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At least 235 records · Page 13

A global DSCOVR/EPIC-based hourly/daily shortwave radiation/PAR dataset

Accurate characterization of the global downward shortwave (SW) and photosynthetically active radiation (PAR) is fundamental for Earth system modeling and global change research. Combined with a machine-learning method, we used the Earth Polychromatic Imaging Camera (EPIC) data onboard the Deep Space Climate Observatory (DSCOVR) to generate the global SW/PAR dataset at both hourly and daily temporal scales and 0.1degree×0.1degree spatial resolution. Covering a period from June, 2015 to June (about 4 years), 2019, the dataset consists of total SW/PAR and their direct and diffuse components. Our dataset will be valuable for understanding the diurnal cycles and seasonal patterns of ecosystem processes, as well as the solar energy utilizations

14 SOLAR ENERGY↗

Cas9 deletion of lutein biosynthesis in the marine alga Picochlorum celeri reduces photosynthetic pigments while sustaining high biomass productivity

Domestication of algae for food and renewable biofuels remains limited by the low photosynthetic efficiencies of processes that have evolved to be competitive for optimal light capture, incentivizing the development of large antennas in light-limiting conditions, thus decreasing efficient light utilization in cultivated ponds or photobioreactors. Reducing the pigment content to improve biomass productivity has been a strategy discussed for several decades and the ability to reduce pigment significantly is now fully at hand thanks to the widespread use of genome editing tools. Picochlorum celeri is one of the fastest growing marine algae identified and holds particular promise for outdoor cultivation, especially in saline water and warm climates. We show that while chlorophyll b is essential to sustain high biomass productivities under dense cultivation, removing Picochlorum celeri’s main carotenoid, lutein, leads to a decreased total chlorophyll content, higher a/ b ratio, reduced functional LHCII cross section and higher maximum quantum efficiencies at lower light intensities, resulting in an incremental increase in biomass productivity and increased PAR-to-biomass conversion efficiency. These findings further strengthen the existing strategies to improve photosynthetic efficiency and biomass production in algae.

59 BASIC BIOLOGICAL SCIENCES↗

Fic Proteins Inhibit the Activity of Topoisomerase IV by AMPylation in Diverse Bacteria

The Fic (filamentation induced by cyclic AMP) domain is a widely distributed motif with a conserved sequence of HPFx[D/E]GN[G/K]R, some of which regulate cellular activity by catalyzing the transfer of the AMP moiety from ATP to protein substrates. Some Fic proteins, including Fic-1 from the soil bacterium Pseudomonas fluorescens strain 2P24, have been shown to inhibit bacterial DNA replication by AMPylating the subunit B of DNA gyrase (GyrB), but the biochemical activity and cellular target of most Fic proteins remain unknown. Here, we report that Fic-2, which is another Fic protein from strain 2P24 and Fic-1 AMPylate the topoisomerase IV ParE at Tyr 109 . We also examined Fic proteins from several phylogenetically diverse bacteria and found that those from Yersinia pseudotuberculosis and Staphylococcus aureus AMPylate ParE and GrlB, the counterpart of ParE in Gram-positive bacteria, respectively. Modification by Fic-1 of P. fluorescens and FicY of Y. pseudotuberculosis inhibits the relaxation activity of topoisomerase IV. Consistent with the inhibition of ParE activity, ectopic expression of these Fic proteins causes cell filamentation akin to the canonical par phenotype in which nucleoids are assembled in the center of elongated cells, a process accompanied by the induction of the SOS response. Our results establish that Fic proteins from diverse bacterial species regulate chromosome division and cell separation in bacteria by targeting ParE.

59 BASIC BIOLOGICAL SCIENCES↗

Models and Processes to Extract Drug-like Molecules From Natural Language Text

Researchers worldwide are seeking to repurpose existing drugs or discover new drugs to counter the disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). A promising source of candidates for such studies is molecules that have been reported in the scientific literature to be drug-like in the context of viral research. However, this literature is too large for human review and features unusual vocabularies for which existing named entity recognition (NER) models are ineffective. We report here on a project that leverages both human and artificial intelligence to detect references to such molecules in free text. We present 1) a iterative model-in-the-loop method that makes judicious use of scarce human expertise in generating training data for a NER model, and 2) the application and evaluation of this method to the problem of identifying drug-like molecules in the COVID-19 Open Research Dataset Challenge (CORD-19) corpus of 198,875 papers. We show that by repeatedly presenting human labelers only with samples for which an evolving NER model is uncertain, our human-machine hybrid pipeline requires only modest amounts of non-expert human labeling time (tens of hours to label 1778 samples) to generate an NER model with an F-1 score of 80.5%—on par with that of non-expert humans—and when applied to CORD’19, identifies 10,912 putative drug-like molecules. This enriched the computational screening team’s targets by 3,591 molecules, of which 18 ranked in the top 0.1% of all 6.6 million molecules screened for docking against the 3CLPro protein.

60 APPLIED LIFE SCIENCES↗

Incorporating polar field data for improved solar flare prediction

In this paper, we consider incorporating data associated with the sun’s north and south polar field strengths to improve solar flare prediction performance using machine learning models. When used to supplement local data from active regions on the photospheric magnetic field of the sun, the polar field data provides global information to the predictor. While such global features have been previously proposed for predicting the next solar cycle’s intensity, in this paper we propose using them to help classify individual solar flares. We conduct experiments using HMI data employing four different machine learning algorithms that can exploit polar field information. Additionally, we propose a novel probabilistic mixture of experts model that can simply and effectively incorporate polar field data and provide on-par prediction performance with state-of-the-art solar flare prediction algorithms such as the Recurrent Neural Network (RNN). Our experimental results indicate the usefulness of the polar field data for solar flare prediction, which can improve Heidke Skill Score (HSS2) by as much as 10.1%.

79 ASTRONOMY AND ASTROPHYSICS↗

Quantum Vision Transformers for Quark–Gluon Classification

We introduce a hybrid quantum-classical vision transformer architecture, notable for its integration of variational quantum circuits within both the attention mechanism and the multi-layer perceptrons. The research addresses the critical challenge of computational efficiency and resource constraints in analyzing data from the upcoming High Luminosity Large Hadron Collider, presenting the architecture as a potential solution. In particular, we evaluate our method by applying the model to multi-detector jet images from CMS Open Data. The goal is to distinguish quark-initiated from gluon-initiated jets. We successfully train the quantum model and evaluate it via numerical simulations. Using this approach, we achieve classification performance almost on par with the one obtained with the completely classical architecture, considering a similar number of parameters.

Comajoan Cara, Marçal (ORCID:0009000126263752)↗

Achieving High Strength and Creep Resistance in Inconel 740H Superalloy through Wire-Arc Additive Manufacturing and Thermodynamic-Guided Heat Treatment

Inconel 740H superalloy is commonly used in advanced ultra-supercritical power plants since it possesses excellent strength and creep resistance. This study investigates the microstructure and mechanical properties of Inconel 740H superalloy fabricated using wire-arc additive manufacturing. The as-printed microstructure consisted of columnar γ grains with the Laves phase and (Nb, Ti)C carbides as secondary phases. The anisotropy in grain structure increased from the bottom to the top regions, while the hardness was highest in the middle portion of the build. To guide the post-heat treatment design, thermodynamic and kinetic simulations were employed to predict the temperature and time. Complete recrystallization with the Laves phase dissolution occurred throughout the build after homogenization at 1200 °C for 2 h. The peak hardness was achieved after aging at 760 °C for 12 h with the M 23 C 6 carbides decorating the grain boundaries and γ’ precipitates in the grain interior. The yield strength (655 MPa) and ductility (29.5%) in the post-heat treated condition exceeded the design targets (620 MPa, 20%). Stress rupture tests at 750 °C showed that the high-temperature performance was at par with the wrought counterparts. The fracture mode after rupture was identified to be intergranular with the presence of grain boundary cavities along with grain boundary sliding.

36 MATERIALS SCIENCE↗

An Expanded Set of Los Alamos OPLIB Tables in MESA: Type-1 Rosseland-mean Opacities and Solar Models

Abstract We present a set of 1194 Type-1 Rosseland-mean opacity tables for four different metallicity mixtures. These new Los Alamos OPLIB atomic radiative opacity tables are an order of magnitude larger in number than any previous opacity table release, and span regimes where previous opacity tables have not existed. For example, the new set of opacity tables expands the metallicity range to Z = 10 −6 to Z = 0.2, which allows improved accuracy of opacities at low and high metallicity, increases the table density in the metallicity range Z = 10 −4 to Z = 0.1 to enhance the accuracy of opacities drawn from interpolations across neighboring metallicities, and adds entries for hydrogen mass fractions between X = 0 and X = 0.1 including X = 10 −2 , 10 −3 , 10 −4 , 10 −5 , 10 −6 that can improve stellar models of hydrogen deficient stars. We implement these new OPLIB radiative opacity tables in MESA and find that calibrated solar models agree broadly with previously published helioseismic and solar neutrino results. We find differences between using the new 1194 OPLIB opacity tables and the 126 OPAL opacity tables range from ≈20% to 80% across individual chemical mixtures, up to ≈8% and ≈15% at the bottom and top of the solar convection zone respectively, and ≈7% in the solar core. We also find differences between standard solar models using different opacity table sources that are on par with altering the initial abundance mixture. We conclude that this new, open-access set of OPLIB opacity tables does not solve the solar modeling problem, and suggest the investigation of physical mechanisms other than the atomic radiative opacity.

79 ASTRONOMY AND ASTROPHYSICS↗

The Zwicky Transient Facility Bright Transient Survey. III. BTSbot: Automated Identification and Follow-up of Bright Transients with Deep Learning

Abstract The Bright Transient Survey (BTS) aims to obtain a classification spectrum for all bright ( m peak ≤ 18.5 mag) extragalactic transients found in the Zwicky Transient Facility (ZTF) public survey. BTS critically relies on visual inspection (“scanning”) to select targets for spectroscopic follow-up, which, while effective, has required a significant time investment over the past ∼5 yr of ZTF operations. We present BTSbot , a multimodal convolutional neural network, which provides a bright transient score to individual ZTF detections using their image data and 25 extracted features. BTSbot is able to eliminate the need for daily human scanning by automatically identifying and requesting spectroscopic follow-up observations of new bright transient candidates. BTSbot recovers all bright transients in our test split and performs on par with scanners in terms of identification speed (on average, ∼1 hr quicker than scanners). We also find that BTSbot is not significantly impacted by any data shift by comparing performance across a concealed test split and a sample of very recent BTS candidates. BTSbot has been integrated into Fritz and Kowalski , ZTF’s first-party marshal and alert broker, and now sends automatic spectroscopic follow-up requests for the new transients it identifies. Between 2023 December and 2024 May, BTSbot selected 609 sources in real time, 96% of which were real extragalactic transients. With BTSbot and other automation tools, the BTS workflow has produced the first fully automatic end-to-end discovery and classification of a transient, representing a significant reduction in the human time needed to scan.

Rehemtulla, Nabeel (ORCID:0000000256832389)↗

Rapid Inference of Logic Gate Neural Networks for Anomaly Detection in High Energy Physics

The increasing data rates and complexity of detectors at the Large Hadron Collider (LHC) necessitate fast and efficient machine learning models, particularly for rapid selection of what data to store, known as triggering. Building on recent work in differentiable logic gates, we present a public implementation of a Convolutional Differentiable Logic Gate Neural Network (CLGN). We apply this to detecting anomalies at the Level-1 Trigger at CMS using public data from the CICADA project. We demonstrate that the CLGN achieves physics performance on par with or superior to conventional quantized neural networks. We also synthesize an LGN for a Field-Programmable Gate Array (FPGA) and show highly promising FPGA characteristics, notably zero Digital Signal Processor (DSP) resource usage. This work highlights the potential of logic gate networks for high-speed, on-detector inference in High Energy Physics and beyond.

FOS: Physical sciences↗

An overview of the E3SM version 2 large ensemble and comparison to other E3SM and CESM large ensembles

Abstract. This work assesses a recently produced 21-member climate model large ensemble (LE) based on the U.S. Department of Energy's Energy Exascale Earth System Model (E3SM) version 2 (E3SM2). The ensemble spans the historical era (1850 to 2014) and 21st century (2015 to 2100), using the SSP370 pathway, allowing for an evaluation of the model's forced response. A companion 500-year preindustrial control simulation is used to initialize the ensemble and estimate drift. Characteristics of the LE are documented and compared against other recently produced ensembles using the E3SM version 1 (E3SM1) and Community Earth System Model (CESM) versions 1 and 2. Simulation drift is found to be smaller, and model agreement with observations is higher in versions 2 of E3SM and CESM versus their version 1 counterparts. Shortcomings in E3SM2 include a lack of warming from the mid to late 20th century, likely due to excessive cooling influence of anthropogenic sulfate aerosols, an issue also evident in E3SM1. Associated impacts on the water cycle and energy budgets are also identified. Considerable model dependence in the response to both aerosols and greenhouse gases is documented and E3SM2's sensitivity to variable prescribed biomass burning emissions is demonstrated. Various E3SM2 and CESM2 model benchmarks are found to be on par with the highest-performing recent generation of climate models, establishing the E3SM2 LE as an important resource for estimating climate variability and responses, though with various caveats as discussed herein. As an illustration of the usefulness of LEs in estimating the potential influence of internal variability, the observed CERES-era trend in net top-of-atmosphere flux is compared to simulated trends and found to be much larger than the forced response in all LEs, with only a few members exhibiting trends as large as observed, thus motivating further study.

58 GEOSCIENCES↗

Experimental Study of a Novel Semi-Transparent Bi-Facial Agri-Voltaic System: Initial Results

Solar (photovoltaic)-agriculture practices have experienced notable progress across several countries over the past few decades, creating a field widely known as agrivoltaics. This co-location practice has proved effective for certain crops that prefer partial shade like tomatoes, lettuce, and peppers, although it is less effective for crops needing more sun. Availability of natural sunlight with a specific spectral signature is necessary for agricultural practices as many plant species require an optimum-level and quality of sunlight for photosynthesis. The goal of this work is to model and validate ground-level irradiance for a semi-transparent bifacial solar collector equipped with a custom spectral reflector. By introducing intentional gaps between opaque solar cells, we hope to allow 50% of visible light to pass through the module. Additionally, this technology could reduce the soil temperature by 2° C, improve moisture retention, and enhance yield by providing partial solar radiation. In our model, we can calculate the total solar irradiance for the plants as a function of the cell distribution, material absorption, height of the panel and time of year with a spatial resolution of 0.0625 m2. When comparing theoretical estimates to experimental measurements of photosynthetically active radiation (PAR), we find a discrepancy of 32-48%, and a discrepancy of 19-38% after correction with TMY data.

McGraw, Duncan (ORCID:0000000256388118)↗

Microbial electro-photosynthesis

Methods and apparatus for growing photosynthetic organisms lacking Photosystem II (PSII) function using externally supplied electrons shuttled into the organism using redox mediators to improve photosynthetic output and to produce and recover chemicals of interest. By removing PSII, all PAR photons are funneled toward Photosystem I, thereby significantly increasing the theoretical photon utilization efficiency for CO2 fixation, energy storage and the capacity to synthesize valuable chemicals. Additional genetic modification can be performed to insert or enhance specific metabolic pathways to generate products of commercial interest.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Shear Assisted Processing and Extrusion of Thin-Walled AA6063 Tubing

Shear Assisted Processing and Extrusion (ShAPE) was used to fabricate thin-walled AA6063 tubing with improved mechanical properties compared to conventional extrusion. Namely, tensile properties for ShAPE extrusions after T5 heat treating far exceed conventional T5 properties and are on par with T6 tensile properties. Die rotational speed did not affect tensile properties, although increased extrusion speed did lead to moderate increases in elongation.

Friction Extrusion, ShAPE, AA 6063, friction stir ↗

FNAL PIP-II Accumulator Ring

The FNAL accelerator complex is poised to reach MW neutrino beams on target for the exploration of the dark sector physics and rare physics program spaces. Future operations of the complex will include CW linac operations at beam intensities that have not been seen before \cite{PIP2,RCS_LOI}. The ambitious beam program relies on multi-turn H$^{-}$ injection into the FNAL Booster and then extracted into delivery rings or the Booster Neutrino Beam (BNB) 8 GeV HEP program. A new rapid-cycling synchrotron (RCS) will be required to reach the LBNF goal of 2.4 MW because of intense space-charge limitations. There are many accelerator engineering challenges that are already known and many that will be discovered. This proposal calls for an intermediate step that will both facilitate the operation of Booster in the PIP-II era and gain operational experience associated with high power injection rings. This step includes the design, construction and installation of a 0.8 GeV accumulator ring (upgradeable to 1+ GeV) to be located in the PIP-II Booster Transfer Line (BTL). The PIP-II accumulator ring (PAR) may be primarily designed around permanent magnets or use standard iron core magnet technology with an aperture selected to accommodate the desired high intensity protons at 0.8 GeV.

43 PARTICLE ACCELERATORS↗

Piston Bowl Geometry Effects on Gasoline Compression Ignition in a Heavy-Duty Diesel Engine

A design optimization campaign was conducted to search for improved combustion profiles that enhance gasoline compression ignition in a heavy-duty diesel engine with a geometric compression ratio of 17.3. A large-scale design of experiments approach was used for the optimization, employing three-dimensional computational fluid dynamics simulations. The main parameters explored include geometric features, injector specifications, and swirl motion. Both stepped-lip and re-entrant bowls were included in order to assess their respective performance implications. A total of 256 design candidates were prepared using the software package CAESES for automated and simultaneous geometry generation and combustion recipe perturbation. The design optimization was conducted for three engine loads representing light to medium load conditions. The design candidates were evaluated for fuel efficiency, emissions, fuel-air mixing, and global combustion behavior. Simulation results showed that the optimum designs were all stepped-lip bowls, due to improvements in fuel-air mixing, as well as reduced heat loss and emissions formation. Improvements in indicated specific fuel consumption of up to 3.2% were achieved while meeting engine-out NOx emission targets of 1-1.5 g/kW center dot h. Re-entrant bowls performed worse compared to the baseline design, and significant performance variations occurred across the load points. Specifically, the re-entrant bowls were on par with the stepped-lip bowls under light load conditions, but significant deteriorations occurred under higher load conditions. As a final task, selected optimized designs were then evaluated under full-load conditions.

CFD↗

Crucible Melter Simulation in Nek5000

Nuclear tank waste at the Hanford site is slated for vitrification in large scale refractory-lined melters to transform it into a stable borosilicate waste form suitable for long-term storage or disposal. Molten glass corrodes the refractory lining over time at a rate correlated to the velocity of molten glass against the refractory-lined wall. To properly design a melter and plan for maintenance, it is necessary to accurately model the glass flow and find the correlation between flow velocity and corrosion rate. This modeling was started in STAR-CCM+ CFD software and is being continued in Nek5000 for its fast-running and quick turnaround code. This poster explains the basic process of reconstructing the geometry, fluid properties, and heating of test melters in Nek5000. The geometry is imported from a mesh file and boundary conditions assigned based on surface IDs. The fluid properties are set in the .par and .usr case files. The heating of the actual crucibles in joule heating with electrodes but simulated in Nek5000 with a volumetric heat source term. This volumetric heat source is fit to the actual heating profile with piecewise polynomials and exponentials. Basic results and verification methods are explained in the poster, as well as further work that must be done to complete modeling.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Evaluation and Comparison of a New Robust Waveform Against Direct Sequence Spread Spectrum for HF

This paper provides a comprehensive performance comparison between a filter bank multicarrier spread-spectrum (FBMC-SS) waveform and a current robust military waveform; namely, MIL-STD-188-110D, Waveform 0, proposed for communications through ionospheric/skywave HF channels. Waveform 0 is effectively a direct sequence spread spectrum waveform that uses the Walsh multi-codes to enhance the information transmission rate. It may thus be referred to as Walsh-DSSS. FBMC-SS, on the other hand, makes use of filter banks to provide excellent performance when the received signal is subject to partial band interference. Successful application of FBMC-SS for communications across skywave HF channels has been previously demonstrated, both theoretically and through experimental work. However, very little has been done to contrast FBMC-SS against Walsh-DSSS. The goal of this paper is to first add new features to FBMC-SS to bring it on par with Walsh- DSSS. These features include: (i), introduction of multi-codes that achieve a comparable (or better) data rate to the Walsh-DSSS; and (ii), addition of a scrambling step applied to the multi-codes to make the receiver detection robust against widely spread multipaths. With this established, in the second part of the paper, we examine the performance of the developed FBMC-SS against Walsh-DSSS when both are applied for communications across skywave HF channels. The two waveforms are compared both through a theoretical study and through experimental works across several skywave channels ranging from hundreds to thousands of kilometers.

99 GENERAL AND MISCELLANEOUS↗