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At least 253 records · Page 14

Poisson Log-Normal Process for Count Data Prediction

Modeling count data is important in physics and other scientific disciplines, where measurements often involve discrete, non-negative quantities such as photon or neutrino detection events. Traditional parametric approaches can be trained to generate integer-count predictions but may struggle with capturing complex, non-linear dependencies often observed in the data. Gaussian process (GP) regression provides a robust non-parametric alternative to modeling continuous data; however, it cannot generate integer outputs. We propose the Poisson Log-Normal (PoLoN) process, a framework that employs GP to model Poisson log-rates. As in GP regression, our approach relies on the correlations between data points captured via GP kernel structure rather than explicit functional parameterizations. We demonstrate that the PoLoN predictive distribution is Poisson-LogNormal and provide an algorithm for optimizing kernel hyperparameters. Furthermore, we adapt the PoLoN approach to the problem of detecting weak localized signals superimposed on a smoothly varying background - a task of considerable interest in many areas of science and engineering. Our framework allows us to predict the strength, location and width of the detected signals. We evaluate PoLoN's performance using both synthetic and real-world datasets, including the open dataset from CERN which was used to detect the Higgs boson at the Large Hadron Collider. Our results indicate that the PoLoN process can be used as a non-parametric alternative for analyzing, predicting, and extracting signals from integer-valued data.

Saha, Anushka [Rutgers U., Piscataway]↗

Understanding of a Novel Irradiation-induced Nanostructuring Process in SiC layer of TRISO fuel particles via Transmission Electron Microscopy

Metallic fission products are found to transport through the SiC layer of the tristructural isotropic (TRISO) nuclear fuel particle and various studies have been undertaken to understand the transport behavior [1, 2]. While the grain boundaries in SiC acts as a primary pathway to dissipate fission products in the form of multi-phased complex compounds, intragranular fission product precipitation has always been observed. Research on neutron irradiation damage tolerance of silicon carbide (SiC) and its composites, used in TRISO fuel, light water reactors (LWR) fuel cladding etc., has traditionally ignored the irradiation-induced “polymorphism” of SiC. In the post-irradiation advanced microscopy effort at Idaho National Laboratory, it has been recently discovered that the intragranular precipitation of fission products in SiC layer of TRISO coated fuels takes place via a dual step nucleation mechanism that involves cubic (?) ?hexagonal (?) SiC polymorphic transition, and subsequent metamorphosis of ?-SiC into fission product precipitates, as shown in Figure 1 [3]. This precipitation behavior cannot be explained by any reported nucleation mechanism. The extent of this precipitation has been observed to be influenced by the nature of the neutron irradiation induced damage structures. These damage structures (e.g., defect morphology and density) are also indicative of the irradiation temperature and neutron fluence levels experimented by the individual TRISO particles. The distinction of neutron irradiation damage structures as a function of the fuel kernel type, burn up level and fabrication histories of TRISO coated particles from the Advanced Gas reactor (AGR-1 and AGR-2) experiments has been examined and compared. This discovery not only adds new fundamental understanding of physical behavior of polymorphic ceramics under irradiation, but also provides the following beneficial traits for high temperature applications. 1) Since the extent of precipitation of the desired phase is directly dependent on the amount of precursor phase, the volume fraction of desired phase can be easily controlled by irradiation parameters. This eliminates the conventional limitation of volume fraction of a desired phase in the system as outlined by the phase diagram of the specific system. 2) Most of the precipitate-strengthened materials for high temperature applications suffer from degradation of size and shape of precipitate upon prolonged thermal exposures. But, precipitates are confined to the shape and size of the morphological template of surrogate phase (e.g. a Pd silicide precipitate is confined by the ?-SiC as shown in Figure 1(c)) in the present nucleation pathway. Hence, there is no possibility of desired phase to undergo any morphological degradation at high temperature that eventually will extend the lifetime of these materials at high temperature.

42 ENGINEERING↗

On the parameter combinations that matter and on those that do not: data-driven studies of parameter (non)identifiability

Abstract We present a data-driven approach to characterizing nonidentifiability of a model’s parameters and illustrate it through dynamic as well as steady kinetic models. By employing Diffusion Maps and their extensions, we discover the minimal combinations of parameters required to characterize the output behavior of a chemical system: a set of effective parameters for the model. Furthermore, we introduce and use a Conformal Autoencoder Neural Network technique, as well as a kernel-based Jointly Smooth Function technique, to disentangle the redundant parameter combinations that do not affect the output behavior from the ones that do. We discuss the interpretability of our data-driven effective parameters, and demonstrate the utility of the approach both for behavior prediction and parameter estimation. In the latter task, it becomes important to describe level sets in parameter space that are consistent with a particular output behavior. We validate our approach on a model of multisite phosphorylation, where a reduced set of effective parameters (nonlinear combinations of the physical ones) has previously been established analytically.

Evangelou, Nikolaos↗

Limb radiance inversion: Iterative convergence for a nonlinear kernal

The features of the limb inversion problem that differentiate it from the nadir problem are described; the most important of these are the sharply peaked weighting functions and the nonlinear kernel that arises because the atmosphere is required to be in hydrostatic balance. The problem may be split into two parts: given the pressure at one level and the measured radiances, can the temperatures be retrieved? And how can the pressure be obtained at one level? The second problem is shown to depend on the first, which is solved iteratively. The convergence properties and final accuracies are presented. Inversion to obtain trace constituents is briefly discussed.

Gille, J. C.↗

The Determination of the Large-Scale Circulation of the Pacific Ocean from Satellite Altimetry using Model Green's Functions

A Green's function method for obtaining an estimate of the ocean circulation using both a general circulation model and altimetric data is demonstrated. The fundamental assumption is that the model is so accurate that the differences between the observations and the model-estimated fields obey a linear dynamics. In the present case, the calculations are demonstrated for model/data differences occurring on very a large scale, where the linearization hypothesis appears to be a good one. A semi-automatic linearization of the Bryan/Cox general circulation model is effected by calculating the model response to a series of isolated (in both space and time) geostrophically balanced vortices. These resulting impulse responses or 'Green's functions' then provide the kernels for a linear inverse problem. The method is first demonstrated with a set of 'twin experiments' and then with real data spanning the entire model domain and a year of TOPEX/POSEIDON observations. Our present focus is on the estimate of the time-mean and annual cycle of the model. Residuals of the inversion/assimilation are largest in the western tropical Pacific, and are believed to reflect primarily geoid error. Vertical resolution diminishes with depth with 1 year of data. The model mean is modified such that the subtropical gyre is weakened by about 1 cm/s and the center of the gyre shifted southward by about 10 deg. Corrections to the flow field at the annual cycle suggest that the dynamical response is weak except in the tropics, where the estimated seasonal cycle of the low-latitude current system is of the order of 2 cm/s. The underestimation of observed fluctuations can be related to the inversion on the coarse spatial grid, which does not permit full resolution of the tropical physics. The methodology is easily extended to higher resolution, to use of spatially correlated errors, and to other data types.

Stammer, Detlef↗

Land Surface Temperature Measurements from EOS MODIS Data

We made modifications to the linear kernel bidirectional reflectance distribution function (BRDF) models from Roujean et al. and Wanner et al. that extend the spectral range into the thermal infrared (TIR). With these TIR BRDF models and the IGBP land-cover product, we developed a classification-based emissivity database for the EOS/MODIS land-surface temperature (LST) algorithm and used it in version V2.0 of the MODIS LST code. Two V2.0 LST codes have been delivered to the MODIS SDST, one for the daily L2 and L3 LST products, and another for the 8-day 1km L3 LST product. New TIR thermometers (broadband radiometer with a filter in the 10-13 micron window) and an IR camera have been purchased in order to reduce the uncertainty in LST field measurements due to the temporal and spatial variations in LST. New improvements have been made to the existing TIR spectrometer in order to increase its accuracy to 0.2 C that will be required in the vicarious calibration of the MODIS TIR bands.

Wan, Zhengming↗

Space Radiation and the Challenges Towards Effective Shielding Solutions

The hazards of space radiation and their effective mitigation strategies continue to pose special science and technology challenges to NASA. It is widely accepted now that shielding space vehicles and structures will have to rely on new and innovative materials since aluminum, like all high Z materials, are poor shields against the particulate and highly ionizing nature of space radiation. Shielding solutions, motivated and constrained by power and mass limitations, couple this realization with "multifunctionality," both in design concept as well as in material function and composition. Materials endowed with effective shielding properties as well as with some degree of multi‐functionality may be the kernel of the so‐called "radiation‐smart" structures and designs. This talk will present some of the challenges and potential mitigation ideas towards the realization of such structures and designs.

Barghouty, Abdulnasser↗

File Specification for GEOS-5 FP (Forward Processing)

The GEOS-5 FP Atmospheric Data Assimilation System (GEOS-5 ADAS) uses an analysis developed jointly with NOAA's National Centers for Environmental Prediction (NCEP), which allows the Global Modeling and Assimilation Office (GMAO) to take advantage of the developments at NCEP and the Joint Center for Satellite Data Assimilation (JCSDA). The GEOS-5 AGCM uses the finite-volume dynamics (Lin, 2004) integrated with various physics packages (e.g, Bacmeister et al., 2006), under the Earth System Modeling Framework (ESMF) including the Catchment Land Surface Model (CLSM) (e.g., Koster et al., 2000). The GSI analysis is a three-dimensional variational (3DVar) analysis applied in grid-point space to facilitate the implementation of anisotropic, inhomogeneous covariances (e.g., Wu et al., 2002; Derber et al., 2003). The GSI implementation for GEOS-5 FP incorporates a set of recursive filters that produce approximately Gaussian smoothing kernels and isotropic correlation functions. The GEOS-5 ADAS is documented in Rienecker et al. (2008). More recent updates to the model are presented in Molod et al. (2011). The GEOS-5 system actively assimilates roughly 2 × 10(exp 6) observations for each analysis, including about 7.5 × 10(exp 5) AIRS radiance data. The input stream is roughly twice this volume, but because of the large volume, the data are thinned commensurate with the analysis grid to reduce the computational burden. Data are also rejected from the analysis through quality control procedures designed to detect, for example, the presence of cloud. To minimize the spurious periodic perturbations of the analysis, GEOS-5 FP uses the Incremental Analysis Update (IAU) technique developed by Bloom et al. (1996). More details of this procedure are given in Appendix A. The assimilation is performed at a horizontal resolution of 0.3125-degree longitude by 0.25- degree latitude and at 72 levels, extending to 0.01 hPa. All products are generated at the native resolution of the horizontal grid. The majority of data products are time-averaged, but four instantaneous products are also available. Hourly data intervals are used for two-dimensional products, while 3-hourly intervals are used for three-dimensional products. These may be on the model's native 72-layer vertical grid or at 42 pressure surfaces extending to 0.1 hPa. This document describes the gridded output files produced by the GMAO near real-time operational FP, using the most recent version of the GEOS-5 assimilation system. Additional details about variables listed in this file specification can be found in a separate document, the GEOS-5 File Specification Variable Definition Glossary. Documentation about the current access methods for products described in this document can be found on the GMAO products page: http://gmao.gsfc.nasa.gov/products/.

GSI↗

File Specification for GEOS-5 FP-IT (Forward Processing for Instrument Teams)

The GEOS-5 FP-IT Atmospheric Data Assimilation System (GEOS-5 ADAS) uses an analysis developed jointly with NOAA's National Centers for Environmental Prediction (NCEP), which allows the Global Modeling and Assimilation Office (GMAO) to take advantage of the developments at NCEP and the Joint Center for Satellite Data Assimilation (JCSDA). The GEOS-5 AGCM uses the finite-volume dynamics (Lin, 2004) integrated with various physics packages (e.g, Bacmeister et al., 2006), under the Earth System Modeling Framework (ESMF) including the Catchment Land Surface Model (CLSM) (e.g., Koster et al., 2000). The GSI analysis is a three-dimensional variational (3DVar) analysis applied in grid-point space to facilitate the implementation of anisotropic, inhomogeneous covariances (e.g., Wu et al., 2002; Derber et al., 2003). The GSI implementation for GEOS-5 FP-IT incorporates a set of recursive filters that produce approximately Gaussian smoothing kernels and isotropic correlation functions. The GEOS-5 ADAS is documented in Rienecker et al. (2008). More recent updates to the model are presented in Molod et al. (2011). The GEOS-5 system actively assimilates roughly 2 × 10(exp 6) observations for each analysis, including about 7.5 × 10(exp 5) AIRS radiance data. The input stream is roughly twice this volume, but because of the large volume, the data are thinned commensurate with the analysis grid to reduce the computational burden. Data are also rejected from the analysis through quality control procedures designed to detect, for example, the presence of cloud. To minimize the spurious periodic perturbations of the analysis, GEOS-5 FP-IT uses the Incremental Analysis Update (IAU) technique developed by Bloom et al. (1996). More details of this procedure are given in Appendix A. The analysis is performed at a horizontal resolution of 0.625-degree longitude by 0.5-degree latitude and at 72 levels, extending to 0.01 hPa. All products are generated at the native resolution of the horizontal grid. The majority of data products are time-averaged, but four instantaneous products are also available. Hourly data intervals are used for two-dimensional products, while 3-hourly intervals are used for three-dimensional products. These may be on the model's native 72-layer vertical grid or at 42 pressure surfaces extending to 0.1 hPa. This document describes the gridded output files produced by the GMAO near real-time operational GEOS-5 FP-IT processing in support of the EOS instrument teams. Additional details about variables listed in this file specification can be found in a separate document, the GEOS-5 File Specification Variable Definition Glossary.

3D Var↗

Extending GPU-accelerated Gaussian integrals in the TeraChem software package to f type orbitals: Implementation and applications

Here, the increasing availability of graphics processing units (GPUs) for scientific computing has prompted interest in accelerating quantum chemical calculations through their use. However, the complexity of integral kernels for high angular momentum basis functions often limits the utility of GPU implementations with large basis sets or for metal containing systems. In this work, we report the implementation of f function support in the GPU-accelerated TeraChem software package through the development of efficient kernels for the evaluation of Hamiltonian integrals. The high efficiency of the resulting code is demonstrated through density functional theory (DFT) calculations on increasingly large organic molecules and transition metal complexes, as well as coupled cluster singles and doubles calculations on water clusters. Preliminary investigations into Ni(I) catalysis with DFT and the photochemistry of MnH(CH 3 ) with complete active space self-consistent field are also carried out. Overall, our GPU-accelerated software appears to be well-suited for fast simulation of large transition metal containing systems, as well as organic molecules.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Self‐Consistent Convolutional Density Functional Approximations: Application to Adsorption at Metal Surfaces

The exchange-correlation (XC) functional in density functional theory is used to approximate multi-electron interactions. A plethora of different functionals are available, but nearly all are based on the hierarchy of inputs commonly referred to as “Jacob's ladder.” This paper introduces an approach to construct XC functionals with inputs from convolutions of arbitrary kernels with the electron density, providing a route to move beyond Jacob's ladder. We derive the variational derivative of these functionals, showing consistency with the generalized gradient approximation (GGA), and provide equations for variational derivatives based on multipole features from convolutional kernels. A proof-of-concept functional, PBEq, which generalizes the PBEα framework with mathematical equation being a spatially-resolved function of the monopole of the electron density, is presented and implemented. It allows a single functional to use different GGAs at different spatial points in a system, while obeying PBE constraints. Analysis of the results underlines the importance of error cancellation and the XC potential in data-driven functional design. After testing on small molecules, bulk metals, and surface catalysts, the results indicate that this approach is a promising route to simultaneously optimize multiple properties of interest.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Linear response time-dependent density functional theory of the Hubbard dimer

The asymmetric Hubbard dimer is used to study the density-dependence of the exact frequency-dependent kernel of linear-response time-dependent density functional theory. The exact form of the kernel is given, and the limitations of the adiabatic approximation utilizing the exact ground-state functional are shown. The oscillator strength sum rule is proven for lattice Hamiltonians, and relative oscillator strengths are defined appropriately. The method of Casida for extracting oscillator strengths from a frequency-dependent kernel is demonstrated to yield the exact result with this kernel. An unambiguous way of labelling the nature of excitations is given. The fluctuation-dissipation theorem is proven for the ground-state exchange-correlation energy. The distinction between weak and strong correlation is shown to depend on the ratio of interaction to asymmetry. A simple interpolation between carefully defined weak-correlation and strong-correlation regimes yields a density-functional approximation for the kernel that gives accurate transition frequencies for both the single and double excitations, including charge-transfer excitations. In conclusion, many exact results, limits, and expansions about those limits are given in the Appendices.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Lattice QCD Calculations of Transverse-Momentum-Dependent Soft Function through Large-Momentum Effective Theory

The transverse-momentum-dependent (TMD) soft function is a key ingredient in QCD factorization of Drell-Yan and other processes with relatively small transverse momentum. We present a lattice QCD study of this function at moderately large rapidity on a 2 + 1 flavor CLS dynamic ensemble with a = 0.098 fm. We extract the rapidity-independent (or intrinsic) part of the soft function through a large-momentumtransfer pseudoscalar meson form factor and its quasi-TMD wave function using leading-order factorization in large-momentum effective theory. We also investigate the rapidity-dependent part of the soft function—the Collins-Soper evolution kernel—based on the large-momentum evolution of the quasi-TMD wave function.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Stabilization functions of unforced cumulus clouds - Their nature and components

The nature and the spatial distribution of cumuli within an unforced cumulus cloud field are investigated. The thermodynamic effects of convection are quantified as functions of changes of convective available potential energy (CAPE) induced by the convective overturning, and the time rate of change of CAPE is parameterized in terms of a kernel of influence or stabilization function. A three-dimensional cloud model is used to infer and quantify stabilization functions by performing single-cloud experiments. On the basis of the results obtained, a new hypothesis with respect to the spatial distribution of cumuli is postulated, which states that, under completely homogeneous external conditions and assuming a spatially random distribution of cloud-triggering mechanisms, the spatial distribution of cumuli in the resulting cloud field must be regular, as opposed to either random or clustered, because cumulus clouds tend to reduce the available energy for convection, thereby inhibiting further convection nearby.

Ramirez, Jorge A.↗

Exponential Synthesis in the Kernel of a Symmetric Convolution

The paper describes a certain class of homogeneous equations of convolution type in spaces of analytic functions on convex domains. We obtain sufficient conditions under which every solution of an equation from this class is approximated by its elementary solutions.

97 MATHEMATICS AND COMPUTING↗

GPU acceleration of hybrid functional calculations in the SPARC electronic structure code

We present a Graphics Processing Unit (GPU)-accelerated version of the real-space SPARC electronic structure code for performing hybrid functional calculations in generalized Kohn–Sham density functional theory. In particular, we develop a batch variant of the recently formulated Kronecker product-based linear solver for the simultaneous solution of multiple linear systems. We then develop a modular, math kernel based implementation for hybrid functionals on NVIDIA architectures, where computationally intensive operations are offloaded to the GPUs, while the remaining workload is handled by the central processing units (CPUs). Considering bulk and slab examples, we demonstrate that GPUs enable up to 8× speedup in node-hours and 80× in core-hours compared to CPU-only execution, reducing the time to solution on V100 GPUs to around 300 s for a metallic system with over 6000 electrons, and significantly reducing the computational resources required for a given wall time.

Kohn-Sham density functional theory↗

Conforming window functions for meshfree methods

Window functions provide a base for the construction of approximation functions in many meshfree methods. They control the smoothness and extent of the approximation functions and are commonly defined using Euclidean distances which helps eliminate the need for a meshed discretization, simplifying model development for some classes of problems. However, for problems with complicated geometries such as nonconvex or multi-body domains, poor solution accuracy and convergence can occur unless the extents of the window functions, and thus approximation functions, are carefully controlled, often a time consuming or intractable task. Here in this paper, we present a method to provide more control in window function design, allowing efficient and systematic handling of complex geometries. “Conforming” window functions are constructed using Bernstein–Bézier splines defined on local triangulations with constraints imposed to control smoothness. Graph distances are used in conjunction with Euclidean metrics to provide adequate information for shaping the window functions. The conforming window functions are demonstrated using the Reproducing Kernel Particle Method showing improved accuracy and convergence rates for problems with challenging geometries. Conforming window functions are also demonstrated as a means to simplify the imposition of essential boundary conditions.

, rapid design-to-analysis↗

Point Spread Function Estimation and Uncertainty Quantification

An important component of analyzing images quantitatively is modeling image blur due to effects from the system for image capture. When the effect of image blur is assumed to be translation invariant and isotropic, it can be generally modeled as convolution with a radially symmetric kernel, called the point spread function (PSF). Standard techniques for estimating the PSF involve imaging a bright point source, but this is not always feasible (e.g. high energy radiography). This work provides a novel non-parametric approach to estimating the PSF from a calibration image of a vertical edge. Moreover, the approach is within a hierarchical Bayesian framework that in addition to providing a method for estimation, also gives a quantification of uncertainty in the estimate by Markov Chain Monte Carlo methods.

97 MATHEMATICS AND COMPUTING↗