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NASA NTRSDate not supplied

Towards Physics Guided Optical Flow for Tracking Atmospheric Motion

Observations of atmospheric 3D winds are critical for improving short-range and long-range forecasting. Such advancement in forecasting directly applies to research in a number of areas including convective processes, wildfire plumes and tornado prediction. Atmospheric Motion Vectors (AMVs) provide a passively sensed approach to quantifying horizontal motion and cloud heights, which are typically sourced from geostationary sensors due to the availability of high frequency observations. Recent work has shown that estimating AMVs by tracking individual pixels with dense optical flow is a promising new direction. In this work, we compare state-of-the-art convolutional neural networks for optical flow in a physics-guided deep learning framework for predicting AMVs. The approach is semi-supervised and uses physically informed wind vectors from high-resolution numerical simulations for supervised learning followed by fine-tuning though warping and reconstruction of full-disk geostationary images (GOES-16). In the vertical direction, we use labels from the CALIPSO low-earth orbit satellite to predict cloud height from 16-band geostationary images with a neural network. We present results for both tasks on held-out time periods and secondary datasets.

Geostationary↗
NASA NTRSDate not supplied

Algorithmic Classification of Raman Spectra Biosignatures: Improving Life Detection Confidence

“Agnostic” biosignatures – indicators of life (or the absence of life), independent of a particular biochemistry – are increasingly considered a high standard for life detection. The Ladder of Life Detection (2018) called for investigating how combinations of independent and different potential biosignatures affect confidence. To address this gap, statistical classification of elemental abundances, isotopic fractionation, and reflectance spectroscopy (VNIR) has been implemented. Raman spectroscopy, highly desirable due to its wide availability, has the potential to improve this predictive power. This work implemented biosignature classification algorithms on Raman data alone, in preparation for combination with the other data types. Raman spectroscopy data was collected from published databases and papers as part of a manually curated dataset of “indicative” and “non-indicative of life” samples. These currently include 61 non-indicative samples (meteorites, magnetite); 3 indicative living samples (bacteria); 20 indicative non-living samples (chalk, bone); and 12 indicative mixed (with non-indicative material) samples (soil, microbial mats). Laboratory work is ongoing to characterize additional samples, particularly a greater breadth of mixed systems. Spectra were interpolated, filtered with the Savitzsky-Golay filter, and de-noised. For a preliminary examination, agnostic features were manually extracted including mean intensity, number of peaks, and mean peak width. Different peak prominences and filtering polynomials were used to refine features. Classification algorithms were implemented: k-nearest neighbors (KNN), logistic regression (LR), linear support vector machines (SVM), random forest (RF), Gaussian naïve bayes (GNB). Lastly, Monte Carlo simulations on 1,000 50%-train-test-splits were used to validate classification performance and feature significance. The preliminary feature set achieved its highest AUC of 0.52 with LR, with no strongly discriminatory features. Work to improve feature extraction, such as through deep learning with back propagation, is planned. In future work, the Raman data will be combined with the other data types, and potentially new data types such as enantiomeric excess. This project was partially supported through the NASA Ames Project EXcellence (APEX) incubator program.

Astrobiology↗
NASA NTRS2021

Predicting the Functional State of Protein Kinases Using Interpretable Graph Neural Networks

Kinases are a family of proteins that function as molecular switches, regulating several essential cellular activities such as cell proliferation. Dysfunctional kinases are implicated in several types of cancers and hence they are actively pursued as drug targets. Given the vast number of complex kinase structures that are available in the protein data bank (PDB), there is a necessity to develop methodologies that can identify structurally important moieties of the kinases in an automated fashion, for such techniques can be instrumental in identifying novel drug targets. In this work, we develop a graph neural network (GNN) based deep learning framework for classifying the functionally active and inactive states of a large set of eukaryotic protein kinases, making use of their 3D structure from the PDB. We show that GNN based machine learning models can classify protein states with an accuracy greater than 97%. We further use the GNN models to automatically identify regions of the kinases that are important for its function. For this purpose, Gradient-weighted Class Activation Mapping (Grad-CAM) was implemented on the protein graphs. Remarkably, Grad-CAM consistently identifies the highly conserved DFG motif as the most important part of the protein across the entire kinome, without any prior input. Other regions of the hydrophobic core such as the HRD motif were also identified by the interpretable GNN framework, consistent with the literature. We discuss the significance of each of these regions in detail.

Ashwin Ravichandran↗
NASA NTRS2021

AI for Space and Aerospace

Explore the source record for details and available documents.

Artificial Intelligence, Machine Learning, Deep Le↗
NASA NTRS2021

Contextual Segmentation of Fire Spotting Regions Through Satellite-Augmented Autonomous Modular Sensor Image

Globally, forest fires remain a significant threat to human and environmental wellbeing. Towards mitigating the impacts of forest fires, it is critical that accurate and updated information regarding not only the fire line, but also nearby human settlements, vegetation, and water sources is reported quickly to emergency services. However, while existing UAS-based fire detection methods are effective, they largely do not report the contextual environmental information necessary to best serve nearby communities in disaster response. Additionally, modern advancements in deep learning offer new approaches for image segmentation which may improve classification accuracy beyond current pixel-wise indices. In this work, we benchmark the performance of these modern segmentation techniques in locating both fire lines and environmental features in historical Autonomous Modular Sensor imagery. Furthermore, we augment these outputs with satellite imagery segmentation towards developing a robust contextual mapping tool for rapid emergency fire response and decision making.

Nikhil Behari↗
NASA NTRSDate not supplied

Language Model For Earth Science: Exploring Potential Downstream Applications As Well As Current Challenges

The use of deep learning techniques to build transformer language models such as SciBERT and GPT3 have transformed the natural language technology (NLT) landscape. These new NLTs are being used in speech to text and vice versa, auto-mated text classification, sentiment analysis, topic modeling, text summarization, and cognitive assistants. While Earth science has no shortage of unstructured data such as journal and conference papers, little efforts have focused on harnessing NLTs for knowledge extraction and supporting the scientific process. This paper surveys the use of language models in different science. BERT-E, a new Earth science-specific language model, is presented. BERT-E is generated using a transfer learning solution. A language model that has already been trained for general Science (SciBERT) is fine-tuned using abstracts and full text extracted from various Earth science-related articles. A downstream keywords classification application is used for evaluation, and the use of BERT-E shows improved performance. The need to develop a robust set of benchmarks in evaluating the language model such as BERT-E is discussed. Finally, example applications are presented to inspire additional ideas for applications using domain-specific language models.

R Ramachandran↗
NASA NTRS2021

Dynamic fire and smoke detection and classification for flashover prediction

Flashover is a dangerous phenomenon caused by near-simultaneous ignition of exposed materials. It is one of the major causes of firefighter fatalities. Research has been done using CMOS vision cameras combined with thermal sensors to perform remote detection and dynamic classification of fire and smoke patterns. Tests and experiments have been done to detect fire and smoke remotely. The inexpensive visible and infrared sensors used in the tests corroborate and closely follow the detailed trends recorded by the more expensive (and less mobile) radiometers and thermocouples. Deep neural networks (DNN) have been used to detect, classify and track fire and smoke areas. Real-time segmentation is utilized to measure the fire and smoke boundaries. The segmentations are used to dynamically monitor fluctuations in temperature, fire size and smoke progression in the monitored areas. A fire and smoke progression curve has been drawn to predict the flashover point. In the paper, data analysis and preliminary results will be shown. Keywords: Flashover, fire, smoke, deep learning, visible and infrared vision

Chow, Edward↗
NASA NTRSDate not supplied

Unlocking the Mysteries of the Moon’s Shadowed Regions

The Moon poles host large quantities of water-ice deposits in the permanently shadowed regions (PSRs), which are vital for enabling sustainable human space exploration, making these regions high-priority targets for upcoming Artemis missions [1]. Unfortunately, today, the best available orbital lunar imagery [2, 3] lacks the meter-scale resolution and signal needed to understand the geomorphology and trafficability of PSRs, complicating the planning and execution of future missions seeking to explore PSRs. We have developed an image enhancement tool called HORUS (Hyper-effective nOise Removal Unet Software) [4, 5], designed to enhance LRO Narrow-Angle Camera (NAC) optical low-light imagery of permanently shadowed regions by effectively removing the CCD-related, photon, and other residual noises that corrupt the images. The tool is composed of two deep learning neural networks trained on environmental metadata and real and synthetic imagery, the latter generated by a physical noise model (LROC). We demonstrated that HORUS effectively produces low-noise, high-resolution images (~1.5m/px), achieving a 5 to 10x improvement over existing long-exposure images of PSRs. HORUS allows scientists and engineers to identify geomorphic features (e.g., craters and boulders) in shadowed regions as small as 3 meters across as well as to peek inside of small shadowed regions, for the first time. The tool was deployed and thoroughly validated for NASA's VIPER mission [6], where it was applied to 20 candidate target regions across the lunar South Pole. Additionally, we conducted different approaches to validate the resulting HORUS-processed images. With HORUS denoised images, VIPER scientists can increase their confidence on what surface features (previously unseen) exist in the shadowed regions, helping them plan rover traverses more safely and efficiently (e.g., Fig. 1) In this manuscript, we will describe how VIPER scientists are utilizing HORUS denoised images to extract new information from the terrain and increase their confidence in what surface features exist in the shadowed regions. In combination with other high-resolution images and digital elevation maps, HORUS images are helping the team analyze potential lading and science sites, as well as planning traverses more safely and efficiently (e.g., Fig. 1). Additionally, we will describe how HORUS tool unlocks a broad range of scientific and exploration applications to other Artemis and CPLS missions to the lunar poles, including (but not limited to) geomorphic analysis, change detection, surface hazard detection, and terrain relative navigation.

artificial intelligence↗
NASA NTRSDate not supplied

Capturing Complex Multivariate Time Series Interactions to Detect High-Risk Adverse Events During Flight

The reduction of aviation safety metrics below target thresholds continue to drive down the number of aviation fatalities and accidents. To meet future safety demands, sustained efforts by aviation agencies promoting safety assurance processes and systems have prompted ongoing research on identifying and mitigating in-flight risks. With the projected increase in passenger load factor and rollout of more autonomous systems into the national airspace, the need to detect high-risk events in-time or ahead-of-time is becoming increasingly crucial. New anomaly detection and precursor identification algorithms will need to scale to different airframes, levels of autonomy, and system complexity. While the pervasiveness of deep learning has resulted in the development of performant anomaly detection methods, these sophisticated models currently suffer from low end-user interpretability. Building off our previous work on identifying adverse events in multivariate flight data during descent, we propose a data-driven approach for detecting in-flight adverse events caused by the complex interplay of flight variables. Our approach utilizes ordinal patterns of important aircraft stability variables (e.g., airspeed and descent rate) to capture multivariate flight dynamics that can be used to predict the onset of unstable approaches, a high-risk adverse event that can occur during approach. Through the use of ordinal patterns, we aim to create more interpretable detection models of in-flight adverse events that can be translated to future autonomous systems without difficulty. Our analysis shows the presence of distinct ordinal pattern distributions that can be used to predict unstable approaches 1 minute ahead of time with an accuracy of 0.69 and a recall of 0.73 and 30 seconds ahead with an accuracy of 0.70 and a recall of 0.86.

Risk detection↗
NASA NTRSDate not supplied

Capturing Multivariate Time Series Interactions to Detect High‑Risk Instability During Approach

The reduction of aviation safety metrics below target thresholds continue to drive down the number of aviation fatalities and accidents. To meet future safety demands, sustained efforts by aviation agencies promoting safety assurance processes and systems have prompted ongoing research on identifying and mitigating in-flight risks. With the projected increase in passenger load factor and rollout of more autonomous systems into the national airspace, the need to detect high-risk events in-time or ahead-of-time is becoming increasingly crucial. New anomaly detection and precursor identification algorithms will need to scale to different airframes, levels of autonomy, and system complexity. While the pervasiveness of deep learning has resulted in the development of performant anomaly detection methods, these sophisticated models currently suffer from low end-user interpretability. Building off our previous work on identifying adverse events in multivariate flight data during descent, we propose a data-driven approach for detecting in-flight adverse events caused by the complex interplay of flight variables. Our approach utilizes ordinal patterns of important aircraft stability variables (e.g., airspeed and descent rate) to capture multivariate flight dynamics that can be used to predict the onset of unstable approaches, a high-risk adverse event that can occur during approach. Through the use of ordinal patterns, we aim to create more interpretable detection models of in-flight adverse events that can be translated to future autonomous systems without difficulty. Our analysis shows the presence of distinct ordinal pattern distributions that can be used to predict unstable approaches 1 minute ahead of time with an accuracy of 0.69 and a recall of 0.73 and 30 seconds ahead with an accuracy of 0.70 and a recall of 0.86.

Risk detection↗
NASA NTRS2022

Virtual Assistant for First Responders Using Natural Language Understanding and Optical Character Recognition

Commercial deep learning capabilities are available for many applications such as computer vision processing and intelligent chat bots. The Google Cloud Platform product Google Dialogflow provides lifelike conversational artificial intelligence (AI) using machine learning (ML) to generate natural conversations between computers and humans. This ML utilizes natural language understanding (NLU) to recognize a user’s intent and extracts key information into a form of entities. We have developed a user-friendly application through understanding the hazardous material database, first aid safety guidelines and observing the process of first responders who access this information in the field. We created the Trusted and Explainable Artificial Intelligence for Saving Lives (TruePAL) virtual assistant using Dialogflow1 and TensorFlow2 paired with EasyOCR.3 The chatbot supports first responders by providing voice interaction which helps limit additional steps such as browsing through multiple categories when searching for information. Using feedback from our field interviews, the voice interface has been developed to enable the first responder to focus on the immediate emergency. With less distractions, the first responder is able to engage the incident more effectively. The partial hands-free TruePAL chatbot assistant improves the accessibility to the correct guidance by an average of 1.9 seconds compared to the widely used application, NIH WISER, which requires full attention to operate. We combined this intelligent chatbot with a separate visual processing capability to produce hazardous signage analysis and generate the proper guidance for first responders. With the evolving functionality of AI tools, the use of virtual assistants in first responder technology will be an advancement, benefiting the safety of both first responders and civilians.

Chow, Edward↗
NASA NTRSDate not supplied

The Porous Microstructure Analysis (PuMA) software

The open-source Porous Microstructure Analysis (PuMA) software was implemented to offer an efficient framework for determining material characteristics from 3D microstructures. Its development was inspired by progress in X-ray microtomography, an imaging technology that captures the internal structure of materials in 3D, and even in a 4D temporal context. Over recent years, this method has transformed the domain of materials science due to its capability to non-destructively examine material microstructures while presenting digital data about their geometrical details. It has provided insights into materials relevant to several NASA missions, including heatshields, parachute fabrics, meteorites, and other advanced composites. PuMA, in its current version 3, delivers an array of features, spanning from basic geometric insights of a microstructure to intricate anisotropic thermo-elastic and chemical behavior. Specifically, the software evaluates morphological attributes (specific surface area, volume fractions, mean intercept lengths, orientation) and physical characteristics (conductivity, elasticity, permeability, and tortuosity). Additionally, it can model material degradation processes, such as oxidation and surface chemistry interactions. The software can generate synthetic microstructures, from straightforward geometrical designs to intricate woven and non-woven geometries. Coupling material generation and characterization enable parametric studies and sensitivity analysis to optimize the microstructural performance and inform design decisions and reliability assessment based on uncertainty quantification. A recent addition to PuMA includes the TomoSAM plugin, devised to incorporate the cutting-edge Segment Anything Model (SAM). SAM is a promptable deep learning model that can identify objects and create image masks in a zero-shot manner, based only on a few user clicks. The synergy between these tools aids in the segmentation of complex 3D datasets from tomography or other imaging techniques, which would otherwise require a laborious manual segmentation process.

Tomography↗
NASA NTRSDate not supplied

Multi-Scale Thermo-Mechanical Modeling of Porous 3D Woven TPS Materials

This work summarizes the process to compute and analyze the thermal conductivity and mechanical properties of 3D woven TPS materials such as 3MDCP (3D Mid-Density Carbon-Phenolic). The PuMA [1,2] software, developed at NASA Ames, was used to characterize different 3MDCP samples from their constituents' data, averaging their thermal conductivity and elastic properties in the three main directions to obtain their effective orthotropic thermo-mechanical properties. This was performed in multiple steps: firstly, TPS samples were digitally reconstructed using micro computed tomography (µCT) and their constituents were segmented; then, the porous matrix phase was analyzed at the micro-scale and these results were used, along with the fibers’ constituents information, to model the tows at the meso-scale; finally, results from the constituents were homogenized and used to model the thermo-mechanical behavior of the unit cell at the macro-scale. Additionally, to gain a better understanding of the tows’ morphology and distribution of the carbon-phenolic blended fibers, microscopy images of the tows’ cross-section were segmented using deep learning techniques and analyzed with PuMA. This workflow can be applied to any TPS material to computationally obtain its thermo-mechanical properties, enabling more informed TPS design and manufacturing choices.

Multi-Scale↗
NASA NTRSDate not supplied

Multiclass Flight Anomaly Detection Using Sensor Fusion Based on Dempster-Shafer Theory

As aviation systems in commercial operations continue to grow in complexity, the anomalies exhibited by these systems become more elaborate and difficult to detect. To address the challenge of detecting these complex anomalies, deep learning models have been used extensively in aviation anomaly detection studies, at the expense of end-user interpretability. Aiming to maintain the same level of interpretability as traditional threshold-exceedance methods, we continue our development of prediction models using ordinal patterns and their distributions throughout the flight. Specifically, this study extends our work into multiclass anomaly detection using sensor fusion based on Dempster-Shafer theory (DST), a second-order probability theory used to combine information from different sources of evidence. Our approach uses DST to reduce the uncertainty in the class predictions of an ensemble of classifiers. These classifiers rely on the similarity between flight data and class templates to make a prediction of the state of the aircraft. Our approach aims to take advantage of simple models trained on interpretable features (ordinal patterns) to correctly predict an anomaly and identify the flight dynamics linked to the anomaly. Our results show an improvement when using DST-based sensor fusion over simple majority voting. Additionally, our results provide insight into aircraft states linked to rare high-risk anomalies.

Risk detection↗
NASA NTRSDate not supplied

Multi-Scale Thermo-Mechanical Modeling of Porous 3D Woven TPS Materials

This work summarizes the process to compute and analyze the thermal conductivity and mechanical properties of 3D woven TPS materials such as 3MDCP (3D Mid-Density Carbon-Phenolic). The PuMA software, developed at NASA Ames, was used to characterize different 3MDCP samples from their constituents' data, averaging their thermal conductivity and elastic properties in the three main directions to obtain their effective orthotropic thermo-mechanical properties. This was performed in multiple steps: firstly, TPS samples were digitally reconstructed using micro computed tomography (µCT) and their constituents were segmented; then, the porous matrix phase was analyzed at the micro-scale and these results were used, along with the fibers’ constituents information, to model the tows at the meso-scale; finally, results from the constituents were homogenized and used to model the thermo-mechanical behavior of the unit cell at the macro-scale. Additionally, to gain a better understanding of the tows’ morphology and distribution of the carbon-phenolic blended fibers, microscopy images of the tows’ cross-section were segmented using deep learning techniques and analyzed with PuMA. This workflow can be applied to any TPS material to computationally obtain its thermo-mechanical properties, enabling more informed TPS design and manufacturing choices.

Multi-Scale↗
NASA NTRSDate not supplied

The Porous Microstructure Analysis (PuMA) software

The open-source Porous Microstructure Analysis (PuMA) software was created to offer an efficient framework for determining material properties from 3D microstructures. Its development was inspired by progress in X-ray microtomography, an imaging technology that captures the internal structure of materials in 3D, and even in a 4D temporal context. Over recent years, this method has transformed the domain of materials science due to its capability to non-destructively examine material microstructures while presenting digital data about their geometrical details. It has provided insights into materials relevant to several NASA missions, including heatshields, parachute fabrics, meteorites, and other advanced composites. PuMA, in its current version 3, delivers an array of features, spanning from basic geometric insights of a microstructure to intricate anisotropic thermo-elastic and chemical behavior. Specifically, the software evaluates morphological attributes (specific surface area, volume fractions, mean intercept lengths, orientation) and physical characteristics (conductivity, elasticity, permeability, and tortuosity). Additionally, it can model material degradation processes, such as oxidation and surface chemistry interactions. The software can generate synthetic microstructures, from straightforward geometrical designs to intricate woven and non-woven geometries. Coupling material generation and characterization enables parametric studies and sensitivity analysis to optimize the microstructural performance and inform design decisions and reliability assessment based on uncertainty quantification. A recent addition to PuMA includes the TomoSAM plugin, devised to incorporate the cutting-edge Segment Anything Model (SAM) into our image segmentation workflow. SAM is a promptable deep learning model that can identify objects and create image masks in a zero-shot manner, based only on a few user clicks. The synergy between these tools aids in the segmentation of complex 3D datasets from tomography and other imaging techniques, which would otherwise require a laborious manual segmentation process.

Tomography↗
NASA NTRSDate not supplied

Multiclass Flight Anomaly Detection Using Sensor Fusion Based on Dempster-Shafer Theory

As aviation systems in commercial operations continue to grow in complexity, the anomalies exhibited by these systems become more elaborate and difficult to detect. To address the challenge of detecting these complex anomalies, deep learning models have been used extensively in aviation anomaly detection studies, at the expense of end-user interpretability. Aiming to maintain the same level of interpretability as traditional threshold-exceedance methods, we continue our development of prediction models using ordinal patterns and their distributions throughout the flight. Specifically, this study extends our work into multiclass anomaly detection using sensor fusion based on Dempster-Shafer theory (DST), a second-order probability theory used to combine information from different sources of evidence. Our approach uses DST toreduce the uncertainty in the class predictions of an ensemble of classifiers. These classifiers rely on the similarity between flight data and class templates to make a prediction of the state of the aircraft. Our approach aims to take advantage of simple models trained on interpretable features (ordinal patterns) to correctly predict an anomaly and identify the flight dynamics linked to the anomaly. Our results show an improvement when using DST-based sensor fusion over simple majority voting. Additionally, our results provide insight into aircraft states linked to rare high-risk anomalies.

Risk detection↗
NASA NTRSDate not supplied

Recent Developments to the Porous Microstructure Analysis (PuMA) Software

Introduction The Porous Microstructure Analysis (PuMA) software is an open source framework for image-based simulation, primarily used to determine effective properties based on material microstructure. PuMA was originally developed for the study of NASA thermal protection materials; however, many of the solvers in PuMA have applicability to a broad range of materials science applications. PuMA version 3.2 computes material surface area, pore diameters, effective thermal conductivity, continuum and rarefied tortuosity, and permeability. For anisotropic materials, PuMA can estimate material orientation and compute anisotropic thermal conductivity and elasticity. In this talk, a brief overview of the PuMA software and underlying methods will be presented, as well as some recent and ongoing developments, including the use of immersed boundary methods for image-based simulation and the development of a new weave segmentation tool, called TomoSAM. Cut-Cell method for heat and mass transfer For simulations on complex microstructures, traditional unstructured meshing techniques often prove to be difficult and time-intensive. Voxel-based solvers, which represent the surface as a staircase structure, are relatively simple to implement but can lose accuracy when feature resolution is poor. In this work, we present a novel 3D cut-cell method for solving the variable coefficient Poisson equation on complex microstructures, suitable for the determination of effective thermal conductivity or tortuosity of a material. The method uses a Marching Cubes/Marching Squares surface reconstruction to create cut-cells and determine geometric quantities. A flux-correction method is extended to 3D, with least squares gradient reconstruction, to solve for the boundary fluxes in the cut-cells. Verification cases show the solver achieves globally 2nd order accuracy on complex microstructures. TomoSAM TomoSAM, a module of the PuMA software, has been developed as a plugin for 3D Slicer, a software platform used for 3D image processing and visualization. It utilizes the Segment Anything Model (SAM), a deep learning model capable of identifying objects and generating image masks based on minimal user input. This feature enables efficient segmentation of complex 3D datasets, particularly of woven materials, from tomography or similar imaging methods, reducing the need for manual segmentation.

Tomography↗