into the immersed solid bodies, reducing computational cost and enabling simulations with nonconvex bodies that could not be discretized with previous immersed interface methods. In the flow, the vorticity transport equation is discretized using a conservative finite difference scheme and explicit Runge-Kutta time integration. The velocity reconstruction problem is transformed to a scalar Poisson equation that is discretized with conservative finite differences, and solved using an FFT-accelerated iterative algorithm. The use of conservative differencing throughout leads to exact enforcement of a discrete Kelvin's theorem, allowing for simulations with multiply connected domains and outflow boundaries that have challenged other immersed interface vortex methods. We also explore novel methods for recovering time-dependent pressure distributions on immersed bodies within a vorticity-based method and present a novel control volume formulation for recovering aerodynamic moments from only the vorticity and velocity fields. The method achieves second order spatial accuracy and third order temporal accuracy, and is validated on a variety of 2D flows in internal and free-space domains.

97 MATHEMATICS AND COMPUTING↗

Demonstration of a Novel Phase-Space Painting Method in a Coupled Lattice to Mitigate Space Charge in High-Intensity Hadron Beams

Multiturn charge-exchange injection is the primary method of creating high-intensity hadron beams in circular accelerators, and phase space painting during injection enables tailoring of the accumulated phase space distribution. A technique we call eigenpainting allows injection of particles into a single mode of a coupled ring, providing full four-dimensional control of the phase space distribution. Under ideal conditions, uniform eigenpainting generates a linear-force equilibrium distribution in the transverse plane, with zero volume in four-dimensional transverse phase space, even including space charge. Here, we have implemented eigenpainting for the first time in the spallation neutron source accumulator ring. Injecting 8.8 μ⁢C of an 800 MeV beam, we obtain a final ratio of intrinsic transverse emittances of ≈2.4. We analyze the effect of space charge on the final distribution through comparison of the reconstructed phase space to particle-in-cell simulations.

Evans, Nicholas J. [Oak Ridge National Laboratory ↗

Studies on image compression and image reconstruction

During this six month period our works concentrated on three, somewhat different areas. We looked at and developed a number of error concealment schemes for use in a variety of video coding environments. This work is described in an accompanying (draft) Masters thesis. In the thesis we describe application of this techniques to the MPEG video coding scheme. We felt that the unique frame ordering approach used in the MPEG scheme would be a challenge to any error concealment/error recovery technique. We continued with our work in the vector quantization area. We have also developed a new type of vector quantizer, which we call a scan predictive vector quantization. The scan predictive VQ was tested on data processed at Goddard to approximate Landsat 7 HRMSI resolution and compared favorably with existing VQ techniques. A paper describing this work is included. The third area is concerned more with reconstruction than compression. While there is a variety of efficient lossless image compression schemes, they all have a common property that they use past data to encode future data. This is done either via taking differences, context modeling, or by building dictionaries. When encoding large images, this common property becomes a common flaw. When the user wishes to decode just a portion of the image, the requirement that the past history be available forces the decoding of a significantly larger portion of the image than desired by the user. Even with intelligent partitioning of the image dataset, the number of pixels decoded may be four times the number of pixels requested. We have developed an adaptive scanning strategy which can be used with any lossless compression scheme and which lowers the additional number of pixels to be decoded to about 7 percent of the number of pixels requested! A paper describing these results is included.

Sayood, Khalid↗

A Momentum-Based Indicator for Predicting the Peak Opening Load of Supersonic Parachutes

In this paper, a new empirical indicator for predicting the peak opening loads of supersonic parachutes is presented. The proposed indicator is proportional to twice the free-stream dynamic pressure and the projected area of the parachute, which is equivalent to estimating the opening load as a percentage of the free-stream momentum flux through the projected area at the moment of peak inflation. The form of this expression is motivated by a classical control volume analysis of the aerodynamic forces acting on a parachute during inflation, under the simplifying assumptions of quasi-static and one-dimensional flow. For parachute geometries and flight conditions typical of Mars Entry, Descent, and Landing systems, the largest contribution to the total drag is shown to be a momentum flux term that is associated with the entrainment of atmosphere within the inflating parachute volume. Using this new method, empirical constants are calculated from existing flight reconstruction data and are shown to have a smaller standard deviation than similar constants determined using the customary indicator form, which is based on the steady-state subsonic drag and proportional to the parachute reference area. These empirical constants are also compared to an analytic estimate, derived from the control volume analysis, and shown to have excellent agreement across a wide range of Mach numbers and dynamic pressures for several parachute geometries. While opening loads estimated using both methods produce similar results at low supersonic Mach numbers typical of past inflations, the proposed method predicts notably larger loads at higher Mach numbers, those above Mach 2.0, due to the omission of any Mach Efficiency Factor. Several current Mars EDL projects have adopted this new indicator.

Way, David W.↗

A Machine Learning Model for Solar Sail Shape Reconstruction Using Flight Data

Solar sail deformation leads to disturbance torques from solar radiation pressure, driving performance requirements for momentum management systems. For the Solar Cruiser technology demonstrator mission, we have developed a model leveraging neural network-based machine learning to derive sail shape characteristics. The model uses torque and attitude telemetry simulated from a reduced-order tensor model of the deformed sail mesh over a characterization sequence. The machine learning model predicts sail boom deflection with comparable accuracy to that of an onboard context camera. This model can discover sail shape with no additional mass or data downlink requirements, allowing for validation of sail force modeling assumptions using in flight data. The results from the project hold promise for the further implementation of machine learning techniques in solar sail telemetry analysis and control.

solar sail↗

A Machine Learning Model for Solar Sail Shape Reconstruction Using Flight Data

Solar sail deformation leads to disturbance torques from solar radiation pressure, driving performance requirements for momentum management systems. For the Solar Cruiser technology demonstrator mission, we have developed a model leveraging neural network-based machine learning to derive sail shape characteristics. The model uses torque and attitude telemetry simulated from a reduced-order tensor model of the deformed sail mesh over a characterization sequence. The machine learning model predicts sail boom deflection with comparable accuracy to that of an onboard context camera. This model can discover sail shape with no additional mass or data downlink requirements, allowing for validation of sail force modeling assumptions using in flight data. The results from the project hold promise for the further implementation of machine learning techniques in solar sail telemetry analysis and control.

solar sail↗

Identification of nonlinear system parameters in joints using the force-state mapping technique

A procedure is presented for identifying the potentially strong nonlinear properties of structural members, such as joints, by expressing the force transmitted by the member as a function of its mechanical state. By explicitly including position and rate dependent effects, the surface of transmitted force versus state, the force-state map, has distinct, unique, superposable features for common structural nonlinearities, even those which appear to indicate hysteresis on a force-stroke presentation. An analysis is performed on the influence of true memory effects, transient response, and uncertainty in the measurements and system mass on the precision of the procedure. The successful identification of simulated data verifies the accuracy of the identification algorithm. Tests are then conducted on three actual joint models, with incomplete state measurements typical of an actual testing environment. The ability of the procedure to estimate the complete state vector and to analyze and reconstruct the measured nonlinear characteristics is demonstrated.

Crawley, E. F.↗

Retreat and Regrowth of the Greenland Ice Sheet During the Last Interglacial as Simulated by the CESM2‐CISM2 Coupled Climate–Ice Sheet Model

Abstract During the Last Interglacial, approximately 129 to 116 ka (thousand years ago), the Arctic summer climate was warmer than the present, and the Greenland Ice Sheet retreated to a smaller extent than its current state. Previous model‐derived and geological reconstruction estimates of the sea‐level contribution of the Greenland Ice Sheet during the Last Interglacial vary widely. Here, we conduct a transient climate simulation from 127 to 119 ka using the Community Earth System Model (CESM2), which includes a dynamic ice sheet component (the Community Ice Sheet Model, CISM2) that is interactively coupled to the atmosphere, land, ocean, and sea ice components. Vegetation distribution is updated every 500 years based on biomes simulated using a monthly climatology to force the BIOME4 equilibrium vegetation model. Results show a substantial retreat of the Greenland Ice Sheet, reaching a minimum extent at 121.9 ka, equivalent to a 3.0 m rise in sea level relative to the present day, followed by gradual regrowth. In contrast, a companion simulation employing static vegetation based on pre‐industrial conditions shows a much smaller ice‐sheet retreat, highlighting the importance of the changes in high‐latitude vegetation distribution for amplifying the ice‐sheet response.

54 ENVIRONMENTAL SCIENCES↗

In Vivo Thermodynamic Analysis of Glycolysis in Clostridium thermocellum and Thermoanaerobacterium saccharolyticum Using 13 C and 2 H Tracers

Clostridium thermocellum and Thermoanaerobacterium saccharolyticum are thermophilic anaerobic bacteria with complementary metabolic capabilities that utilize distinct glycolytic pathways for the conversion of cellulosic sugars to biofuels. We integrated quantitative metabolomics with 2 H and 13 C metabolic flux analysis to investigate the in vivo reversibility and thermodynamics of the central metabolic networks of these two microbes. We found that the glycolytic pathway in C. thermocellum operates remarkably close to thermodynamic equilibrium, with an overall drop in Gibbs free energy 5-fold lower than that of T. saccharolyticum or anaerobically grown Escherichia coli . The limited thermodynamic driving force of glycolysis in C. thermocellum could be attributed in large part to the small free energy of the phosphofructokinase reaction producing fructose bisphosphate. The ethanol fermentation pathway was also substantially more reversible in C. thermocellummthan in T. saccharolyticum. These observations help explain the comparatively low ethanol titers of C. thermocellum and suggest engineering interventions that can be used to increase its ethanol productivity and glycolytic rate. In addition to thermodynamic analysis, we used our isotope tracer data to reconstruct the T. saccharolyticum central metabolic network, revealing exclusive use of the Embden-Meyerhof-Parnas (EMP) pathway for glycolysis, a bifurcated tricarboxylic acid (TCA) cycle, and a sedoheptulose bisphosphate bypass active within the pentose phosphate pathway. Thermodynamics constitutes a key determinant of flux and enzyme efficiency in metabolic networks. Here, we provide new insights into the divergent thermodynamics of the glycolytic pathways of C. thermocellum and T. saccharolyticum, two industrially relevant thermophilic bacteria whose metabolism still is not well understood. We report that while the glycolytic pathway in T. saccharolyticum is as thermodynamically favorable as that found in model organisms, such as E. coli or Saccharomyces cerevisiae , the glycolytic pathway of C. thermocellum operates near equilibrium. The use of a near-equilibrium glycolytic pathway, with potentially increased ATP yield, by this cellulolytic microbe may represent an evolutionary adaptation to growth on cellulose, but it has the drawback of being highly susceptible to product feedback inhibition. The results of this study will facilitate future engineering of high-performance strains capable of transforming cellulosic biomass to biofuels at high yields and titers.

59 BASIC BIOLOGICAL SCIENCES↗

DSS 43 antenna gain analysis for Voyager Uranus encounter: 8.45-GHz radio science data correction

A malfunction of the Deep Space Network (DSN) 64-meter antenna in Australia forced the antenna to operate with a mispositioned subreflector during the Voyager Uranus encounter period (January 24, 1986). Because of changing main reflector shape and quadripod position as a function of elevation angle, the antenna gain and pointing were not as expected, and the 8.45 GHz received signal level changed during the pass. The study described here used the Geometrical Theory of Diffraction (GTD) analysis to determine actual antenna gain and pointing during that period in an attempt to reconstruct the radio science data. It is found that the 1.4 dB of signal variation can be accounted for by antenna geometry changes and pointing error. Suggested modifications to the values measured during the pass are presented. Additionally, an extremely useful tool for the analysis of gravity deformed reflectors was developed for use in future antenna design and analysis projects.

Slobin, S. D.↗

Microcomputer based software for biodynamic simulation

This paper presents a description of a microcomputer based software package, called DYNAMAN, which has been developed to allow an analyst to simulate the dynamics of a system consisting of a number of mass segments linked by joints. One primary application is in predicting the motion of a human occupant in a vehicle under the influence of a variety of external forces, specially those generated during a crash event. Extensive use of a graphical user interface has been made to aid the user in setting up the input data for the simulation and in viewing the results from the simulation. Among its many applications, it has been successfully used in the prototype design of a moving seat that aids in occupant protection during a crash, by aircraft designers in evaluating occupant injury in airplane crashes, and by users in accident reconstruction for reconstructing the motion of the occupant and correlating the impacts with observed injuries.

Rangarajan, N.↗

Hydrodynamic instabilities and heat transfer characteristics in the duct flow of a fluid in the supercritical thermodynamic regime

The behavior of fluids at supercritical thermodynamic conditions is inherently complex due to large variations in thermodynamic and transport properties. Recent numerical and experimental investigations illustrate ongoing interest for these fluids, especially supercritical CO 2 and supercritical water, for a variety of applications. For example, supercritical water reactors (SCWR) operate in this extreme condition of high-pressure and temperature, resulting in highly dynamic flow fields and unexpected heat transfer regimes. The potential heat transfer benefits in this regime are directly associated with the extreme variations in thermodynamic and transport properties, which occur at, and above, the critical point. This work characterizes the hydrodynamic instabilities that arise for fluids at supercritical thermodynamic conditions when buoyancy forces are significant. Two specific configurations are considered, a natural convection cavity flow, and a mixed convection, heated, horizontal channel flow. Natural convection flow in a cavity is a classical configuration with expected behavior below the critical point. This configuration aids in characterizing the effect of the variable properties in the supercritical thermodynamic regime. Further, limited studies in the existing literature have been conducted for low-Reynolds and intermediate-Rayleigh numbers, mixed-convection channel flows for supercritical water, which is the focus of the channel flow configuration. To investigate the thermally driven hydrodynamic instabilities in this regime, a high-order fully-implicit numerical method is used. Such strong variations in thermophysical properties (in particular, density) are difficult to simulate and an altogether compressible framework is needed. Therefore, the compressible Navier-Stokes equations are solved without any additional assumptions. The fully implicit, high-order in space and time, reconstructed discontinuous Galerkin method as implemented within the multi-physics code called ALE3D (Arbitrary Lagrangian and Eulerian in 2D and 3D), developed at Lawrence Livermore National Laboratory (LLNL), is used. This fully implicit, L-stable method accurately captures the compressible nature of the ow in the limit of very low Mach number. It has been widely accepted that above the critical point, only one phase is observed. However, recent research has indicated the existence of the distinct gas-like and liquid-like regions separated by the Widom line, the locus of the maxima of the specific heat. Along the Widom line, density decreases 6-fold, viscosity drops by a factor of 2, while specific heat spikes by an order of magnitude. These variations, specifically in density and viscosity, produce a thick pseudo-interface and flow dynamics behavior akin to film boiling. A pseudo-film at the heated wall of the cavity and the horizontal channel is observed where buoyancy forces induce mixing through the specific configurations. Further the local Rayleigh and Richardson numbers provide maps of the flow field and the buoyancy forces driving the microscopic mixing. In the first chapter, I describe a background of supercritical fluid and the various applications. The second chapter focuses on the mathematical model and numerical method used for simulations, where a description of the equation of state for supercritical water is described. The third chapter focuses on the natural convection cavity with a heated bottom wall. In this cavity a gas-like and a liquid-like flow within the supercritical thermodynamic regime are observed. The fourth chapter focuses on a forced convection, horizontal channel, distinguishing between the gas-like, liquid-like, and mixed flow regimes. Mixed convection flow, with the addition of gravitational forces in the horizontal channel show the influence of variable properties on the hydrodynamic development, heat transfer, and rising instabilities. The last chapter of this research focuses on characterizing the unstable hydrodynamics through time-averaging processes and analysis of the movement of energy through the developing plumes.

42 ENGINEERING↗

SQMS Quantum R&D in Machine Learning, Optimization and Sensing beyond Fundamental Physics Applications

This newly formed team at SQMS under the Ecosystem Thrust is looking to develop capabilities impacting societal advances outside the core domain of HEP and condensed matter physics. We explicitly leverage the experimental and algorithmic innovations developed across all groups as well as connect to broad-scope external projects of the diverse team of PIs. As the inaugural set of projects, we are studying numerically quantum machine learning models inspired by efficiently trainable echo-state and orthogonal neural networks and developing designs for related experiments to be performed on quantum processors based on SQMS SRF cQED technology and Rigetti s transmon arrays. Investigated models exploit ideas and lessons learned from multiple prior work by SQMS team members in a variety of internal and external activities [R1]. Target initial applications include noisy signal processing, potentially captured by quantum sensors or noisy QPUs, as well as simulation and classification of healthcare data. For instance, image reconstruction of the brain s electrical properties by solving the inverse Maxwell equation problem with uncertainty [R2] through a hybrid quantum-classical physics-informed architecture for time-dependent processes [R3]. The group is also investigating the application and development of novel quantum sensors based on magnetic levitation of a superconducting sphere coupled to a superconducting qubit. This coupling enables high-precision measurements of the position of the sphere, which can be used for sensitive detection of forces, enabling practical applications such as gravimetry for geophysics analysis, or accelerometry for GPS-denied navigation [R4] [R1] Rieffel, Eleanor G., Ata Akbari Asanjan, M. Sohaib Alam, Namit Anand, David E. Bernal Neira, Sophie Block, Lucas T. Brady et al. "Assessing and advancing the potential of quantum computing: A NASA case study." Future Generation Computer Systems (2024). [R2] Yu, X., Serrall s, J.E., Giannakopoulos, I.I., Liu, Z., Daniel, L., Lattanzi, R. and Zhang, Z., 2023. Pifon-ept: Mr-based electrical property tomography using physics-informed fourier networks. IEEE Journal on Multiscale and Multiphysics Computational Techniques. [R3] Wudarski, Filip, Daniel OConnor, Shaun Geaney, Ata Akbari Asanjan, Max Wilson, Elena Strbac, P. Aaron Lott, and Davide Venturelli. "Hybrid quantum-classical reservoir computing for simulating chaotic systems." arXiv preprint arXiv:2311.14105 (2023). [R4] Higgins, Gerard, Saarik Kalia, and Zhen Liu. "Maglev for dark matter: Dark-photon and axion dark matter sensing with levitated superconductors." Physical Review D 109.5 (2024): 055024.

Venturelli, Davide↗

Galactic bridges and tails.

This paper argues that the bridges and tails seen in some multiple galaxies are just tidal relics of close encounters. These consequences of the brief but violent tidal forces are here studied in a deliberately simple-minded fashion. Each encounter is considered to involve only two galaxies and to be roughly parabolic; each galaxy is idealized as just a disk of noninteracting test particles which initially orbit a central mass point. As shown here, the two-sided distortions provoked by gravity alone in such circumstances can indeed evolve kinematically into some remarkably narrow and elongated features. Besides extensive pictorial survey of tidal damage, this paper offers reconstructions of the orbits and outer shapes of four specific interacting pairs: Arp 295, M51 + NGC 5195, NGC 4676, and NGC 4038/9.

Toomre, A.↗

Coupled Modes of North Atlantic Ocean Atmosphere Variability and the Onset of the Little Ice Age

Hydroclimate extremes in North America, Europe, and the Mediterranean are linked to ocean and atmospheric circulation anomalies in the Atlantic, but the limited length of the instrumental record prevents complete identification and characterization of these patterns of covariability especially at decadal to centennial timescales. Here we analyze the coupled patterns of drought variability on either side of the North Atlantic Ocean basin using independent climate field reconstructions spanning the last millennium in order to detect and attribute epochs of coherent basin-wide moisture anomalies to ocean and atmosphere processes. A leading mode of broad-scale moisture variability is characterized by distinct patterns of North Atlantic atmosphere circulation and sea surface temperatures. We infer a negative phase of the North Atlantic Oscillation and colder Atlantic sea surface temperatures in the middle of the 15th century, coincident with weaker solar irradiance and prior to strong volcanic forcing associated with the early Little Ice Age.

Kevin J Anchukaitis↗

Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past

Abstract Although the phylum Chloroflexota is ubiquitous, its biology and evolution are poorly understood due to limited cultivability. Here, we isolated two motile, thermophilic bacteria from hot spring sediments belonging to the genus Tepidiforma and class Dehalococcoidia within the phylum Chloroflexota. A combination of cryo-electron tomography, exometabolomics, and cultivation experiments using stable isotopes of carbon revealed three unusual traits: flagellar motility, a peptidoglycan-containing cell envelope, and heterotrophic activity on aromatics and plant-associated compounds. Outside of this genus, flagellar motility has not been observed in Chloroflexota, and peptidoglycan-containing cell envelopes have not been described in Dehalococcoidia. Although these traits are unusual among cultivated Chloroflexota and Dehalococcoidia, ancestral character state reconstructions showed flagellar motility and peptidoglycan-containing cell envelopes were ancestral within the Dehalococcoidia, and subsequently lost prior to a major adaptive radiation of Dehalococcoidia into marine environments. However, despite the predominantly vertical evolutionary histories of flagellar motility and peptidoglycan biosynthesis, the evolution of enzymes for degradation of aromatics and plant-associated compounds was predominantly horizontal and complex. Together, the presence of these unusual traits in Dehalococcoidia and their evolutionary histories raise new questions about the timing and selective forces driving their successful niche expansion into global oceans.

59 BASIC BIOLOGICAL SCIENCES↗