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At least 235 records · Page 13

Modeling the Joint Effects of Vegetation Characteristics and Soil Properties on Ecosystem Dynamics in a Panama Tropical Forest

Abstract In tropical forests, both vegetation characteristics and soil properties are important not only for controlling energy, water, and gas exchanges directly but also determining the competition among species, successional dynamics, forest structure and composition. However, the joint effects of the two factors have received limited attention in Earth system model development. Here we use a vegetation demographic model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) implemented in the Energy Exascale Earth System Model (E3SM) Land Model (ELM), ELM‐FATES, to explore how plant traits and soil properties affect tropical forest growth and composition concurrently. A large ensemble of simulations with perturbed vegetation and soil hydrological parameters is conducted at the Barro Colorado Island, Panama. The simulations are compared against observed carbon, energy, and water fluxes. We find that soil hydrological parameters, particularly the scaling exponent of the soil retention curve ( B sw ), play crucial roles in controlling forest diversity, with higher B sw values (>7) favoring late successional species in competition, and lower B sw values (1 ∼ 7) promoting the coexistence of early and late successional plants. Considering the additional impact of soil properties resolves a systematic bias of FATES in simulating sensible/latent heat partitioning with repercussion on water budget and plant coexistence. A greater fraction of deeper tree roots can help maintain the dry‐season soil moisture and plant gas exchange. As soil properties are as important as vegetation parameters in predicting tropical forest dynamics, more efforts are needed to improve parameterizations of soil functions and belowground processes and their interactions with aboveground vegetation dynamics.

54 ENVIRONMENTAL SCIENCES↗

NGEE Arctic Field-to-Model

This repository contains workshop documentation and shell scripts/computational infrastructure for building, running, and analyzing output from the DOE Energy Exascale Earth System Model (E3SM) Land Model (ELM).

Fiorella, Rich [@lanl]↗

ELM model simulations of Plum Island Ecosystems LTER low marsh site 2018-2020

Model simulations using the Department of Energy's Energy Exascale Earth System Model (E3SM) land model (ELM) with improved capabilities to represent vegetation response to salinity and inundation. The simulations were conducted for a tidal salt marsh at Plum Island Ecosystems Long Term Ecological Research (LTER) site near Rowley, Massachusetts, USA; the site is a low marsh dominated by Spartina alterniflora. The model was forced with site-specific meteorology, salinity and tidal cycles from 2018-2020. Four sets of model simulations are included and described below:1. Parameterization of the salinity response function. These simulations tested different combinations of values for optimal salinity and salinity tolerance.2. Model evaluation. This comparison conducted simulations using the default model, the salinity function only, the submergence function only, and both the salinity and submergence functions. 3. Salinity scenarios. These simulations used the 2018 salinity input data varied by -5 to +10 ppt salinity.4. Water level scenarios. These simulations used the tide height varied by -10 to +50 cm. These simulations were used to demonstrate how the salinity and submergence functions better represent carbon uptake by tidal salt marshes.The data package includes netCDF files used as forcing files for tide height and salinity, one for each year 2018-2020 at observed salinity concentrations, and an additional three forcing files in which salinity concentrations were varied 5 ppt lower, 5 ppt higher, and 10 ppt higher than the measured 2018 time series. Also included are python scripts for creating forcing files, plain text parameter and command files for running simulations, model outputs in netCDF format, and python scripts for visualizing outputs. Code for the modified E3SM model is archived in Sulman et al 2023 at doi:10.15485/1991625. More detail about files is provided in the README.md file.

54 ENVIRONMENTAL SCIENCES↗

Effects of Rapid Permafrost Thaw on CO2 and CH4 Fluxes in a Warmer and Wetter Future (Final Technical Report)

When ice-rich permafrost thaws, the ground subsides, creating thermokarst landscapes with dramatically different soil conditions and carbon fluxes than the original ecosystem. Roughly 20% of the northern permafrost region is susceptible to thermokarst formation (Olefeldt et al., 2016). Thermokarst formation is often rapid; tens of meters of permafrost can thaw within a few years (Schuur et al., 2015). In topographically low areas, thermokarst thaw converts boreal forest or tundra dry shrub ecosystems into sedge or Sphagnum moss wetlands (Olefeldt et al., 2016). While this type of landscape transformation releases carbon stored in permafrost into the atmosphere, on longer time scales, it facilitates sequestration of atmospheric carbon in plant biomass because permafrost thaw releases plant-available nutrients and wetlands are highly productive (M. C. Jones et al., 2017). However, wetlands also generate methane, which is a potent greenhouse gas. Methane emissions from thermokarst wetlands can cause these carbon-sequestering systems to have a positive global warming potential (Johansson et al., 2006; Turetsky et al., 2007). Our project objective was to improve Earth System and environmental predictability by advancing understanding of how CO 2 and CH 4 flux in permafrost thaw-induced wetlands (thermokarst) will change in the future as temperatures and climate conditions shift. Northern latitudes are expected to get warmer and wetter (IPCC 2013), and initiation and expansion of thermokarst thaw is expected to increase (Jorgenson et al. 2006; Zhang et al. 2017). Given these expected changes, our work sought to address three broad questions: Q1) How will northern latitude CO2 and CH4 emissions respond to warming temperatures? Q2) What is the impact of precipitation on permafrost thaw and carbon emissions? Q3) How do CO2 and CH4 emissions change as wetlands age after permafrost thaw? To answer these questions, we took both a modeling and measurement approach. Modeling work was conducted with DOE’s Energy Exascale Earth System Model (E3SM) land model (ELM). Empirical work took place in two primary locations. The first was a thermokarst site near Fairbanks, AK. The site is part of the Bonanza Creek Long Term Ecological Research program and is well instrumented (Neumann et al., 2019). The second was an isolated thawing permafrost wetland located on Kenai Peninsula — Brown’s Lake bog (B. M. Jones et al., 2016) — where the current climate is representative of what is expected at higher latitudes in the future. This site provides an ideal opportunity to test our hypotheses about how thermokarst wetland dynamics will respond to future environmental conditions. In addition, the project collaborated with researchers asking similar questions who were collecting measurements in high latitude post-glacial lakes located in collaborators tackling similar questions in Sweden (Stordalen Mire) (Emerson et al., 2021). Project efforts directly aligned with the stated goal of the funding opportunity announcement (FOA), which was “to improve the understanding and representation of terrestrial ecosystems in ways that advance Earth system model parameterizations and capabilities... thereby improving the quality of Earth and environmental model projections and providing the scientific foundation needed to support DOE’s science and energy missions.” Specifically, the project improved sophistication and accuracy of the Energy Exascale Earth System Model (E3SM), which is being developed primarily at DOE National Laboratories to support scientific research and decision-making.

54 ENVIRONMENTAL SCIENCES↗

Simulated wildfire burned area over the CONUS during 2001-2020

Wildfires have shown increasing trends in both frequency and severity across the Contiguous United States (CONUS). However, process-based fire models have difficulties in accurately simulating the burned area over the CONUS due to a simplification of the physical process and cannot capture the interplay among fire, ignition, climate, and human activities. The deficiency of burned area simulation deteriorates the description of fire impact on energy balance, water budget, and carbon fluxes in the Earth System Models (ESMs). Alternatively, machine learning (ML) based fire models, which capture statistical relationships between the burned area and environmental factors, have shown promising burned area predictions and corresponding fire impact simulation. We develop a hybrid framework (ML4Fire-XGB) that integrates a pretrained eXtreme Gradient Boosting (XGBoost) wildfire model with the Energy Exascale Earth System Model (E3SM) land model (ELM). A Fortran-C-Python deep learning bridge is adapted to support online communication between ELM and the ML fire model. Specifically, the burned area predicted by the ML-based wildfire model is directly passed to ELM to adjust the carbon pool and vegetation dynamics after disturbance, which are then used as predictors in the ML-based fire model in the next time step. Evaluated against the historical burned area from Global Fire Emissions Database 5 from 2001-2020, the ML4Fire-XGB model outperforms process-based fire models in terms of spatial distribution and seasonal variations. Sensitivity analysis confirms that the ML4Fire-XGB well captures the responses of the burned area to rising temperatures. The ML4Fire-XGB model has proved to be a new tool for studying vegetation-fire interactions, and more importantly, enables seamless exploration of climate-fire feedback, working as an active component in E3SM.

Liu, Ye↗

Landsat near-infrared (NIR) band and ELM-FATES sensitivity to forest disturbances and regrowth in the Central Amazon

Forest disturbance and regrowth are key processes in forest dynamics, but detailed information on these processes is difficult to obtain in remote forests such as the Amazon. We used chronosequences of Landsat satellite imagery (Landsat 5 Thematic Mapper and Landsat 7 Enhanced Thematic Mapper Plus) to determine the sensitivity of surface reflectance from all spectral bands to windthrow, clear-cut, and clear-cut and burned (cut + burn) and their successional pathways of forest regrowth in the Central Amazon. We also assessed whether the forest demography model Functionally Assembled Terrestrial Ecosystem Simulator (FATES) implemented in the Energy Exascale Earth System Model (E3SM) Land Model (ELM), ELM-FATES, accurately represents the changes for windthrow and clear-cut. The results show that all spectral bands from the Landsat satellites were sensitive to the disturbances but after 3 to 6 years only the near-infrared (NIR) band had significant changes associated with the successional pathways of forest regrowth for all the disturbances considered. In general, the NIR values decreased immediately after disturbance, increased to maximum values with the establishment of pioneers and early successional tree species, and then decreased slowly and almost linearly to pre-disturbance conditions with the dynamics of forest succession. Statistical methods predict that NIR values will return to pre-disturbance values in about 39, 36, and 56 years for windthrow, clear-cut, and cut + burn disturbances, respectively. The NIR band captured the observed, and different, successional pathways of forest regrowth after windthrow, clear-cut, and cut + burn. Consistent with inferences from the NIR observations, ELM-FATES predicted higher peaks of biomass and stem density after clear-cuts than after windthrows. ELM-FATES also predicted recovery of forest structure and canopy coverage back to pre-disturbance conditions in 38 years after windthrows and 41 years after clear-cut. The similarity of ELM-FATES predictions of regrowth patterns after windthrow and clear-cut to those of the NIR results suggests the NIR band can be used to benchmark forest regrowth in ecosystem models. Our results show the potential of Landsat imagery data for mapping forest regrowth from different types of disturbances, benchmarking, and the improvement of forest regrowth models.

54 ENVIRONMENTAL SCIENCES↗

Using a surrogate-assisted Bayesian framework to calibrate the runoff-generation scheme in the Energy Exascale Earth System Model (E3SM) v1

Abstract. Runoff is a critical component of the terrestrial water cycle, and Earth system models (ESMs) are essential tools to study its spatiotemporal variability. Runoff schemes in ESMs typically include many parameters so that model calibration is necessary to improve the accuracy of simulated runoff. However, runoff calibration at a global scale is challenging because of the high computational cost and the lack of reliable observational datasets. In this study, we calibrated 11 runoff relevant parameters in the Energy Exascale Earth System Model (E3SM) Land Model (ELM) using a surrogate-assisted Bayesian framework. First, the polynomial chaos expansion machinery with Bayesian compressed sensing is used to construct computationally inexpensive surrogate models for ELM-simulated runoff at 0.5∘ × 0.5∘ for 1991–2010. The error metric between the ELM simulations and the benchmark data is selected to construct the surrogates, which facilitates efficient calibration and avoids the more conventional, but challenging, construction of high-dimensional surrogates for the ELM simulated runoff. Second, the Sobol' index sensitivity analysis is performed using the surrogate models to identify the most sensitive parameters, and our results show that, in most regions, ELM-simulated runoff is strongly sensitive to 3 of the 11 uncertain parameters. Third, a Bayesian method is used to infer the optimal values of the most sensitive parameters using an observation-based global runoff dataset as the benchmark. Our results show that model performance is significantly improved with the inferred parameter values. Although the parametric uncertainty of simulated runoff is reduced after the parameter inference, it remains comparable to the multimodel ensemble uncertainty represented by the global hydrological models in ISMIP2a. Additionally, the annual global runoff trend during the simulation period is not well constrained by the inferred parameter values, suggesting the importance of including parametric uncertainty in future runoff projections.

58 GEOSCIENCES↗

Modeling the topographic influence on aboveground biomass using a coupled model of hillslope hydrology and ecosystem dynamics

Abstract. Topographic heterogeneity and lateral subsurface flow at the hillslope scale of ≤1 km may have outsized impacts on tropical forest through their impacts on water available to plants under water-stressed conditions. However, vegetation dynamics and finer-scale hydrologic processes are not concurrently represented in Earth system models. In this study, we integrate the Energy Exascale Earth System Model (E3SM) land model (ELM) that includes the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), with a three-dimensional hydrology model (ParFlow) to explicitly resolve hillslope topography and subsurface flow and perform numerical experiments to understand how hillslope-scale hydrologic processes modulate vegetation along water availability gradients at Barro Colorado Island (BCI), Panama. Our simulations show that groundwater table depth (WTD) can play a large role in governing aboveground biomass (AGB) when drought-induced tree mortality is triggered by hydraulic failure. Analyzing the simulations using random forest (RF) models, we find that the domain-wide simulated AGB and WTD can be well predicted by static topographic attributes, including surface elevation, slope, and convexity, and adding soil moisture or groundwater table depth as predictors further improves the RF models. Different model representations of mortality due to hydraulic failure can change the dominant topographic driver for the simulated AGB. Contrary to the simulations, the observed AGB in the well-drained 50 ha forest census plot within BCI cannot be well predicted by the RF models using topographic attributes and observed soil moisture as predictors, suggesting other factors such as nutrient status may have a larger influence on the observed AGB. The new coupled model may be useful for understanding the diverse impact of local heterogeneity by isolating the water availability and nutrient availability from the other external and internal factors in ecosystem modeling.

54 ENVIRONMENTAL SCIENCES↗

A machine learning approach targeting parameter estimation for plant functional type coexistence modeling using ELM-FATES (v2.0)

Tropical forest dynamics play a crucial role in the global carbon, water, and energy cycles. However, realistically simulating the dynamics of competition and coexistence between different plant functional types (PFTs) in tropical forests remains a significant challenge. This study aims to improve the modeling of PFT coexistence in the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), a vegetation demography model implemented in the Energy Exascale Earth System Model (E3SM) land model (ELM), ELM-FATES. Specifically, we explore (1) whether plant trait relationships established from field measurements can constrain ELM-FATES simulations and (2) whether machine learning (ML)-based surrogate models can emulate the complex ELM-FATES model and optimize parameter selections to improve PFT coexistence modeling. We conducted three ensembles of ELM-FATES experiments at a tropical forest site near Manaus, Brazil. By comparing the ensemble experiments without (Exp-CTR) and with (Exp-OBS) consideration of observed trait relationships, we found that accounting for these relationships slightly improves the simulations of water, energy, and carbon variables when compared to observations but degrades the simulation of PFT coexistence. Using ML-based surrogate models trained on Exp-CTR, we optimized the trait parameters in ELM-FATES and conducted another ensemble of experiments (Exp-ML) with these optimized parameters. The proportion of PFT coexistence experiments significantly increased from 21 % in Exp-CTR to 73 % in Exp-ML. After filtering the experiments that allow for PFT coexistence to agree with observations (within 15 % tolerance), 33 % of the Exp-ML experiments were retained, which is a significant improvement compared to the 1.4 % in Exp-CTR. Exp-ML also accurately reproduces the annual means and seasonal variations in water, energy, and carbon fluxes and the field inventory of aboveground biomass. This study represents a reproducible method that utilizes machine learning to identify parameter values that improve model fidelity against observations and PFT coexistence in vegetation demography models for diverse ecosystems. Our study also suggests the need for new mechanisms to enhance the robust simulation of coexisting plants in ELM-FATES and has significant implications for modeling the response and feedbacks of ecosystem dynamics to climate change.

54 ENVIRONMENTAL SCIENCES↗

Modeling Spatial Heterogeneity in Surface Turbulent Heat Flux in the U.S. Southern Great Plains

Advances in numerical modeling of cloud dynamics are driving a need for improved land model prediction at convective storm scales. Here, satellite and ground-based vegetation remote sensing data were combined with land model experiments to more accurately characterize land surface spatial heterogeneity in the Community Land Model (CLM4.0). The new subgrid classification of plant functional types (PFT) and leaf area index (LAI) enables consistent comparison between models and ground-based flux measurements in the U.S. southern Great Plains. Errors in vegetation data sets (inferred from comparison between 250 m satellite and ground-based LAI), while large, had less impact on the simulated characteristics of spatial heterogeneity compared to errors in model representation of surface energy partitioning (between latent and sensible heat flux) and its relationship to LAI. Predicted spatial heterogeneity in surface energy partitioning was enhanced after replacing soil and stomatal resistance parameters with a new set that better predicts the observed relationship to LAI. These modifications increase the number of smaller (mesoscale) dry land patches having higher sensible heat flux. The parameter experiments suggest that vegetation state and processes (transpiration) act to broaden the size spectrum of surface heat flux heterogeneity, which can influence clouds and convective initiation. Moreover, improvements in vegetation input data and model parameters had partially compensating effects on surface flux heterogeneity, indicating the importance of evaluating input data and parameterizations together to improve prediction at higher spatial resolutions.

54 ENVIRONMENTAL SCIENCES↗

Simulating the Effects of Irrigation over the U.S. in a Land Surface Model Based on Satellite Derived Agricultural Data

A novel method is introduced for integrating satellite derived irrigation data and high-resolution crop type information into a land surface model (LSM). The objective is to improve the simulation of land surface states and fluxes through better representation of agricultural land use. Ultimately, this scheme could enable numerical weather prediction (NWP) models to capture land-atmosphere feedbacks in managed lands more accurately and thus improve forecast skill. Here we show that application of the new irrigation scheme over the continental US significantly influences the surface water and energy balances by modulating the partitioning of water between the surface and the atmosphere. In our experiment, irrigation caused a 12% increase in evapotranspiration (QLE) and an equivalent reduction in the sensible heat flux (QH) averaged over all irrigated areas in the continental US during the 2003 growing season. Local effects were more extreme: irrigation shifted more than 100 W/m from QH to QLE in many locations in California, eastern Idaho, southern Washington, and southern Colorado during peak crop growth. In these cases, the changes in ground heat flux (QG), net radiation (RNET), evapotranspiration (ET), runoff (R), and soil moisture (SM) were more than 3 W/m(sup 2), 20 W/m(sup 2), 5 mm/day, 0.3 mm/day, and 100 mm, respectively. These results are highly relevant to continental- to global-scale water and energy cycle studies that, to date, have struggled to quantify the effects of agricultural management practices such as irrigation. Based on the results presented here, we expect that better representation of managed lands will lead to improved weather and climate forecasting skill when the new irrigation scheme is incorporated into NWP models such as NOAA's Global Forecast System (GFS).

Ozdogan, Mutlu↗

Assimilation of GRACE Terrestrial Water Storage Data into a Land Surface Model

The NASA Gravity Recovery and Climate Experiment (GRACE) system of satellites provides observations of large-scale, monthly terrestrial water storage (TWS) changes. In. this presentation we describe a land data assimilation system that ingests GRACE observations and show that the assimilation improves estimates of water storage and fluxes, as evaluated against independent measurements. The ensemble-based land data assimilation system uses a Kalman smoother approach along with the NASA Catchment Land Surface Model (CLSM). We assimilated GRACE-derived TWS anomalies for each of the four major sub-basins of the Mississippi into the Catchment Land Surface Model (CLSM). Compared with the open-loop (no assimilation) CLSM simulation, assimilation estimates of groundwater variability exhibited enhanced skill with respect to measured groundwater. Assimilation also significantly increased the correlation between simulated TWS and gauged river flow for all four sub-basins and for the Mississippi River basin itself. In addition, model performance was evaluated for watersheds smaller than the scale of GRACE observations, in the majority of cases, GRACE assimilation led to increased correlation between TWS estimates and gauged river flow, indicating that data assimilation has considerable potential to downscale GRACE data for hydrological applications. We will also describe how the output from the GRACE land data assimilation system is now being prepared for use in the North American Drought Monitor.

Reichle, Rolf H.↗

Recent Progresses in Incorporating Human Land-Water Management into Global Land Surface Models Toward Their Integration into Earth System Models

The global water cycle has been profoundly affected by human land-water management. As the changes in the water cycle on land can affect the functioning of a wide range of biophysical and biogeochemical processes of the Earth system, it is essential to represent human land-water management in Earth system models (ESMs). During the recent past, noteworthy progress has been made in large-scale modeling of human impacts on the water cycle but sufficient advancements have not yet been made in integrating the newly developed schemes into ESMs. This study reviews the progresses made in incorporating human factors in large-scale hydrological models and their integration into ESMs. The study focuses primarily on the recent advancements and existing challenges in incorporating human impacts in global land surface models (LSMs) as a way forward to the development of ESMs with humans as integral components, but a brief review of global hydrological models (GHMs) is also provided. The study begins with the general overview of human impacts on the water cycle. Then, the algorithms currently employed to represent irrigation, reservoir operation, and groundwater pumping are discussed. Next, methodological deficiencies in current modeling approaches and existing challenges are identified. Furthermore, light is shed on the sources of uncertainties associated with model parameterizations, grid resolution, and datasets used for forcing and validation. Finally, representing human land-water management in LSMs is highlighted as an important research direction toward developing integrated models using ESM frameworks for the holistic study of human-water interactions within the Earths system.

biogeochemistry↗

Inferring Land Surface Model Parameters for the Assimilation of Satellite-Based L-Band Brightness Temperature Observations into a Soil Moisture Analysis System

The Soil Moisture and Ocean Salinity (SMOS) satellite mission provides global measurements of L-band brightness temperatures at horizontal and vertical polarization and a variety of incidence angles that are sensitive to moisture and temperature conditions in the top few centimeters of the soil. These L-band observations can therefore be assimilated into a land surface model to obtain surface and root zone soil moisture estimates. As part of the observation operator, such an assimilation system requires a radiative transfer model (RTM) that converts geophysical fields (including soil moisture and soil temperature) into modeled L-band brightness temperatures. At the global scale, the RTM parameters and the climatological soil moisture conditions are still poorly known. Using look-up tables from the literature to estimate the RTM parameters usually results in modeled L-band brightness temperatures that are strongly biased against the SMOS observations, with biases varying regionally and seasonally. Such biases must be addressed within the land data assimilation system. In this presentation, the estimation of the RTM parameters is discussed for the NASA GEOS-5 land data assimilation system, which is based on the ensemble Kalman filter (EnKF) and the Catchment land surface model. In the GEOS-5 land data assimilation system, soil moisture and brightness temperature biases are addressed in three stages. First, the global soil properties and soil hydraulic parameters that are used in the Catchment model were revised to minimize the bias in the modeled soil moisture, as verified against available in situ soil moisture measurements. Second, key parameters of the "tau-omega" RTM were calibrated prior to data assimilation using an objective function that minimizes the climatological differences between the modeled L-band brightness temperatures and the corresponding SMOS observations. Calibrated parameters include soil roughness parameters, vegetation structure parameters, and the single scattering albedo. After this climatological calibration, the modeling system can provide L-band brightness temperatures with a global mean absolute bias of less than 10K against SMOS observations, across multiple incidence angles and for horizontal and vertical polarization. Third, seasonal and regional variations in the residual biases are addressed by estimating the vegetation optical depth through state augmentation during the assimilation of the L-band brightness temperatures. This strategy, tested here with SMOS data, is part of the baseline approach for the Level 4 Surface and Root Zone Soil Moisture data product from the planned Soil Moisture Active Passive (SMAP) satellite mission.

Reichle, Rolf H.↗

Identifying and Evaluating the Relationships that Control a Land Surface Model's Hydrological Behavior

The inherent soil moisture-evaporation relationships used in today 's land surface models (LSMs) arguably reflect a lot of guesswork given the lack of contemporaneous evaporation and soil moisture observations at the spatial scales represented by regional and global models. The inherent soil moisture-runoff relationships used in the LSMs are also of uncertain accuracy. Evaluating these relationships is difficult but crucial given that they have a major impact on how the land component contributes to hydrological and meteorological variability within the climate system. The relationships, it turns out, can be examined efficiently and effectively with a simple water balance model framework. The simple water balance model, driven with multi-decadal observations covering the conterminous United States, shows how different prescribed relationships lead to different manifestations of hydrological variability, some of which can be compared directly to observations. Through the testing of a wide suite of relationships, the simple model provides estimates for the underlying relationships that operate in nature and that should be operating in LSMs. We examine the relationships currently used in a number of different LSMs in the context of the simple water balance model results and make recommendations for potential first-order improvements to these LSMs.

Koster, Randal D.↗