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At least 235 records · Page 13

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DOE OSTI2021

Joint impedance and facies inversion of time-lapse seismic data for improving monitoring of CO 2 incidentally stored from CO 2 EOR

Time-lapse seismic monitoring is an effective and proven technology for mapping the distribution of CO 2 in a subsurface reservoir. When injected CO 2 displaces other reservoir fluids, porous-medium properties are changed and thus the seismic impedance changes, causing time-lapse seismic amplitude differences in the injection zones. The analysis and interpretation of images created from these amplitude differences can provide information about reservoir architecture and the CO 2 migration within the reservoir. Incorporating seismic inversion and rock physics into the interpretation of time-lapse seismic data can considerably improve the modeling and monitoring to detect and assess the location of CO 2 over time. The joint inversion method presented in this paper has an integral representation of the geology in the inversion algorithm using elastic facies, which provides information about the spatial distribution of the geologic heterogeneities controlling the movement of fluids in the reservoir. The method was successfully applied to time-lapse seismic data from a mature oil field undergoing CO 2 enhanced oil recovery. The estimated seismic acoustic impedances and facies reflect the characteristics of individual geologic facies and fluid conditions of the reservoir subject to CO 2 injection. Finally, the probabilities estimated by the joint impedance and facies inversion for the reservoir's litho-fluid facies can be used for forecasting CO 2 saturation and pressure changes within the target reservoir.

4D seismic↗

DOE OSTI2025

Benders Decomposition Using Graph Modeling and Multi-Parametric Programming

Benders decomposition is a widely used method for solving large and structured optimization problems, but its performance is affected by the repeated solution of subproblems. We propose a flexible and modular algorithmic framework for accelerating Benders decomposition. Specifically, we express the problem structure by using a graph-theoretic modeling abstraction in which nodes represent optimization subproblems and edges represent connectivity between subproblems. A key innovation of our approach is that we embed multiparametric programming (mp) surrogates for node subproblems, which maps the exact analytical map of the subproblem solution space. The use of mp surrogates allows us to replace subproblem solves with fast look-ups and function evaluations for primal and dual variables during the iterative Benders process. We formally show the equivalence between classical Benders cuts and those derived from the mp solution. We implement our framework in the open-source PlasmoBenders.jl software package. To demonstrate the capabilities of the proposed framework, we apply it to a two-stage stochastic programming problem, which aims to make optimal capacity expansion decisions under market uncertainty. We evaluate both single-cut and multicut variants of Benders decomposition and show that the use of mp surrogates achieves substantial speedups in subproblem solve time, while preserving the convergence guarantees of Benders decomposition. We highlight advantages in solution analysis and interpretability that is enabled by mp critical region tracking; specifically, we show that these reveal how decisions evolve geometrically across the Benders search. Our results aim to demonstrate that combining surrogate modeling with graph modeling offers a promising and extensible foundation for structure-exploiting decomposition. In addition, by decomposing the problem into more tractable subproblems, the proposed approach also aims to overcome scalability issues of mp. Finally, the use of mp surrogates provides a unifying and modular optimization framework that enables the representation of heterogeneous node subproblems as modeling objects with a homogeneous structure.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

Open-Source and FAIR Research Software for Proteomics

Scientific discovery relies on innovative software as much as experimental methods, especially in proteomics, where computational tools are essential for mass spectrometer setup, data analysis, and interpretation. Since the introduction of SEQUEST, proteomics software has grown into a complex ecosystem of algorithms, predictive models, and workflows, but the field faces challenges, including the increasing complexity of mass spectrometry data, limited reproducibility due to proprietary software, and difficulties integrating with other omics disciplines. Closed-source, platform-specific tools exacerbate these issues by restricting innovation, creating inefficiencies, and imposing hidden costs on the community. Open-source software (OSS), aligned with the FAIR Principles (Findable, Accessible, Interoperable, Reusable), offers a solution by promoting transparency, reproducibility, and community-driven development, which fosters collaboration and continuous improvement. In this manuscript, we explore the role of OSS in computational proteomics, its alignment with FAIR principles, and its potential to address challenges related to licensing, distribution, and standardization. Drawing on lessons from other omics fields, we present a vision for a future where OSS and FAIR principles underpin a transparent, accessible, and innovative proteomics community.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

Choice of 16S ribosomal RNA primers affects the microbiome analysis in chicken ceca

We evaluated the effect of applying different sets of 16S rRNA primers on bacterial composition, diversity, and predicted function in chicken ceca. Cecal contents from Ross 708 birds at 1, 3, and 5 weeks of age were collected for DNA isolation. Eight different primer pairs targeting different variable regions of the 16S rRNA gene were employed. DNA sequences were analyzed using open-source platform QIIME2 and the Greengenes database. PICRUSt2 was used to determine the predicted function of bacterial communities. Changes in bacterial relative abundance due to 16S primers were determined by GLMs. The average PCR amplicon size ranged from 315 bp (V3) to 769 bp (V4–V6). Alpha- and beta-diversity, taxonomic composition, and predicted functions were significantly affected by the primer choice. Beta diversity analysis based on Unweighted UniFrac distance matrix showed separation of microbiota with four different clusters of bacterial communities. Based on the alpha- and beta-diversity and taxonomic composition, variable regions V1–V3(1) and (2), and V3–V4 and V3–V5 were in most consensus. Our data strongly suggest that selection of particular sets of the 16S rRNA primers can impact microbiota analysis and interpretation of results in chicken as was shown previously for humans and other animal species.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

The Sagittarius stream in Gaia Early Data Release 3 and the origin of the bifurcations

The Sagittarius dwarf spheroidal (Sgr) is a dissolving galaxy being tidally disrupted by the Milky Way (MW). Its stellar stream still poses serious modelling challenges, which hinders our ability to use it effectively as a prospective probe of the MW gravitational potential at large radii. Our goal is to construct the largest and most stringent sample of stars in the stream with which we can advance our understanding of the Sgr-MW interaction, focusing on the characterization of the bifurcations. We improved on previous methods based on the use of the wavelet transform to systematically search for the kinematic signature of the Sgr stream throughout the whole sky in the Gaia data. We then refined our selection via the use of a clustering algorithm on the statistical properties of the colour-magnitude diagrams. Our final sample contains more than 700 000 candidate stars and is three times larger than previous Gaia samples. With it, we have been able to detect the bifurcation of the stream in both the northern and southern hemispheres, which requires four branches (two bright and two faint) to fully describe the system. We present the detailed proper motion distribution of the trailing arm as a function of the angular coordinate along the stream, showing, for the first time, the presence of a sharp edge (on the side of the small proper motions) beyond which there are no Sgr stars. We also characterize the correlation between kinematics and distance. Finally, the chemical analysis of our sample shows that the faint branch of the bifurcation is more metal poor than the bright. We provide analytical descriptions for the proper motion trends as well as for the sky distribution of the four branches of the stream. Based on our analysis, we interpret the bifurcations as a misaligned overlap of the material stripped at the antepenultimate pericentre (faint branches) with the stars ejected at the penultimate pericentre (bright branch), given that Sgr just went through its perigalacticon. The source of this misalignment is still unknown, but we argue that models with some internal rotation in the progenitor – at least during the time of stripping of the stars that are now in the faint branches – are worth exploring.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Overview of recent turbulence studies across multiple confinement modes at the ASDEX Upgrade tokamak using the Correlation Electron Cyclotron Emission diagnostic

This work presents an overview of recent and ongoing experimental measurements of core and edge turbulence across multiple confinement regimes using the Correlation Electron Cyclotron Emission (CECE) diagnostic at the ASDEX Upgrade (AUG) tokamak. A common goal among these investigations is to identify how the properties of the turbulent electron temperature fluctuations measured by CECE influence and regulate the unique transport characteristics of each confinement regime, including L-mode, I-mode, ELMy H-mode, and ELM-free H-mode. Optics and signal processing methods to aid in the analysis and interpretation of experimental turbulence results are also presented. These methods, and particularly the down-sampling and ensemble averaging method, are relevant to a wide variety of fusion and non-fusion applications.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

Velocity-space signatures of shock-drift acceleration at quasi-perpendicular collisionless shocks

The shock-drift acceleration of ions at quasi-perpendicular shocks is a well-known kinetic mechanism for the acceleration of a small fraction of incoming ions to high energy. Here, we use a suite of sixteen hybrid simulations of quasi-perpendicular collisionless shocks over the range of Alfvén Mach number 4.3 ≤ M A ≤ 15.8 (corresponding to a range of fast magnetosonic Mach numbers 2.6 ≤ M f ≤ 9.4) and shock-normal angle 45°≤ θ Bn ≤ 90° to identify the velocity-space signature of shock-drift acceleration using the field-particle correlation technique. We show that the features of the ion velocity distribution in the shock foot and ramp regions can be clearly interpreted by analysis of the single-particle trajectory of a reflected ion through the full 3D-3V phase space. The characteristic features of the velocity-space signature of shock-drift acceleration remain qualitatively robust over the full parameter range of our simulations, providing a potential means for its identification using single-point spacecraft measurements. At higher Alfvén Mach numbers M A ≳8 (M f ≳5), kinetic instabilities generate fluctuations of the electromagnetic fields within the shock transition region, leading to fluctuations in and smearing out of the resulting velocity-space signatures, but the signature remains generally robust and identifiable. The results on the shock-drift acceleration of ions presented here represent a novel means to determine more completely the partitioning of upstream bulk flow kinetic energy into plasma heating, particle acceleration, and electromagnetic fields in collisionless shocks.

Howes, Gregory G. [Univ. of Iowa, Iowa City, IA (U↗

DOE OSTI2026

Morphological descriptors of nanoparticles: The link between atomistic structures and x-ray absorption spectra

Understanding and quantifying the morphology of nanoparticles are essential for linking their atomic structure to diverse applications and verifying theoretical models. While experimental information on the structure of nanoparticles in the size range below ∼5 nm can be extracted from x-ray absorption spectroscopy using a small number of descriptors—most commonly coordination numbers—developing an understanding of morphology descriptors from experimental data remains a challenge. Here, in this study, we introduce NanoGene, a genetic algorithm-based method for generating structurally diverse nanoparticle models guided by user-defined descriptors. We establish correlations among structural, size-related, and morphological descriptors and demonstrate how experimentally accessible parameters, such as coordination numbers, can be leveraged to infer otherwise inaccessible ones, such as the generalized coordination number or particle oblateness. Principal component and clustering analyses reveal the relative importance of descriptors, with the number of atoms emerging as a key discriminant of the nanoparticle structure. By providing both the methodology and an extensive dataset of nanoparticle geometries, this work offers a practical foundation for descriptor-based analysis and interpretation of experimental observations, bridging the gap between local atomic coordinates and global morphological characterization.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

DOE OSTI2022

Nonnuclear Experimental Capabilities to Support Design, Development, and Demonstration of Microreactors

This work provides a summary of selected experimental capabilities being developed to support nonnuclear testing and demonstration of technology in support of microreactors under the U.S. Department of Energy’s (DOE’s) Microreactor Program. Major capabilities include the Single Primary Heat Extraction and Removal Emulator (SPHERE) and the Microreactor Agile Non-nuclear Experimental Test Bed (MAGNET). The SPHERE facility allows for controlled testing of the steady-state and transient heat rejection capabilities of a single heat pipe using electrical heaters that simulate nuclear heating. The facility is capable of monitoring axial temperature profiles along the heat pipe and surrounding test articles during startup, steady-state operation, and transients. Instrumentation includes noncontact infrared thermal imaging, surface thermocouples, spatially distributed fiber optic temperature and strain sensors, electrical power meters, and a water-cooled, gas-gap calorimeter for quantifying heat rejection from the heat pipe. The facility can be operated under both vacuum and inert-gas conditions. The MAGNET facility is a large-scale, 250-kW electrically heated microreactor test bed to enable nonnuclear experimental evaluation of a variety of microreactor concepts. It can be supplied to electrically heat a scaled section of a microreactor and further test the capabilities of heat rejection systems. The initial MAGNET experiments will support technology maturation and reduce uncertainty and risk associated with the design, operation, and deployment of monolithic heat pipe–based reactors. However, this test bed can broadly be applied to multiple microreactor concepts to evaluate a wide range of thermal-hydraulic and structural phenomena such as interface coupling with power conversion units and other collocated systems. MAGNET can evaluate integral thermomechanical effects during electrical heating of an array of heat pipes in a larger test article. Examples of initial testing will include thermal stresses in the monolith and the impact of debonding of a heat pipe from the core block and how that failure could impact surrounding heat pipes, i.e., understanding the potential for cascading failure. This work also discusses some modeling capabilities that can support experiment design, analysis, and interpretation, including the heat pipe code Sockeye and a comparison of thermal-structural simulations performed using ABAQUS and STAR-CCM+.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2025

Azimuthal correlation anisotropies in p + p collisions simulated using Pythia

Stimulated by a keen interest in possible collective behavior in high-energy proton-proton and proton-nucleus collisions, we study two-particle angular correlations in pseudorapidity and azimuthal differences in simulated p + p interactions using the Pythia 8 event generator. Multi-parton interactions and color connection are included in these simulations, which have been perceived to produce collectivity in final-state particles. Meanwhile, contributions from genuine few-body nonflow correlations, not of collective flow behavior, are known to be severe in these small-system collisions. We present our Pythia correlation studies pedagogically and report azimuthal harmonic anisotropies analyzed using several methods. We observe anisotropies in these Pythia simulated events qualitatively and semi-quantitatively, similar to experimental data. Furthermore, our findings highlight the delicate nature of azimuthal anisotropies in small-system collisions and provide a benchmark that can aid in improving data analysis and interpreting experimental measurements in small-system collisions.

Pythia↗

DOE OSTI2026

Overview of ST40 results and future: expanding the physics basis of high-field spherical tokamaks

The goal of the ST40 programme is to explore the physics of high-field spherical tokamaks (STs), to validate empirical and theoretical models and, hence, to build confidence in predictions required to support the design of future generations of STs. ST40 is a compact high-field ST that has achieved the following parameters: R 0 = 0.4–0.55 m, I p = 0.20–0.85 MA, B t (R= 0.4 m) = 0.7–2.1 T, κ ⩽ 1.9, and A = 1.6–1.9. Highlights of recent experimental results include (i) H-mode and confinement studies at B t ⩽ 2.1 T, (ii) observation of bifurcation of the scrape-off-layer power fall-off width, λ q , into a ‘wide’ branch that follows existing H-mode scalings and a ‘narrow’ branch that exhibits λ q values that are up to 10 times lower than the predictions of established scalings, (iii) development of high-performance scenarios with plasma current, I p , up to 0.85 MA, (iv) development of highly non-inductive scenarios with high β p , and (v) the first ST40 experiments utilising the newly commissioned impurity powder dropper. The work on all these topics has been supported by a number of advancements in ST40 hardware and software, from plasma control to data analysis and interpretation. At the end of 2025, ST40 embarked on a major upgrade to further expand its capabilities by introducing, among other improvements, all-metal plasma-facing components, 1 MW of electron cyclotron heating, a pellet injector, and a pair of lithium evaporators for wall conditioning.

confinement↗

DOE OSTI2022

Bending as a control knob for the electronic and optical properties of phosphorene nanoribbons

We have assessed mechanical bending as a powerful controlling tool for the electronic structure and optical properties of phosphorene nanoribbons. We use state-of-the-art density functional approximations in our work. The overall performance of the recently developed meta-generalized gradient approximation (meta-GGA) mTASK [Phys. Rev. Materials 5, 063803 (2021)] functional establishes the method as a useful alternative to the screened hybrid HSE06 for better band gaps of phosphorene nanoribbons. We present a detailed analysis to interpret the optical absorption of bent phosphorene nanoribbons using the GW-Bethe-Salpeter approximation. Finally, we demonstrate the important role of the unoccupied in-gap state and conclude that this in-gap state in armchair nanoribbons introduced by bending can significantly affect the properties of low-energy excitons and add some useful opportunities for applications in optoelectronic devices.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Sheaves as a Framework for Understanding and Interpreting Model Fit

As data grows in size and complexity, finding frameworks which aid in interpretation and analysis has become critical. This is particularly true when data comes from complex systems where extensive structure is available, but must be drawn from peripheral sources. In this paper we argue that in such situations, sheaves can provide a natural framework to analyze how well a statistical model fits at the local level (that is, on subsets of related datapoints) vs the global level (on all the data). The sheaf-based approach that we propose is suitably general enough to be useful in a range of applications, from analyzing sensor networks to understanding the feature space of a deep learning model.

Kvinge, Henry J.↗

DOE OSTI2024

Explaining Neural Spike Activity for Simulated Bio-plausible Network through Deep Sequence Learning

With significant improvements in large-scale simulations of brain models, there is a growing need to develop tools for rapid analysis and interpreting the simulation results. In this work, we explore the potential of sequential deep learning models to understand and explain the network dynamics among the neurons extracted from a large-scale neural simulation in STACS (Simulation Tool for Asynchronous Cortical Stream). Our method employs a representative neuroscience model that abstracts the cortical dynamics with a reservoir of randomly connected spiking neurons with a low stable spike firing rate throughout the simulation duration. We subsequently analyze the spike dynamics of the simulated spiking neural network through an autoencoder model and an attention-based mechanism.

Kulkarni, Shruti↗

DOE OSTI2020

Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

The extensive heterogeneity of biological data poses challenges to analysis and interpretation. Construction of a large-scale mechanistic model of Escherichia coli enabled us to integrate and cross-evaluate a massive, heterogeneous dataset based on measurements reported by various groups over decades. We identified inconsistencies with functional consequences across the data, including that the total output of the ribosomes and RNA polymerases described by data are not sufficient for a cell to reproduce measured doubling times, that measured metabolic parameters are neither fully compatible with each other nor with overall growth, and that essential proteins are absent during the cell cycle—and the cell is robust to this absence. Finally, considering these data as a whole leads to successful predictions of new experimental outcomes, in this case protein half-lives.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Three-dimensional cooperative inversion of airborne magnetic and gravity gradient data using deep-learning techniques

Using multiple geophysical methods has become a prevailing approach in numerous geophysical applications to investigate subsurface structures and parameters. These multimethod-based exploration strategies have the potential to greatly diminish uncertainties and ambiguities encountered during geophysical data analysis and interpretation. One of the applications is the cooperative inversion of airborne magnetic and gravity gradient data for the interpretation of data obtained in mineral, oil and gas, and geothermal explorations. In this paper, a unified cooperative inversion framework is designed by combining the standard separate inversions with a deep neural network (DNN), which serves as the link between different types of data. A well-trained DNN takes the separately inverted susceptibility and density models as the inputs and provides improved models that will be used as the initial models of deterministic inversions. A two-round iteration strategy is adopted to guarantee the reasonability of the recovered models and overall efficiency of the inversion. In addition, this deep-learning (DL)-based framework demonstrates excellent generalization abilities when tested on models that are entirely distinct from the training data sets. The framework can easily incorporate multiphysics without necessitating any structural changes to the network. Synthetic experiments validate that our DL-based method outperforms conventional separate inversions and cross-gradient-based joint inversion in view of the accuracy of the recovered models and inversion efficiency. Successful application to field data further verifies the effectiveness of our DL-based method.

Geochemistry & Geophysics↗

DOE OSTI2021

Analysis and Integration of the Hydraulic Fracturing Test Site-2 (HFTS-2) Comprehensive Dataset

Hydraulic Fracturing Test Site-2 (HFTS-2) is a field-based research experiment performed in the Permian (Delaware) Basin. The unique aspect of this program was the acquisition of a unique, comprehensive, diagnostic dataset. Additionally, shorter parent wells drilled three years before the child wells offered clear distinction between the stages influenced by parent-child effects and the stages without any effects. The goal of this study was to analyze and integrate this comprehensive diagnostic dataset to understand the areal and vertical extent of hydraulic fractures (HF). The paper also provides insights on the effects of parent wells’ depletion on child well HF geometry based on various monitoring methods and subsurface models. Areal and vertical coverage for all HFTS-2 wells during stimulation and depletion was estimated based on analysis and interpretation of diagnostics and advanced modeling results. HFTS-2 diagnostics included microseismic (MS), pre- and post-stimulation logs and cores, bottomhole gauges, and fiber optic (FO) data. The diagnostics results (MS, FO, image logs) were integrated and used to calibrate subsurface models. Additional field tests were designed and implemented for depletion monitoring. The tailored program for monitoring depletion included vertical and slant well pressures, interference testing, and a vertical strain depletion trial. Areal Coverage: Conventional MS (and FO MS) were used to compute HF dimensions, which were compared with diagnostics (FO strain, gauge, image logs) observations and calibrated subsurface models. A post-production interference test did not show offset well communication. Vertical Coverage: Vertical coverage during stimulation was monitored using a vertical monitoring well. The stronger mechanical strain signals showed good correlation with MS event intensities, geomechanical properties, and gauge inferences. Vertical depletion was estimated based on vertical/slant well gauges and strain depletion tests. Parent-Child Effects: Diagnostics and calibrated subsurface models show asymmetry in child well fracture geometries for stages that overlap parent wells. Child well image logs serve as a good indicator for parent Downloaded from http://onepetro.org/URTECONF/proceedings-pdf/21URTC/2-21URTC/D021S031R004/2477423/urtec-2021-5241-ms.pdf/1 by Carol Worster on 28 February 2022 URTeC 5241 well HF tracking. Child well MS events had an eastward bias, in line with pre-stimulation image logs, and was confirmed by parent well frac hits. Novel/Additive Information: The dataset presents a unique, over-constrained problem space to compare independent techniques to arrive at HF metrics (i.e., stimulation height and/or half-length), unlike a single source dataset, in which calibration is done using available data to guide predictions. Here, the asymmetry in HF geometry seen in the stages influenced by parent-child effects offers unique insights into well spacing and landing, which are key capital decisions the unconventional resources industry is seeking to optimize.

58 GEOSCIENCES↗

DOE OSTI2021

HFTS-2 Completions Design and State-of-the-Art Diagnostics Results

Various completion schemes were tested as part of the Hydraulic Fracture Test Site-2 (HFTS-2) project. The wells were instrumented with permanent fiber optic (FO) cable, and unique near-wellbore and far-field region surveys were acquired to evaluate spatial and temporal hydraulic fracture characteristics. The state-of-the-art diagnostics included substantial monitoring of both the well stimulation and longer-term production performance. The objective was to evaluate and improve stimulation distribution effectiveness (SDE) for different completion designs based on the diagnostics results. A hydraulic fracturing (HF) profile (i.e., proppant/fluid allocation among clusters) was obtained using near-wellbore Distributed Acoustic Sensing (DAS) data acquired during stimulation. Statistical analysis provided a quantitative assessment of SDE for the different completion designs. A novel workflow was developed to assess time-lapse fracture property changes at the cluster and stage levels based on Distributed Strain Sensing (DSS) data acquired during the production phase. These time-lapse fracture property changes were compared with the HF profile. Based on the statistical analysis, Rate Per Cluster (RPC) during proppant slurry placement appears to be a primary completion design variable, rather than the typical Rate Per Perf (RPP). If RPC was not maintained at a certain level, the likelihood of uneven distribution increased dramatically. The stage configurations that created low RPC while maintaining high RPP did not show improved SDE. The strain change results based on DSS data during the production phase indicated near-wellbore fracture property changes (e.g., aperture changes during well shut-in and flow periods) and aligned well with near-wellbore DAS signals acquired during stimulation. More importantly, fracture property changes based on DSS data acquired during two tests over a 7-month period show high consistency and good alignment with the near-wellbore HF profile. This workflow quantitatively evaluates SDE for different completion designs using diagnostic results and could help optimize completion strategy for future development projects. Here, the analysis and interpretation of results demonstrate the technical feasibility of using permanent fiber optic cable for stimulation and production monitoring and indic

58 GEOSCIENCES↗