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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 253 records · Page 14
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Unnatural biosynthesis by an engineered microorganism with heterologously expressed natural enzymes and an artificial metalloenzyme

Synthetic biology enables microbial hosts to produce complex molecules from organisms that are rare or difficult to cultivate, but the structures of these molecules are limited to those formed by reactions of natural enzymes. The integration of artificial metalloenzymes (ArMs) that catalyse unnatural reactions into metabolic networks could broaden the cache of molecules produced biosynthetically. Here, in this work, we report an engineered microbial cell expressing a heterologous biosynthetic pathway, containing both natural enzymes and ArMs, that produces an unnatural product with high diastereoselectivity. We engineered Escherichia coli with a heterologous terpene biosynthetic pathway and an ArM containing an iridium–porphyrin complex that was transported into the cell with a heterologous transport system. We improved the diastereoselectivity and product titre of the unnatural product by evolving the ArM and selecting the appropriate gene induction and cultivation conditions. This work shows that synthetic biology and synthetic chemistry can produce, by combining natural and artificial enzymes in whole cells, molecules that were previously inaccessible to nature.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Multiphysics modelling in PyLith: poroelasticity

SUMMARY PyLith, a community, open-source code for modelling quasi-static and dynamic crustal deformation with an emphasis on earthquake faulting, has recently been updated with a flexible multiphysics implementation. We demonstrate the versatility of the multiphysics implementation by extending the code to model fully coupled continuum poromechanics. We verify the newly incorporated physics using standard benchmarks for a porous medium saturated with a slightly compressible fluid. The benchmarks include the 1-D consolidation problem as outlined by Terzaghi, Mandel’s problem for the 2-D case, and Cryer’s problem for the 3-D case. All three benchmarks have been added to the PyLith continuous integration test suite. We compare the closed form analytical solution for each benchmark against solutions generated by our updated code, and lastly, demonstrate that the poroelastic material formulation may be used alongside the existing fault implementation in PyLith.

Geochemistry & Geophysics↗
DOE OSTI2024

DNA double-strand break movement in heterochromatin depends on the histone acetyltransferase dGcn5

Abstract Cells employ diverse strategies to repair double-strand breaks (DSBs), a dangerous form of DNA damage that threatens genome integrity. Eukaryotic nuclei consist of different chromatin environments, each displaying distinct molecular and biophysical properties that can significantly influence the DSB-repair process. DSBs arising in the compact and silenced heterochromatin domains have been found to move to the heterochromatin periphery in mouse and Drosophila to prevent aberrant recombination events. However, it is poorly understood how chromatin components, such as histone post-translational modifications, contribute to these DSB movements within heterochromatin. Using irradiation as well as locus-specific DSB induction in Drosophila tissues and cultured cells, we find enrichment of histone H3 lysine 9 acetylation (H3K9ac) at DSBs in heterochromatin but not euchromatin. We find this increase is mediated by the histone acetyltransferase dGcn5, which rapidly localizes to heterochromatic DSBs. Moreover, we demonstrate that in the absence of dGcn5, heterochromatic DSBs display impaired recruitment of the SUMO E3 ligase Nse2/Qjt and fail to relocate to the heterochromatin periphery to complete repair. In summary, our results reveal a previously unidentified role for dGcn5 and H3K9ac in heterochromatic DSB repair and underscore the importance of differential chromatin responses at heterochromatic and euchromatic DSBs to promote safe repair.

Biochemistry & Molecular Biology↗
DOE OSTI2026

Searching for axion dark matter with array-scalable single magnon detectors

We introduce an array-scalable, magnon-based detector to search for the spin-dependent interactions of electron-coupled axion dark matter with mass in the 1−100 μ⁢eV range. These axions can excite single magnons in magnetic targets, such as yttrium iron garnet (YIG) spheres, which are subsequently sensed by the detector. In our concept, this sensing is implemented by coupling the magnons in the YIG spheres to magnetic-field-resilient single-electron charge-qubits, whose state is then interrogated with a quantum nondemolition measurement. Using standard superconducting fabrication techniques, it is possible to integrate many YIG sphere-qubit sensors, forming a large detector array. We outline the detector design and operation for our concept, and determine its sensitivity to axion dark matter. We find that using available technology can already exceed the sensitivity of previous ferromagnetic haloscopes, and further improvements in performance would search for electron-coupled axion dark matter in unexplored parameter space.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

Electric polarization in inhomogeneous crystals

In this work, we derive the charge density up to second order in spatial gradient in inhomogeneous crystals using the semiclassical coarse graining procedure based on the wave packet method. It can be recast as divergence of polarization, whose first-order contribution consists of three parts, a perturbative correction to the original Berry connection expression, a topological part that can be written as an integral of the Chern-Simons 3-form, and a previously-unknown, quadrupolelike contribution. The topological part can be related to the quantized fractional charge carried by a vortex in two-dimensional systems. We then generalize our results to the multiband case and show that the quadrupolelike contribution plays an important role, as it makes the total polarization gauge-independent. Finally, we verify our theory in several model systems.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Measurement of the nucleon spin structure functions for 0.01 < 𝑄 2 < 1 GeV 2 using CLAS

The spin structure functions of the proton and the deuteron were measured during the EG4 experiment at Jefferson Lab in 2006. Data were collected for longitudinally polarized electron scattering off longitudinally polarized NH 3 and ND 3 targets, for 𝑄 2 values as small as 0.012 and 0.02 GeV 2 , respectively, using the CEBAF Large Acceptance Spectrometer. This is the archival paper of the EG4 experiment that summarizes the previously reported results of the polarized structure functions 𝑔 1 , 𝐴 1 ⁢𝐹 1 , and their moments $\bar{Γ}$ 1 , $\bar{𝛾}$ 0 , and $\bar{𝐼}$ TT , for both the proton and the deuteron. In addition, we report on new results on the neutron 𝑔 1 extracted by combining proton and deuteron data and correcting for Fermi smearing, and on the neutron moments $\bar{Γ}$ 1 , $\bar{𝛾}$ 0 , and $\bar{𝐼}$ TT formed directly from those of the proton and the deuteron. Our data are in good agreement with the Gerasimov-Drell-Hearn sum rule for the proton, deuteron, and neutron. Furthermore, the isovector combination was formed for 𝑔 1 and the Bjorken integral $\bar{Γ}^{𝑝−𝑛}_1$, and it was compared to available theoretical predictions. All of our results, to the best of our knowledge, provide for the first time extensive tests of spin observable predictions from chiral effective field theory (𝜒⁢EFT) in a 𝑄 2 range commensurate with the pion mass. Finally, they motivate further improvement in 𝜒⁢EFT calculations from other approaches such as the lattice gauge method.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Opportunities and Challenges in Metal Forming for Lightweighting: Review and Future Work

Abstract The purposes of this review are to summarize the historical progress in the last 60 years of lightweight metal forming, to analyze the state-of-the-art, and to identify future directions in the context of Cyber-physically enabled circular economy. In honoring the 100th anniversary of the establishment of the Manufacturing Engineering Division of ASME, this review paper first provides the impact of the metal forming sector on the economy and historical perspectives of metal forming research work published by the ASME Journal of Manufacturing Science and Engineering, followed by the motivations and trends in lightweighting. To achieve lightweighting, one needs to systematically consider: (1) materials and material characterization; (2) innovative forming processes; and (3) simulation tools for integrated part design and process design. A new approach for process innovation, i.e., the Performance-Constraints-Mechanism-Innovation (PCMI) framework, is proposed to systematically seek new processes. Finally, trends and challenges for the further development in circular economy are presented for future exploration.

Engineering↗
DOE OSTI2023

Visualization for Scientific Discovery, Decision-Making, and Communication

Visualization–the use of visual elements to explore data, form hypotheses, or convey conclusions–is an integral part of the scientific process. Starting from an initial exploration of new data to illustrating outcomes to the general public, visualization is one of the most intuitive and powerful modes of communication. With the explosion of new data sources and types, unprecedented volumes of data, and new technologies, such as virtual reality and AI, visualization has become increasingly essential but also ever more challenging. Department of Energy’s (DOE) Office of Advanced Scientific Computing Research (ASCR) sponsored a Basic Research Needs workshop in January 2022 to understand the major opportunities and grand challenges in visualization tools and technologies for scientific computing, with a special focus on DOE-relevant applications and goals. The workshop identified five priority research directions (PRDs) for visualization to support scientific discovery, decision-making, and communication.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Smart Packaging for Critical Energy Shipment (SPaCES)

Recent technical advances have brought forth revolutionary Smart Packaging (SP) technology. SP incorporates multiple electronics, chemical, and mechanical sensing technologies into packaging materials, and utilizes them to monitor and display package content status. SP can also employ embedded micro actuators to react to undesirable package conditions such as moisture/temperature anomalies or harmful chemical reactions and neutralize it. When further integrated with wireless sensing and secure networking, SP provides wholistic system-wide remote situation awareness capability for real-time crisis management. Finally, we also see that SP can be further integrated with 3D printing technology to offer form-factor customization and application specific solutions suitable for DOE (Department of Energy) NNSA’s (National Nuclear Security Administration) R/N (radiological/nuclear) material shipment and management needs; this has the potential to improve safety, security, and overall operation process quality. This report surveys SP technology as the state of the art (SOTA) and analyzes how it can integrate with cybersecurity and 3D printing to address NNSA’s critical R/N material shipment and storage requirements. This report further presents our FY23/24 investigation plan describing project background, goal, motivation, proposed work, and statement of work and cost.

47 OTHER INSTRUMENTATION↗
DOE OSTI2026

“Frameworks, Algorithms and Scalable Technologies for Mathematics (FASTMath) SciDAC Institute” (Final Technical Report)

SMU personnel formed a portion of the overall “Time Integration” team within the FASTMath SciDAC-5 Institute, and we interacted very closely with team members from collaborating institutions. The major goals of our team within the FASTMath institute may be categorized into two groups: the development of advanced and application-aware time integration methods and software, and close interactions with DOE application scientists to facilitate their use of these new methods and software. The two goals are intimately linked, since our research and development of novel tools is informed by the needs of our application partners, who in turn benefit from subsequent mathematical and software advances. While the SMU personnel collaborated with the rest of the Time Integration FASTMath team on most of our shared deliverables within the larger FASTMath institute, SMU personnel primarily contributed to the following subset of those goals: ● expanding capabilities for higher-order and solve-decoupled multirate methods, ● enhancing support for temporal adaptivity within multirate methods, and ● adding structure-aware time integration methods. Each of these goals focused both on intellectual contributions through journal articles or research presentations, and on enhancements to the open-source SUNDIALS library of time integrators and nonlinear solvers, of which the SMU PI Reynolds is a core developer.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Bivalent recognition of fatty acyl-CoA by a human integral membrane palmitoyltransferase

S-acylation, also known as palmitoylation, is the most abundant form of protein lipidation in humans. This reversible posttranslational modification, which targets thousands of proteins, is catalyzed by 23 members of the DHHC family of integral membrane enzymes. DHHC enzymes use fatty acyl-CoA as the ubiquitous fatty acyl donor and become autoacylated at a catalytic cysteine; this intermediate subsequently transfers the fatty acyl group to a cysteine in the target protein. Protein S-acylation intersects with almost all areas of human physiology, and several DHHC enzymes are considered as possible therapeutic targets against diseases such as cancer. These efforts would greatly benefit from a detailed understanding of the molecular basis for this crucial enzymatic reaction. Here, in this study, we combine X-ray crystallography with all-atom molecular dynamics simulations to elucidate the structure of the precatalytic complex of human DHHC20 in complex with palmitoyl CoA. The resulting structure reveals that the fatty acyl chain inserts into a hydrophobic pocket within the transmembrane spanning region of the protein, whereas the CoA headgroup is recognized by the cytosolic domain through polar and ionic interactions. Biochemical experiments corroborate the predictions from our structural model. We show, using both computational and experimental analyses, that palmitoyl CoA acts as a bivalent ligand where the interaction of the DHHC enzyme with both the fatty acyl chain and the CoA headgroup is important for catalytic chemistry to proceed. This bivalency explains how, in the presence of high concentrations of free CoA under physiological conditions, DHHC enzymes can efficiently use palmitoyl CoA as a substrate for autoacylation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Data Integration Aggregated Model For Nuclear Deployment

The data of a nuclear utility or plant are stored in various isolated forms in different systems. These data have different structures and tools and are, therefore, used independently. The integration of data sources is often needed and is performed manually and on an as-needed basis. The integration of the data would enable creating a data warehouse for a single nuclear power plant (NPP) or multiple plants. A data model contains objects that make up a given domain along with their attributes and relationships and could be used as a standard for exchange between applications for simple integration and data aggregation. After a survey of existing models, it was determined that a new model was required to meet the scope of this problem. DIAMOND has been developed in the form of an ontology to meet these needs. An ontology is simply a data model that also acts as a taxonomy for the domain, organizing the objects in a hierarchy with the most general objects at the top.

Browning, JerenM↗
DOE OSTI2021

Integrated biochar research: A roadmap

We provide the rationale and broad outline for a long-term integrated research program that focuses on biochar, a relatively persistent solid form of C produced by thermal conversion of biomass under low-oxygen conditions. We believe that investment in this integrated long-term research program would, within a decade, resolve the most important information needs with respect to the technology for biochar and bioenergy production and the agronomic and environmental impacts of biochar use. This information is critically needed by both private and governmental decision makers to ensure that deployment will yield the maximum productivity, economic, and environmental benefits. Biochar and integrated biochar-bioenergy production systems have the potential to become a robust distributed industry supporting rural economies and an important part of a broader portfolio of solutions to climate change.

09 BIOMASS FUELS↗
DOE OSTI2020

Tutorial on forming through-silicon vias

Through-silicon vias (TSVs) are a critical technology for three-dimensional integrated circuit technology. These through-substrate interconnects allow electronic devices to be stacked vertically for a broad range of applications and performance improvements such as increased bandwidth, reduced signal delay, improved power management, and smaller form-factors. There are many interdependent processing steps involved in the successful integration of TSVs. This article provides a tutorial style review of the following semiconductor fabrication process steps that are commonly used in forming TSVs: deep etching of silicon to form the via, thin film deposition to provide insulation, barrier, and seed layers, electroplating of copper for the conductive metal, and wafer thinning to reveal the TSVs. Recent work in copper electrochemical deposition is highlighted, analyzing the effect of accelerator and suppressor additives in the electrolyte to enable void-free bottom-up filling from a conformally lined seed metal.

42 ENGINEERING↗
DOE OSTI2025

Open string amplitudes: singularities, asymptotics and new representations

Open string amplitudes at tree level have been studied for over fifty years. However, there is no known analytic form for general n-point amplitudes, and their conventional representation in terms of worldsheet integrals does not make many of their most basic physical properties manifest. Recently, a formulation of these amplitudes exposing the underlying “binary geometry” via the use of “u” variables has given us many insights into their basic features. In this paper, we initiate a systematic exploration of fundamental aspects of open string amplitudes from this new point of view. We begin by finding explicit expressions for the factorization of amplitudes at general massive levels, which are seen to be determined by products of lower-point massless amplitudes with shifted kinematics. We then study the asymptotic behavior when subsets of kinematic variables become large, delineating regimes with exponential (generalized hard scattering) and power-law (generalized Regge) behavior. We also give precise expressions for the asymptotics, which reveal another example of the recently observed property of factorization away from poles. We derive new recursion relations for the amplitude, which when repeatedly applied reduce to infinite series representations with a wider domain of convergence than the usual integral representations. For the five-point case, we present a new closed-form expression for the amplitude that for the first time gives its analytic continuation to all of kinematic space. We also discuss novel relations between amplitudes at different kinematic points following from the recently observed “split” factorizations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Effect of grafting density on the two-dimensional assembly of nanoparticles

Employing grazing-incidence small-angle X-ray scattering (GISAXS) and X-ray reflectivity (XRR), we demonstrate that films composed of polyethylene glycol (PEG)-grafted silver nanoparticles (AgNPs) and gold nanoparticles (AuNPs), as well as their binary mixtures, form highly stable hexagonal structures at the vapor–liquid interface. These nanoparticles exhibit remarkable stability under varying environmental conditions, including changes in pH, mixing concentration, and PEG chain length. Short-chain PEG grafting produces dense, well-ordered films, while longer chains produce more complex, less dense quasi-bilayer structures. AuNPs exhibit higher grafting densities than AgNPs, leading to more ordered in-plane arrangements. In binary mixtures, AuNPs dominate the population at the surface, while AgNPs integrate into the system, expanding the lattice without forming a distinct binary superstructure. In conclusion, these results offer valuable insights into the structural behavior of PEG-grafted nanoparticles and provide a foundation for optimizing binary nanoparticle assemblies for advanced nanotechnology applications.

36 MATERIALS SCIENCE↗
DOE OSTI2026

Novel architectures for stabilization of Mn-rich cathodes: a high-valent approach to interfaces

Lithium- and manganese-rich (LMR) layered oxides continue to generate significant interest as promising, earth-abundant cathode materials for next-generation Li-ion batteries. In spite of their attractive capacity and cost advantages, a few long-standing challenges still hamper their widespread adoption, with manganese dissolution being one of the most persistent and vexing issues. In the present study, we explore the incorporation of Sb5+ as a high-valent cation and exploit its ability to form unique lithium-rich surface and grain-boundary structures that can integrate directly with the LMR lattice. When synthesized under appropriate conditions, Sb5+ orders strongly with Li+ to form localized Li+–Sb5+ motifs, which play a key role in restructuring the surface and grain-boundary regions. These restructured regions act as protective, stabilizing entities that substantially suppress electrolyte-driven side reactions, reduce impedance growth, limit manganese dissolution, and help retain cyclable lithium during long-term electrochemical cycling. Further improvements of the electrochemical performance of Sb-treated LMR were achieved using a well-known additive to mitigate Mn dissolution and highlight the synergistic effects of combined strategies. Overall, this work showcases how high-valent elements such as Sb5+ can help tailor the surface and intergranular regions and work in synergy with other modifiers (e.g. electrolyte additives), enhancing the cycle life and practical viability of LMR cathodes for use in graphite-based full cells.

Mallick, Subhadip [Argonne National Laboratory (AN↗
DOE OSTI2022

tapir: A tool for topologies, amplitudes, partial fraction decomposition and input for reductions

The demand for precision predictions in the field of high energy physics has dramatically increased over recent years. Experiments conducted at the LHC, as well as precision measurements at the intensity frontier such as Belle II require equally precise theoretical predictions to make full use of the acquired data. To match the experimental precision, second-, third- and, for certain quantities, even higher-order calculations in perturbative quantum field theory are required. To facilitate such calculations, computer software automating as many steps as possible is required. Yet, each calculation poses different challenges and thus, a high level of configurability is required. In this context we present tapir: a tool for identification, manipulation and minimization of Feynman integral families. It is designed to integrate in toolchains based on the computer algebra system FORM, the use of which is common practice in the field. tapir can be used to reduce the complexity of multi-loop problems with cut-filters, topology mapping, partial fraction decomposition and alike. Program Title:tapir CPC Library link to program files:https://doi.org/10.17632/ptc9t46xyn.1 Developer's repository link:https://gitlab.com/tapir-devs/tapir Licensing provisions: GPLv3 Programming language:python 3, C++ Nature of problem: Multi-loop computations require the automatization of a large number of different tasks related to Feynman integral topologies. Among them are the identification and minimization of integral topologies, partial fraction decomposition of topologies in the case of linearly dependent propagators as well as mapping scalar products of loop momenta to scalar functions. Solution method: The minimization of topologies is performed by comparison of their respective Nickel indices [1], even further minimization utilizes Pak's algorithm [2]. To efficiently map scalar products of loop momenta to scalar functions FORM [3] code is generated. Additional comments including restrictions and unusual features: Minimization based on Pak's algorithm slows down for many lines and scales. A coarser minimization using the Nickel indices, however, is still possible. [1]B. Nickel, D. Meiron, G.A.J. Baker, Compilation of 2-pt and 4-pt graphs for continuous spin model, Report, University of Guelph, 1977.[2]A. Pak, J. Phys. Conf. Ser. 368 (2012) 012049, https://doi.org/10.1088/1742-6596/368/1/012049, arXiv:1111.0868.[3]B. Ruijl, T. Ueda, J. Vermaseren, FORM version 4.2, arXiv:1707.06453, 7 2017.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗