Optimising the use of gene expression data to predict plant metabolic pathway memberships
Not provided.
Plant Sciences↗
SEARCH · Search NASA
Results for “spatiotemporal data”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
A Spectral Fingerprinting Method for Deriving Consistent Climate Data Records from Multiple Satellite IR Sounders
Deriving Climate Data Records (CDRs) from multiple IR sounders such AIRS on Aqua, CrIS on S-NPP, NOAA20 and JPSS-2, IASI on Metop A, B, and C requires from current operational products are challenging due to different radiative transfer models and retireavl algorithms used for processing level 2 data. We developed a Climate Fingerprinting Sounder Product (ClimFiSP) algorithm, which uses a single set of radiative kernels a robust spectral fingerprinting method to performs retrievals using spatiotemporally averaged L1 hyperspectral radiances directly. The ClimFiSP algorithm provides accurate data fusion CDR products from multiple satellite sensors. We have applied this method to both AIRS and CrIS (on SNPP and on NOAA 20) data and generated two decades climate data records for atmospheric temperature, water vapor, cloud, trace gases, and surface skin temperature. We plan to add IASI to the CDR data set in the future. The ClimFiSP is being transitioned to NASA GES DISC data center for public access.
Xu Liu↗
Using High-Resolution NSRDB Data to Evaluate Cloud Mask Forecast from WRF-Solar EPS
Validating spatiotemporal distributions of cloud forecasts using numerical weather prediction (NWP) models is difficult as this requires high-quality cloud-property at significantly high spatial and temporal resolution over extended periods of time. Observations of cloud properties, such as cloud mask, cloud optical thickness, and cloud type, are vital for assessing the capability of NWP models to forecast various types of clouds. Using the National Solar Radiation Database (NSRDB), this research evaluates ensemble cloud-mask predictions from the WRF-Solar ensemble prediction system (WRF-Solar EPS). From the WRF-Solar EPS, day-ahead solar forecasts for the contiguous United States (CONUS) for 2018 are simulated. Given the NSRDB data is accessible at a resolution of 2 km, we can calculate the cloud fraction across the 9-km grid of WRF-Solar EPS. This allows us to spatially assess the cloud-mask forecasts using two methods against the high-resolution NSRDB: (a) considering all 2-km NSRDB clouds in the forecast domain (EMAll), and (b) using a minimum cloud fraction threshold of 50% to designate a pixel as cloudy (EMP50). The low-resolution cloud masks from WRF-Solar EPS are evaluated directly against the cloud-resolving scale gridded observations from NSRDB using EMAll. With EMP50, we presume that scenes with less than 50% cloud cover from the 2-km NSRDB are clear. Thus, this assessment approach allows for a fair comparison with WRF-Solar EPS resolved to a 9-km grid. A method of point-by-point verification is used to evaluate dichotomous (yes/no) cloud mask predictions against the NSRDB. For each pixel of model extent, cloud frequency and traditional metrics (e.g., probability of detection, false alarm rate, and hit rate, etc.) are computed and compared with satellite-derived data sets. Mismatched cloud frequency (MCF) is computed to measure the present capability of WRF-Solar EPS in representing various types of clouds, which are categorized using three levels of cloud top height (CTH) and cloud optical depth (COD) across entire CONUS. Preliminary results show that the WRF-Solar EPS provides MCF values ranging from 9% to 46%, 16% to 33%, and 8% to 27% for low-level, middle-level, and high-level clouds, respectively, for three CTHs. The model produces MCFs ranging from 27% to 46%, 13% to 34%, and 8% to 19% for thin, medium-thickness, and thick clouds, respectively, for three CODs. The presentation will include a detailed description of the current outcomes as well as potential future extensions. The evaluation approach established in this study is readily extensible to the evaluation of cloud predictions from different ensemble NWP models. In addition, the findings of the suggested evaluation technique aid in identifying model weaknesses and will ultimately lead to advances in WRF-Solar EPS's skill in predicting clouds and solar irradiance.
cloud mask forecast↗
Developing a Cloud-Based ArcGIS Image Service for TROPOMI Level 2 Data: Preprocessing, Transformation, and Publication
TROPOMI, the Tropospheric Monitoring Instrument aboard the Sentinel-5 Precursor satellite, provides high spatiotemporal resolution atmospheric measurements. It is essential for monitoring air quality, greenhouse gases, and other trace gases. Integrating TROPOMI Level 2 data into an ArcGIS Image Service marks a significant advancement in the accessibility and utility of satellite-derived environmental information for GIS applications. This paper details the methodology for building an ArcGIS Image Service tailored to handle TROPOMI Level 2 data, with a focus on preprocessing, transformation, and cloud-based publication. The workflow utilizes Python and ArcPy for data reformatting, reprojection, and updating, ensuring efficient processing and cloud-based notifications. By establishing a robust pipeline, the ArcGIS Image Service provides real-time access to TROPOMI Level 2 data, enabling users to visualize, analyze, and interpret atmospheric phenomena effectively.
Level 2 Data, ArcGIS, Image Service, ArcPy, OGC↗
An ensemble of 48 physically perturbed model estimates of the 1/8° terrestrial water budget over the conterminous United States, 1980–2015
Terrestrial water budget (TWB) data over large domains are of high interest for various hydrological applications. Spatiotemporally continuous and physically consistent estimations of TWB rely on land surface models (LSMs). As an augmentation of the operational North American Land Data Assimilation System Phase 2 (NLDAS-2) four-LSM ensemble, this paper describes a dataset simulated from an ensemble of 48 physics configurations of the Noah LSM with multi-physics options (Noah-MP). The 48 Noah-MP physics configurations are selected to give a representative cross-section of commonly used LSMs for parameterizing runoff, atmospheric surface layer turbulence, soil moisture limitation on photosynthesis, and stomatal conductance. The dataset spans from 1980 to 2015 over the conterminous United States (CONUS) at a monthly temporal resolution and a 1/8° spatial resolution. The dataset variables include total evapotranspiration and its constituents (canopy evaporation, soil evaporation, and transpiration), runoff (the surface and subsurface components), as well as terrestrial water storage (snow water equivalent, four-layer soil water content from the surface down to 2 m, and the groundwater storage anomaly). The dataset is available at https://doi.org/10.5281/zenodo.7109816. Evaluations carried out in this study and previous investigations show that the ensemble per forms well in reproducing the observed terrestrial water storage, snow water equivalent, soil moisture, and runoff. Noah-MP complements the NLDAS models well, and adding Noah-MP consistently improves the NLDAS es timations of the above variables in most areas of CONUS. Besides, the perturbed-physics ensemble facilitates the identification of model deficiencies. The parameterizations of shallow snow, spatially varying groundwater dynamics, and near-surface atmospheric turbulence should be improved in future model versions.
54 ENVIRONMENTAL SCIENCES↗
CubeSat constellations provide enhanced crop phenology and digital agricultural insights using daily leaf area index retrievals
Satellite remote sensing has great potential to deliver on the promise of a data-driven agricultural revolution, with emerging space-based platforms providing spatiotemporal insights into precision-level attributes such as crop water use, vegetation health and condition and crop response to management practices. Using a harmonized collection of high-resolution Planet CubeSat, Sentinel-2, Landsat-8 and additional coarser resolution imagery from MODIS and VIIRS, we exploit a multi-satellite data fusion and machine learning approach to deliver a radiometrically calibrated and gap-filled time-series of daily leaf area index (LAI) at an unprecedented spatial resolution of 3 m. The insights available from such high-resolution CubeSat-based LAI data are demonstrated through tracking the growth cycle of a maize crop and identifying observable within-field spatial and temporal variations across key phenological stages. Daily LAI retrievals peaked at the tasseling stage, demonstrating their value for fertilizer and irrigation scheduling. An evaluation of satellite-based retrievals against field-measured LAI data collected from both rain-fed and irrigated fields shows high correlation and captures the spatiotemporal development of intra- and inter-field variations. Novel agricultural insights related to individual vegetative and reproductive growth stages were obtained, showcasing the capacity for new high-resolution CubeSat platforms to deliver actionable intelligence for precision agricultural and related applications.
54 ENVIRONMENTAL SCIENCES↗
Multimodal sensor fusion framework for residential building occupancy detection
For several years now, smart building energy systems have been a research area of intensive activity. In light of the increasing need for sustainable buildings and energy systems, this trend motivates an increasing need for a solution to reduce carbon dioxide emissions and improve energy efficiency. This work proposes a high-performing and transferable occupancy detection framework that combines sensor data from different data modalities, including time series environmental data (temperature, humidity, and illuminance), image data, and acoustic energy data using ensemble method. To draw out the best prediction performance in each modality, the proposed framework was developed, including various models that were designed to learn the occupancy patterns reflected in the physical data streams. To tackle the time series environmental data, we designed two variants of an occupancy detection spatiotemporal pattern network (Occ-STPN) that performs both feature level and decision level fusion, respectively. We also propose a new metric; the fading memory mean square error (FMMSE), that provides a fair evaluation and penalization of delayed occupancy predictions. Multiple open-sourced datasets, including the Electricity Consumption and Occupancy and the University of California, Irvine's (UCI) building occupancy detection dataset, along with our own real data collected from six different houses, were used to validate the algorithms' performance. The experimental results presented herein break down the performance for each sensing modality, and a detailed analysis of the performance is also discussed.
32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
The Historical Development of Large‐Scale Paleoclimate Field Reconstructions Over the Common Era
Abstract Climate field reconstructions (CFRs) combine modern observational data with paleoclimatic proxies to estimate climate variables over spatiotemporal grids during time periods when widespread observations of climatic conditions do not exist. The Common Era (CE) has been a period over which many seasonally‐ and annually‐resolved CFRs have been produced on regional to global scales. CFRs over the CE were first produced in the 1970s using dendroclimatic records and linear regression‐based approaches. Since that time, many new CFRs have been produced using a wide range of proxy data sets and reconstruction techniques. We assess the early history of research on CFRs for the CE, which provides context for our review of advances in CFR research over the last two decades. We review efforts to derive gridded hydroclimatic CFRs over continental regions using networks of tree‐ring proxies. We subsequently explore work to produce hemispheric‐ and global‐scale CFRs of surface temperature using multi‐proxy data sets, before specifically reviewing recently‐developed data assimilation techniques and how they have been used to produce simultaneous reconstructions of multiple climatic fields globally. We then review efforts to develop standardized and digitized databases of proxy networks for use in CFR research, before concluding with some thoughts on important next steps for CFR development.
Smerdon, Jason E.↗
AI-Enabled Robots for Automated Nondestructive Evaluation and Repair of Power Plant Boilers. Final Report
Boiler failure could cause loss of life and safety issues, cost hundreds of thousands of dollars in equipment repairs, property damage and production losses, and drive up the cost of electric power. Boiler maintenance is challenging and risky for inspectors working on scaffolding in confined hazardous spaces inside of a boiler and sometimes the space is hard to access. The operation is also time-consuming due to the large area of vertical structures for inspection and the tremendous effort needed for scaffolding. Recently, the use of robotics (e.g., drones and crawlers) in power plants for maintenance is growing rapidly. However, the existing robotics solutions show two notable technological gaps: no live repair capability, and no Artificial Intelligence (AI) for smart autonomy. The objective of this project is to develop an integrated autonomous robotic platform that is equipped with compact non-destructive evaluation (NDE) sensors to perform live inspection, operates onboard repair devices to perform live repair, and uses AI for intelligent data fusion and predictive analysis for automated and smart spatiotemporal inspection, analysis and repair of the furnace walls in coal-fired boilers. The approach to achieve the objective includes developing NDE sensors with signal processing techniques, designing and evaluating repair devices for robots based on fusion and solid-state technologies, and an autonomous robotic platform that can attach to and navigate on boiler furnace walls using magnetic drive tracks. The robot is also powered by AI to automate data gathering (e.g., 3D mapping and damage localization) and predictive analysis. This project has advanced the state-of-the-art by providing technological breakthroughs including compact NDE and repair tools for robots, AI capabilities for smart autonomy, and a robotic platform for automated boiler maintenance. This project has great potential to result in significant benefits including limiting or eliminating the need to send operators to assess difficult-to-access or hazardous areas, enabling automated live inspection and repair, avoiding time consuming scaffolding (especially for partial maintenance during unplanned outage), collecting comprehensive and well-organized data smartly, and avoiding or limiting the need for onsite or remote piloting technicians. The impacts can be tremendous in terms of the time and cost savings, reducing the risk for human operators, and increasing boiler reliability, usability, and efficiency. In addition, by developing the new technologies on the autonomous inspection and repair robot, by involving multiple undergraduate and graduate students working together with the faculty members on this project, and by generating knowledge and building up collaborations with industrial partners, this effort will significantly update the education capabilities, support long-term fundamental research, and maintain the leadership of Colorado School of Mines and Michigan State University in energy fields.
20 FOSSIL-FUELED POWER PLANTS↗
An overview of visualization and visual analytics applications in water resources management
Recent advances in information, communication, and environmental monitoring technologies have increased the availability, spatiotemporal resolution, and quality of water-related data, thereby leading to the emergence of many innovative big data applications. Among these applications, visualization and visual analytics, also known as the visual computing techniques, empower the synergy of computational methods (e.g., machine learning and statistical models) with human reasoning to improve the understanding and solution toward complex science and engineering problems. These approaches are frequently integrated with geographic information systems and cyberinfrastructure to provide new opportunities and methods for enhancing water resources management. Here, we present a comprehensive review of recent hydroinformatics applications that employ visual computing techniques to (1) support complex data-driven research problems, and (2) support the communication and decision-makings in the water resources management sector. Then, we conduct a technical review of the state-of-the-art web-based visualization technologies and libraries to share our experiences on developing shareable, adaptive, and interactive visualizations and visual interfaces for water resources management applications. We close with a vision that applies the emerging visual computing technologies and paradigms to develop the next generation of hydroinformatics applications.
54 ENVIRONMENTAL SCIENCES↗
Hydrologic applicability of satellite-based precipitation estimates for irrigation water management in the data-scarce region
Reliable precipitation estimates are crucial for planning and managing water resources, monitoring hydrologic extremes, and fulfilling irrigation water requirements. Accurate precipitation estimates are particularly challenging in complex mountain terrains, where monitoring gauges are often sparsely distributed due to their remote locations, and high installation and long-term operation costs. Recent advances in satellite-based precipitation estimates offer promising opportunities to improve our understanding of hydrologic processes and their applications for irrigation water management. Several datasets are available varying considerably in terms of their data sources, quality control methods, estimation procedure, and spatiotemporal resolutions. Choosing the most suitable dataset for a particular application is a complex task. In this study, we (1) evaluate the performance of six satellite-based precipitation estimates (SPEs): i) CHIRPS v2.0, ii) CMORPH v1.0, iii) ERA5, iv) IMERG v6, v) MSWEP v2.8, and vi) PERSIANN-CDR against the gauge precipitation using continuous statistical and categorical indices, (2) integrate SPEs with a calibrated semi-distributed hydrologic model to predict streamflow, and (3) demonstrate practical implications of improved streamflow prediction for irrigation water management in the central Himalayan region, Nepal. Our results illustrate that satellite-based precipitation estimates have competitive performance in capturing a wide range of rainfall characteristics, with demonstrated variability across river basins and time scales. Further, there are no significant discrepancies observed in satellite-based precipitation estimates for estimating irrigation water requirements for the three major crops (maize, wheat, and paddy) during the cropping period across the selected river basins, showing a greater promise for irrigation water management planning and decision making.
54 ENVIRONMENTAL SCIENCES↗
Developing a Lagrangian Frame Transformation on Satellite Data to Study Cloud Microphysical Transitions in Arctic Marine Cold Air Outbreaks
Abstract Arctic marine cold air outbreaks (CAOs) generate distinct and dynamic cloud regimes due to intense air‐sea interactions. To understand the temporal evolution of CAO cloud properties and compare different CAO events, a Lagrangian perspective is particularly useful. We developed a novel technique that enables the conversion of inherently Eulerian satellite data into a Lagrangian framework, combining the broad spatiotemporal coverage of satellite observations with the advantages of Lagrangian tracking. This technique was applied to eight CAO cases associated with a recent field campaign. Our results reveal a striking contrast among the cases in terms of cloud‐top phase transitions, providing new insights into the evolution of CAO cloud properties.
Lagrangian analysis↗
Revising the Role of Cortical Cytoskeleton during Secretion: Actin and Myosin XI Function in Vesicle Tethering
In plants, secretion of cell wall components and membrane proteins plays a fundamental role in growth and development as well as survival in diverse environments. Exocytosis, as the last step of the secretory trafficking pathway, is a highly ordered and precisely controlled process involving tethering, docking, and fusion of vesicles at the plasma membrane (PM) for cargo delivery. Although the exocytic process and machinery are well characterized in yeast and animal models, the molecular players and specific molecular events that underpin late stages of exocytosis in plant cells remain largely unknown. Here, by using the delivery of functional, fluorescent-tagged cellulose synthase (CESA) complexes (CSCs) to the PM as a model system for secretion, as well as single-particle tracking in living cells, we describe a quantitative approach for measuring the frequency of vesicle tethering events. Genetic and pharmacological inhibition of cytoskeletal function, reveal that the initial vesicle tethering step of exocytosis is dependent on actin and myosin XI. In contrast, treatments with the microtubule inhibitor, oryzalin, did not significantly affect vesicle tethering or fusion during CSC exocytosis but caused a minor increase in transient or aborted tethering events. With data from this new quantitative approach and improved spatiotemporal resolution of single particle events during secretion, we generate a revised model for the role of the cortical cytoskeleton in CSC trafficking.
Zhang, Weiwei↗
3-D components of a biological neural network visualized in computer generated imagery. II - Macular neural network organization
Computer-assisted reconstructions of small parts of the macular neural network show how the nerve terminals and receptive fields are organized in 3-dimensional space. This biological neural network is anatomically organized for parallel distributed processing of information. Processing appears to be more complex than in computer-based neural network, because spatiotemporal factors figure into synaptic weighting. Serial reconstruction data show anatomical arrangements which suggest that (1) assemblies of cells analyze and distribute information with inbuilt redundancy, to improve reliability; (2) feedforward/feedback loops provide the capacity for presynaptic modulation of output during processing; (3) constrained randomness in connectivities contributes to adaptability; and (4) local variations in network complexity permit differing analyses of incoming signals to take place simultaneously. The last inference suggests that there may be segregation of information flow to central stations subserving particular functions.
Ross, Muriel D.↗
Neurocomputing
The present work is intended to give technologists, research scientists, and mathematicians a graduate-level overview of the field of neurocomputing. After exploring the relationship of this field to general neuroscience, attention is given to neural network building blocks, the self-adaptation equations of learning laws, the data-transformation structures of associative networks, and the multilayer data-transformation structures of mapping networks. Also treated are the neurocomputing frontiers of spatiotemporal, stochastic, and hierarchical networks, 'neurosoftware', the creation of neural network-based computers, and neurocomputing applications in sensor processing, control, and data analysis.
Hecht-Nielsen, Robert↗
Variational multiscale reinforcement learning for discovering reduced order closure models of nonlinear spatiotemporal transport systems
Abstract A central challenge in the computational modeling and simulation of a multitude of science applications is to achieve robust and accurate closures for their coarse-grained representations due to underlying highly nonlinear multiscale interactions. These closure models are common in many nonlinear spatiotemporal systems to account for losses due to reduced order representations, including many transport phenomena in fluids. Previous data-driven closure modeling efforts have mostly focused on supervised learning approaches using high fidelity simulation data. On the other hand, reinforcement learning (RL) is a powerful yet relatively uncharted method in spatiotemporally extended systems. In this study, we put forth a modular dynamic closure modeling and discovery framework to stabilize the Galerkin projection based reduced order models that may arise in many nonlinear spatiotemporal dynamical systems with quadratic nonlinearity. However, a key element in creating a robust RL agent is to introduce a feasible reward function, which can be constituted of any difference metrics between the RL model and high fidelity simulation data. First, we introduce a multi-modal RL to discover mode-dependant closure policies that utilize the high fidelity data in rewarding our RL agent. We then formulate a variational multiscale RL (VMRL) approach to discover closure models without requiring access to the high fidelity data in designing the reward function. Specifically, our chief innovation is to leverage variational multiscale formalism to quantify the difference between modal interactions in Galerkin systems. Our results in simulating the viscous Burgers equation indicate that the proposed VMRL method leads to robust and accurate closure parameterizations, and it may potentially be used to discover scale-aware closure models for complex dynamical systems.
97 MATHEMATICS AND COMPUTING↗
Analyzing NASA Earth Observation Data with ArcGIS Technology
NASA satellite Earth Observation (EO) data are critical to a wide range of GIS research and applications. Yet the EO data are usually very complex in terms of science contents, formats, and spatiotemporal granularities, making them difficult to use for many GIS analysts. We'll show in this presentation how to easily obtain and analyze NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) EO data through ArcGIS's data/image services and Web GIS capabilities.
earth observation↗
Surface Melting Over the Greenland Ice Sheet Derived From Enhanced Resolution Passive Microwave Brightness Temperatures (1979–2019)
Surface melting is a major component of the Greenland ice sheet surface mass balance, and it affects sea level rise through direct runoff and the modulation of ice dynamics and hydrological processes, supraglacially, englacially and subglacially. Passive microwave (PMW) brightness temperature observations are of paramount importance in studying the spatial and temporal evolution of surface melting due to their long temporal coverage (1979–present) and high temporal resolution (daily). However, a major limitation of PMW datasets has been the relatively coarse spatial resolution, which has historically been of the order of tens of kilometers. Here, we use a newly released PMW dataset (37 GHz, horizontal polarization) made available through a NASA “Making Earth System Data Records for Use in Research Environments” (MeASUREs) program to study the spatiotemporal evolution of surface melting over the Greenland ice sheet at an enhanced spatial resolution of 3.125 km. We assess the outputs of different detection algorithms using data collected by automatic weather stations (AWSs) and the outputs of the Modèle Atmosphérique Régional (MAR) regional climate model. We found that sporadic melting is well captured using a dynamic algorithm based on the outputs of the Microwave Emission Model of Layered Snowpack (MEMLS), whereas a fixed threshold of 245 K is capable of detecting persistent melt. Our results indicate that, during the reference period from 1979 to 2019 (from 1988 to 2019), surface melting over the ice sheet increased in terms of both duration, up to 4.5 (2.9) d per decade, and extension, up to 6.9 % (3.6 %) of the entire ice sheet surface extent per decade, according to the MEMLS algorithm. Furthermore, the melting season started up to 4.0 (2.5) d earlier and ended 7.0 (3.9) d later per decade. We also explored the information content of the enhanced-resolution dataset with respect to the one at 25 km and MAR outputs using a semi-variogram approach. We found that the enhanced product is more sensitive to local-scale processes, thereby confirming the potential of this new enhanced product for monitoring surface melting over Greenland at a higher spatial resolution than the historical products and for monitoring its impact on sea level rise. This offers the opportunity to improve our understanding of the processes driving melting, to validate modeled melt extent at high resolution and, potentially, to assimilate these data in climate models.
Surface melting↗