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At least 253 records · Page 14

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DOE OSTI2020

Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET

To further understand the transcriptome, new tools capable of measuring folding, interactions, and localization of RNA are needed. Although Förster resonance energy transfer (FRET) is an angle- and distance-dependent phenomenon, the majority of FRET measurements have been used to report distances, by assuming rotationally averaged donor–acceptor pairs. Angle-dependent FRET measurements have proven challenging for nucleic acids due to the difficulties in incorporating fluorophores rigidly into local substructures in a biocompatible manner. Fluorescence turn-on RNA aptamers are genetically encodable tags that appear to rigidly confine their cognate fluorophores, and thus have the potential to report angular-resolved FRET. In this work, we use the fluorescent aptamers Broccoli and Mango-III as donor and acceptor, respectively, to measure the angular dependence of FRET. Joining the two fluorescent aptamers by a helix of variable length allowed systematic rotation of the acceptor fluorophore relative to the donor. FRET oscillated in a sinusoidal manner as a function of helix length, consistent with simulated data generated from models of oriented fluorophores separated by an inflexible helix. Analysis of the orientation dependence of FRET allowed us to demonstrate structural rigidification of the NiCo riboswitch upon transition metal-ion binding. This application of fluorescence turn-on aptamers opens the way to improved structural interpretation of ensemble and single-molecule FRET measurements of RNA.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Recent Advances in Machine Learning for Fiber Optic Sensor Applications

Over the last three decades, fiber optic sensors (FOS) have gained a lot of attention for their wide range of monitoring applications across many industries, including aerospace, defense, security, civil engineering, and energy. FOS technologies hold great promise to form the backbone for next‐generation intelligent sensing platforms that offer long‐distance, high‐accuracy, distributed measurement capabilities and multiparametric monitoring with resilience to harsh environmental conditions. The major limitations posed by FOS are 1) cross‐sensitivity, 2) enormous volume and large data generation, 3) low data processing speed, 4) degradation of signal‐to‐noise ratio over the fiber length, and 5) overall cost of sensor and interrogator systems. These challenges can be overcome by building advanced data analytics engines enabled by recent breakthroughs in machine learning (ML) and artificial intelligence (AI). This article presents a comprehensive review of recent studies that integrate ML and AI algorithms with FOS technologies. This review also highlights several FOS technology development directions that promise a significant impact on widespread use for several industrial applications, with an emphasis on energy systems monitoring. A perspective on future directions for further research development is also provided.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Innovative Method for Reliable Measurement of PEM Water Electrolyzer Component Resistances

Understanding the sheet resistance of porous electrodes is essential for improving the performance of polymer electrolyte membrane (PEM) water electrolyzers and related technologies. Despite its importance, existing methods often fail to provide reliable and comprehensive data, especially for porous materials with complex morphologies and non‐uniform thicknesses. This study introduces a robust and straightforward method for determining the sheet resistance of porous electrodes using a novel probe concept based on industrial printed circuit board (PCB) technology. This probe measures resistance across ten distances, ranging from 250 µm to 2500 µm, enabling local mapping of resistance. The study focuses on the sheet resistance of key components in PEM water electrolyzers, including the gas diffusion layer (GDL), porous transport layer (PTL), and catalyst layers deposited on a membrane. Additionally, an image‐processing‐based method is presented to obtain the thickness distribution of the studied catalyst layers, facilitating a detailed analysis of the electrical in‐plane resistivity with thickness variations. Overall, this methodology has the potential to expedite material integration and bridge the gap between electrode engineering and single‐cell testing, thereby advancing the development of PEM water electrolyzers.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

An international study on THM modelling of the full-scale heater experiment at Mont Terri laboratory

We present results from an international model comparison study of the Full-Scale Emplacement (FE) experiment in Opalinus Clay at the Mont Terri Laboratory, Switzerland. Based on a provided parameter set the teams decided which parameters they adopted for their models, whether they considered the excavation and the ventilation phase in addition to the heating phase and if they included technical features like the shotcrete or the EDZ. The teams were able to reproduce the measured parameters temperature, relative humidity and pore pressure. The modelled results for temperature agree very closely between the teams especially in the sensors in Opalinus Clay. All teams were able to reproduce the redistribution of water in the bentonite backfill due to heating. The evolution of the relative humidity showed similar trends with differences in the intensity of the dry out effect. To model the pore pressure evolution is more complex because it comprises the full interaction of the coupled THM processes. The spread between the pore pressure modelled by the teams was larger, with some teams overestimating the pressure increase due to heating and some teams overestimating the extent of drainage. The agreement of modelled results with measurements improves with larger distance to the heater. We conclude that the EDZ and the shotcrete potentially influence the behaviour of the rock causing higher differences closer to the heater. Further research is needed to better implement those influences into the models. Based on the calibrated models, the future evolution of temperature, relative humidity and pore pressure was predicted over the next 10 years following a change of the heat power applied in 2023 and 2024. Again, the predicted temperatures agree very closely between the teams. Most teams do not expect an increase in relative humidity during the next 10 years after the initial dry-out.

58 GEOSCIENCES↗

DOE OSTI2025

Determining the Conformation of Supported Complexes Using an 17 O TEDOR-like NMR Experiment

Dynamic nuclear polarization surface-enhanced nuclear magnetic resonance (NMR) spectroscopy has enabled the determination of the three-dimensional configuration of surface sites, in particular supported metal complexes of relevance to single-site heterogeneous catalysis. These approaches have chiefly leveraged the application of NMR double-resonance experiments that either reveal the complex conformation via point-to-point intramolecular distances between spin-labeled atoms or the complex-surface orientation via distances between the spins and the surface plane. Either method typically requires expensive isotope labeling and each reports on different structural features. The application of an experiment that simultaneously reveals both types of distances with chemical resolution would be ideal. Here, in this article, we describe an 17 O{ 1 H} pseudo-3D correlation experiment that achieves this goal. Specifically, Si–O–Si and Si–O–M oxygens are well-resolved by 17 O NMR; therefore, distances can be simultaneously measured radially, between Si– 17 O–M and the 1 H’s of the ligands, and vertically to the Si– 17 O–Si linkages of the silica support. We demonstrate the experiment using supported yttrium and zirconium complexes. Good agreement is obtained when comparing the experimental results to theoretical predictions from density functional theory calculations, highlighting the reliability of this relatively simple experiment.

alkyls↗

DOE OSTI2021

Structural and spectroscopic characterization of an einsteinium complex

The transplutonium elements (atomic numbers 95–103) are a group of metals that lie at the edge of the periodic table. As a result, the patterns and trends used to predict and control the physics and chemistry for transition metals, main-group elements and lanthanides are less applicable to transplutonium elements. Furthermore, understanding the properties of these heavy elements has been restricted by their scarcity and radioactivity. This is especially true for einsteinium (Es), the heaviest element on the periodic table that can currently be generated in quantities sufficient to enable classical macroscale studies. Here we characterize a coordination complex of einsteinium, using less than 200 nanograms of 254 Es (with half-life of 275.7(5) days), with an organic hydroxypyridinone-based chelating ligand. X-ray absorption spectroscopic and structural studies are used to determine the energy of the L 3 -edge and a bond distance of einsteinium. Photophysical measurements show antenna sensitization of EsIII luminescence; they also reveal a hypsochromic shift on metal complexation, which had not previously been observed in lower-atomic-number actinide elements. Here, these findings are indicative of an intermediate spin–orbit coupling scheme in which j–j coupling (whereby single-electron orbital angular momentum and spin are first coupled to form a total angular momentum, j) prevails over Russell–Saunders coupling. Together with previous actinide complexation studies, our results highlight the need to continue studying the unusual behaviour of the actinide elements, especially those that are scarce and short-lived.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Early photometric and spectroscopic observations of the extraordinarily bright INTEGRAL-detected GRB 221009A

Context. GRB 221009A, initially detected as an X-ray transient by Swift, was later revealed to have triggered the Fermi satellite about an hour earlier, marking it as a post-peak observation of the event’s emission. This GRB distinguished itself as the brightest ever recorded, presenting an unparalleled opportunity to probe the complexities of GRB physics. The unprecedented brightness, however, challenged observation efforts, as it led to the saturation of several high-energy instruments.Aims. Our study seeks to investigate the nature of the INTEGRAL-detected GRB 221009A and elucidate the environmental conditions conducive to these exceptionally powerful bursts. Moreover, we aim to understand the fundamental physics illuminated by the detection of teraelectronvolt (TeV) photons emitted by GRB 221009A.Methods. We conducted detailed analyses of early photometric and spectroscopic observations that span from the Fermi trigger through to the initial days following the prompt emission phase in order to characterize GRB 221009A’s afterglow, and we complemented these analyses with a comparative study.Results. Our findings from analyzing INTEGRAL data confirm GRB 221009A as the most energetic event observed to date. Early optical observations during the prompt phase negate the presence of bright optical emissions with internal or external shock origins. Spectroscopic analyses enabled us to measure GRB 221009A’s distance and line-of-sight properties. The afterglow’s temporal and spectral analysis suggests prolonged activity of the central engine and a transition in the circumburst medium’s density. Finally, we discuss the implications for fundamental physics of detecting photons as energetic as 18 TeV from GRB 221009A.Conclusions. Early optical observations have proven invaluable for distinguishing between the potential origins of optical emissions in GRB 221009A, underscoring their utility in GRB physics studies. However, the rarity of such data underscores the need for dedicated telescopes capable of synchronous multiwavelength observations. Additionally, our analysis suggests that the host galaxies of TeV GRBs share commonalities with those of long and short GRBs. Expanding the sample of TeV GRBs could further solidify these findings.Key words: techniques: photometric / techniques: spectroscopic / gamma-ray burst: general / gamma-ray burst: individual: GRB 221009A

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Design of target irradiation and diagnostic chamber to study ps-laser generated plasma as a source of singly charged ions for external injection into an electron beam ion source

High repetition-rate (~10 kHz) ps-lasers are becoming available on the market with reasonable cost and may offer several advantages compared to ns-lasers by generating nearly continuous beams of singly charged ions appropriate for the “slow” injection mode into the Electron Beam Ion Source (EBIS). To evaluate these advantages, we will perform studies of a ps-laser generated plasma using a laser with a pulse duration of 8 ps and energy up to 5 mJ per pulse. A vacuum chamber equipped with a 3D target positioner, a focusing lens, and a Faraday Cup has been designed and built for this study. Lens-to-target distance variations have been measured using a laser tracker over the whole range of horizontal and vertical translation for all five targets we will use. The variations were found to be within ±150 µm. This level of “target flatness” should be acceptable for our experimental conditions. Ion currents and ion pulse durations of various elements (from Al to Ta) will be measured for different target irradiation conditions (focal spot size and laser pulse energy). The results obtained will allow us to specify all parameters and geometry of a laser ion source based on a ps-laser to provide external ion injection into the relativistic heavy ion collider EBIS

43 PARTICLE ACCELERATORS↗

DOE OSTI2022

Single molecule tracking of bacterial cell surface cytochromes reveals dynamics that impact long-distance electron transport

Using a series of multiheme cytochromes, the metal-reducing bacterium Shewanella oneidensis MR-1 can perform extracellular electron transfer (EET) to respire redox-active surfaces, including minerals and electrodes outside the cell. While the role of multiheme cytochromes in transporting electrons across the cell wall is well established, these cytochromes were also recently found to facilitate long-distance (micrometer-scale) redox conduction along outer membranes and across multiple cells bridging electrodes. Recent studies proposed that long-distance conduction arises from the interplay of electron hopping and cytochrome diffusion, which allows collisions and electron exchange between cytochromes along membranes. However, the diffusive dynamics of the multiheme cytochromes have never been observed or quantified in vivo, making it difficult to assess their hypothesized contribution to the collision-exchange mechanism. Here, we use quantum dot labeling, total internal reflection fluorescence microscopy, and single-particle tracking to quantify the lateral diffusive dynamics of the outer membrane-associated decaheme cytochromes MtrC and OmcA, two key components of EET in S. oneidensis. We observe confined diffusion behavior for both quantum dot-labeled MtrC and OmcA along cell surfaces (diffusion coefficients D MtrC = 0.0192 ± 0.0018 µm 2 /s, D OmcA = 0.0125 ± 0.0024 µm 2 /s) and the membrane extensions thought to function as bacterial nanowires. We find that these dynamics can trace a path for electron transport via overlap of cytochrome trajectories, consistent with the long-distance conduction mechanism. The measured dynamics inform kinetic Monte Carlo simulations that combine direct electron hopping and redox molecule diffusion, revealing significant electron transport rates along cells and membrane nanowires.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

DESI 2024 IV: Baryon Acoustic Oscillations from the Lyman alpha forest

We present the measurement of Baryon Acoustic Oscillations (BAO) from the Lyman-α(Lyα) forest of high-redshift quasars with the first-year dataset of the Dark Energy Spectroscopic Instrument (DESI). Our analysis uses over 420 000 Lyα forest spectra and their correlation with the spatial distribution of more than 700 000 quasars. An essential facet of this work is the development of a new analysis methodology on a blinded dataset. We conducted rigorous tests using synthetic data to ensure the reliability of our methodology and findings before unblinding. Additionally, we conducted multiple data splits to assess the consistency of the results and scrutinized various analysis approaches to confirm their robustness. For a given value of the sound horizon (r d ), we measure the expansion at z eff = 2.33 with 2% precision, H(z eff ) = (239.2 ± 4.8) (147.09 Mpc /r d ) km/s/Mpc. Similarly, we present a 2.4% measurement of the transverse comoving distance to the same redshift, DM(z eff ) = (5.84 ± 0.14) (r d /147.09 Mpc) Gpc. Together with other DESI BAO measurements at lower redshifts, these results are used in a companion paper to constrain cosmological parameters.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

The completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: BAO and RSD measurements from the anisotropic power spectrum of the quasar sample between redshift 0.8 and 2.2

ABSTRACT We measure the clustering of quasars of the final data release (DR16) of eBOSS. The sample contains $343\, 708$ quasars between redshifts 0.8 ≤ z ≤ 2.2 over $4699\, \mathrm{deg}^2$. We calculate the Legendre multipoles (0,2,4) of the anisotropic power spectrum and perform a BAO and a Full-Shape (FS) analysis at the effective redshift zeff = 1.480. The errors include systematic errors that amount to 1/3 of the statistical error. The systematic errors comprise a modelling part studied using a blind N-body mock challenge and observational effects studied with approximate mocks to account for various types of redshift smearing and fibre collisions. For the BAO analysis, we measure the transverse comoving distance DM(zeff)/rdrag = 30.60 ± 0.90 and the Hubble distance DH(zeff)/rdrag = 13.34 ± 0.60. This agrees with the configuration space analysis, and the consensus yields: DM(zeff)/rdrag = 30.69 ± 0.80 and DH(zeff)/rdrag = 13.26 ± 0.55. In the FS analysis, we fit the power spectrum using a model based on Regularised Perturbation Theory, which includes redshift space distortions and the Alcock–Paczynski effect. The results are DM(zeff)/rdrag = 30.68 ± 0.90 and DH(zeff)/rdrag = 13.52 ± 0.51 and we constrain the linear growth rate of structure f(zeff)σ8(zeff) = 0.476 ± 0.047. Our results agree with the configuration space analysis. The consensus analysis of the eBOSS quasar sample yields: DM(zeff)/rdrag = 30.21 ± 0.79, DH(zeff)/rdrag = 3.23 ± 0.47, and f(zeff)σ8(zeff) = 0.462 ± 0.045 and is consistent with a flat ΛCDM cosmological model using Planck results.

Neveux, Richard↗

DOE OSTI2025

Lifetime measurements in 102 Mo interpreted in the interacting boson model and the X(5) symmetry

Lifetimes of low-lying excited states in 102 Mo populated in the two-neutron transfer reaction 100 Mo ⁢( 18 O, 16 O)⁢ 102 Mo were measured using the recoil distance Doppler shift method at the IFIN-HH Tandem accelerator. Lifetimes of the $2^+_1$, $0^+_2$, $4^+_1$, $2^+_2$, $2^+_3$, $3^+_1$, $6^+_1$, ($0^+_3$), $4^+_2$, ($3^−_1$), and ($5^−_1$) states were obtained. The deduced electromagnetic transition strengths have been compared to calculations performed in the interacting boson model framework including models representing the U(5) and X(5) symmetries. It is found that 102 Mo lies between the U(5) limit and the X(5) critical point symmetry.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Quantifying concordance of correlated cosmological data sets

We develop estimators of agreement and disagreement between correlated cosmological data sets. These account for data correlations when computing the significance of both tensions and excess confirmation while remaining statistically optimal. We discuss and thoroughly characterize different approaches commenting on the ones that have the best behavior in practical applications. We complement the calculation of their statistical distribution within the Gaussian model with one estimator that takes non-Gaussianities fully into account. To illustrate the use of our techniques, we apply these estimators to supernovae measurements of the distance-redshift relation, absolutely calibrated by the local distance ladder. The suite of best estimators that we discuss finds results that are in excellent agreement between estimators and find no indications of significant internal inconsistencies in this data set above the 1% probability threshold. Furthermore, this shows the robustness of local determinations of the Hubble constant to features in the distance-redshift relation.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Correlating confinement to topological fluctuations near the crossover transition in QCD

We show the existence of strong (anti)correlations between the topological hot spots and the local values of the trace of the Polyakov loop in 2 + 1 flavor QCD with physical quark mass, in the vicinity of the crossover transition corresponding to the simultaneous restoration of chiral symmetry and deconfinement. Using sophisticated lattice techniques, we have carefully identified the topological hot spots using quark zero modes and measured the short-distance fluctuations of the Polyakov loop about them, showing how the latter is repelled quite strongly around the peak of the zero modes. Though we could explain some aspects of these correlations within the instanton-dyon picture, our work sets the stage for a larger goal towards a systematic study of the role of different topological species that interact with the Polyakov loop, establishing the strong connection between topology and confinement.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

Topological Interpretability for Deep Learning

With the growing adoption of AI-based systems across everyday life, the need to understand their decision-making mechanisms is correspondingly increasing. The level at which we can trust the statistical inferences made from AI-based decision systems is an increasing concern, especially in high-risk systems such as criminal justice or medical diagnosis, where incorrect inferences may have tragic consequences. Despite their successes in providing solutions to problems involving real-world data, deep learning (DL) models cannot quantify the certainty of their predictions. These models are frequently quite confident, even when their solutions are incorrect. This work presents a method to infer prominent features in two DL classification models trained on clinical and non-clinical text by employing techniques from topological and geometric data analysis. We create a graph of a model's feature space and cluster the inputs into the graph's vertices by the similarity of features and prediction statistics. We then extract subgraphs demonstrating high-predictive accuracy for a given label. These subgraphs contain a wealth of information about features that the DL model has recognized as relevant to its decisions. We infer these features for a given label using a distance metric between probability measures, and demonstrate the stability of our method compared to the LIME and SHAP interpretability methods. This work establishes that we may gain insights into the decision mechanism of a DL model. This method allows us to ascertain if the model is making its decisions based on information germane to the problem or identifies extraneous patterns within the data.

Spannaus, Adam↗

DOE OSTI2021

Quantitative assessment of Distributed Acoustic Sensing at the Source Physics Experiment, Phase II

In this report, we assess the data recorded by a Distributed Acoustic Sensing (DAS) cable deployed during the Source Physics Experiment, Phase II (DAG) in comparison with the data recorded by nearby 4.5-Hz geophones. DAS is a novel recording method with unprecedented spatial resolution, but there are significant concerns around the data fidelity as the technology is ramped up to more common usage. Here we run a series of tests to quantify the similarity between DAS data and more conventional data and investigate cases where the higher spatial resolution of the DAS can provide new insights into the wavefield. These tests include 1D modeling with seismic refraction and bootstrap uncertainties, assessing the amplitude spectra with distance from the source, measuring the frequency dependent inter-station coherency, estimating time-dependent phase velocity with beamforming and semblance, and measuring the cross-correlation between the geophone and the particle velocity inferred from the DAS. In most cases, we find high similarity between the two datasets, but the higher spatial resolution of the DAS provides increased details and methods of estimating uncertainty.

47 OTHER INSTRUMENTATION↗

DOE OSTI2022

Quantitative assessment of Distributed Acoustic Sensing at the Source Physics Experiment (Phase II)

58 GEOSCIENCES↗

DOE OSTI2023

ON PROCESS STABILITY IN WAAM-CMT OF ALUMINUM ALLOYS

Wire-arc additive manufacturing (WAAM) has become a cost-efficient metal additive manufacturing process. However, depositing aluminum with WAAM is challenging due to its sensitivity to heat input (linear energy density), which can cause undesirable surface topology waviness if not controlled. Thus, a process window is needed that can produce stable geometry and deposition conditions while minimizing production times. In this study, 5183 aluminum alloy wire is used to deposit 10-layer walls with varying wire feed speeds (WFS) and traverse speeds (TS) (at a constant WFS/TS ratio) and varying interpass temperature (IPT). In-situ process data consisting of optical contact-tip-workpiece-distance (CTWD) and current/voltage measurements are collected to determine process condition stability throughout the build. Part geometry is measured using a 3D scanner and build porosity is characterized via digital X-ray. A process window is identified that produces stable surface topology and process conditions at a minimal production time.

aluminum alloy↗