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At least 253 records · Page 14

Fluorescence Correction Vegetation Index (FCVI): A physically based reflectance index to separate physiological and non-physiological information in far-red sun-induced chlorophyll fluorescence

Sun-induced chlorophyll fluorescence (SIF) has been used to track vegetation photosynthetic activity for improving estimation of gross primary productivity (GPP) and detecting plant stress. There are both physical and physiological controls of SIF measured at the surface and retrieved from remote sensing including satellite observations. In order to accurately use SIF for monitoring of plant physiology, the effects of physically-based radiation processes related to leaf and canopy structure, notably photosynthetically active radiation (PAR) absorption and SIF scattering and re-absorption, must be characterized. In this study, we investigate both PAR absorption and SIF scattering processes and find that although it is difficult to quantify their effects individually by using just reflectance, the combined effects of the two processes can be well approximated by a reflectance index. This index, referred to as FCVI (Fluorescence Correction Vegetation Index), is defined as the difference between near-infrared (NIR) and broad-band visible (VIS, 400–700 nm) reflectance acquired under identical sun-canopy-observer geometry of the SIF measurements. The development of the index was based on the physical connection between reflectance and far-red SIF, which was revealed by using the spectral invariant theory. The utility of FCVI to correct far-red SIF for PAR absorption and scattering effects, thus improving the link to photosynthesis, was tested with data from: (i) a field experiment for a growing season; and (ii) a numerical experiment which included a number of scenarios generated by a radiative transfer model. For both the observations and simulations, the FCVI provided a promising estimate of the impact of the physically-based radiation processes on far-red SIF of moderately dense canopies (i.e., FCVI ≥ 0.18). Normalizing the TOC far-red SIF by both the incident PAR (iPAR) and the FCVI provided a good estimate of the far-red fluorescence emission efficiency of the canopies examined. This approach enhances our ability to generalize retrievals for vegetation processes as they change through natural growth phases and seasons. Taken together, far-red SIF and FCVI may enable the assessment of the light partitioning of vegetation canopies, an essential step to facilitate the use of far-red SIF for tracking physiological processes.

Peiqi Yang↗

Remote sensing of solar radiation absorbed and reflected by vegetated land surfaces

1D and 3D radiative-transfer models have been used to investigate the problem of remotely sensed determination of vegetated land surface-absorbed and reflected solar radiation. Calculations were conducted for various illumination conditions to determine surface albedo, soil- and canopy-absorbed photosynthetically active and nonactive radiation, and normalized difference vegetation index. Simple predictive models are developed on the basis of the relationships among these parameters.

Myneni, Ranga B.↗

Assessing impacts of canopy 3D structure on chlorophyll fluorescence radiance and radiative budget of deciduous forest stands using DART

Although remote sensing (RS) of solar-induced chlorophyll fluorescence (SIF) is increasingly used as a valuable source of information about vegetation photosynthetic activity, the RS SIF observations are significantly influenced by canopy-specific structural features (i.e., canopy architecture including leaf area index and presence of woody components), atmospheric conditions during their acquisition (e.g., proportion of direct and diffuse irradiance) and observational geometric configurations (e.g., sun and viewing directions). Radiative transfer (RT) models have the potential to provide a better understanding of the canopy structural effects on the SIF emission and RS signals. Here, we used the DART model to assess the daily influence, from morning to evening, of forest 3D architecture on SIF nadir radiance, emission, escape factor and nadir yield of eight 100 m × 100 m forest study plots established in a temperate deciduous forest of the Smithsonian Environmental Research Center (Edgewater, MD, USA). The 3D architecture of each plot was derived from airborne LiDAR. DART simulations of these 3D forest plots and their 1D (i.e., vertical profile of sun-adapted and shade-adapted leaves) and 0D (i.e., homogeneous layer of sun-adapted leaves above an homogeneous layer of shade-adapted leaves) abstractions were compared to assess the relative errors (ε1D−3D and ε0D−3D) associated with horizontal and vertical structural heterogeneity, respectively. Forest 3D structure, especially horizontal heterogeneity, had a great influence on forest nadir SIF radiance, resulting in ε1D−3D up to 55% at 8:00 and 18:00 (i.e., for oblique sun directions). The key indicators of this impact, in the descending order of importance, were the SIF escape factor (ε1D−3D up to 40%), the attenuation of incident photosynthetically active radiation (ε1D−3D less than 5%), and the SIF emission yield (ε1D−3D less than 2%). The influence of forest architecture on the nadir SIF escape factor and SIF yield (ε1D−3D up to 40%) varied over time, with differences in forest stand structure, and per spectral domain, being always larger between 640 and 700 nm than between 700 and 850 nm. In addition, woody elements demonstrated a large influence on forest SIF radiance due to their “shading” effect (ε up to 17%) and their “blocking” effect (ε ≈ 10%), both of them higher for far-red than for red SIF. These results underline the importance of 3D forest canopy architecture, especially 2D heterogeneity, and inclusion of woody elements in RT modeling used for interpretation of the RS SIF signal, and subsequently for the estimation of gross primary production and detection of vegetation stress.

Omar Regaieg↗

Heat dissipation in controlled environment enclosures through the application of water screens

The use of plate glass-water thermal barriers in controlled environment facilities effectively reduces the thermal load within the plant growth chamber. This allows high PPFs to be provided for plant growth and development studies, adequate simulation of daily light integrals, and simulation of peak PPF's. Further, substantial amounts of incandescent lamp supplementation can be used to achieve simulation of daylight R:FR ratios which are needed to ensure adequate stem development in some species. While the focus in this paper is on the use of entire thermal barriers which separate the lighting enclosure from the plant growth chamber, the same principles apply to the use of water jackets for cooling individual lamps (such as can occur with xenon-arc lamps). In this instance, the barrier separating the lamps from the plant chamber can be much simpler (e.g., plexiglass) as the main function of the barrier is to separate the air ventilation of the lamp enclosure from the air system within the plant growth chamber. The main advantage of water as a thermal barrier is the negligible absorption of radiation in the photosynthetically-active and near infrared wavebands. Consequently, plate glass-water barriers typically allow transmission of approximately 90% of radiation in these regions. While ventilated double and triple glazing systems appear to be attractive alternative to water barriers from an operating standpoint, their significant absorption in the biologically-important wavebands (7 - 12%) with each glass layer and longer-wave cut-offs (typically 2500 - 4000 nm) makes them a much less attractive alternative. The data presented here demonstrate clearly that measurement of PPF alone is not an adequate representation of the radiation environment being used in a controlled environment study. The amounts and proportions of long-wave and short-wave radiation in a plant growth chamber are dependent on lamp type, lamp combination, presence of a thermal barrier, the type of thermal barrier between the lamps and the plant growing area and the overall construction and design of the chamber. It is important, therefore, in reporting results of controlled environment studies, to adequately describe both the details of the lighting system used and the characteristics of the radiation produced by that system, so results of different studies can be adequately evaluated and compared.

Warrington, I. J.↗

Spectral Bio-indicator Simulations for Tracking Photosynthetic Activities in a Corn Field

Accurate assessment of vegetation canopy optical properties plays a critical role in monitoring natural and managed ecosystems under environmental changes. In this context, radiative transfer (RT) models simulating vegetation canopy reflectance have been demonstrated to be a powerful tool for understanding and estimating spectral bio-indicators. In this study, two narrow band spectroradiometers were utilized to acquire observations over corn canopies for two summers. These in situ spectral data were then used to validate a two-layer Markov chain-based canopy reflectance model for simulating the Photochemical Reflectance Index (PRI), which has been widely used in recent vegetation photosynthetic light use efficiency (LUE) studies. The in situ PRI derived from narrow band hyperspectral reflectance exhibited clear responses to: 1) viewing geometry which affects the asset of light environment; and 2) seasonal variation corresponding to the growth stage. The RT model (ACRM) successfully simulated the responses to the variable viewing geometry. The best simulations were obtained when the model was set to run in the two layer mode using the sunlit leaves as the upper layer and shaded leaves as the lower layer. Simulated PRI values yielded much better correlations to in situ observations when the cornfield was dominated by green foliage during the early growth, vegetative and reproductive stages (r = 0.78 to 0.86) than in the later senescent stage (r = 0.65). Further sensitivity analyses were conducted to show the important influences of leaf area index (LAI) and the sunlit/shaded ratio on PRI observations.

Cheng, Yen-Ben↗

The Effects of an Improved Dynamic Vegetation Phenology Representation in a Global Land Surface Model

Evapotranspiration (ET) is a major driver of the interaction between the land surface and the atmosphere through its component mechanisms, including plant transpiration (T) and soil evaporation. To accurately capture land-atmosphere interactions in global Earth System Models, it is thus critical that the underlying land surface models accurately model both the land hydrology as well as the dynamic response of vegetation to environmental drivers. In an effort to introduce a more realistic vegetation representation, the NASA Catchment land surface model, which is part of the Goddard Earth Observing System (GEOS), has previously been merged with the carbon and nitrogen physics modules of the Community Land Model version 4, resulting in the new Catchment-CN model. Catchment-CN has inherited the advanced treatment of land surface hydrology of Catchment, but is additionally able to dynamically model the response of vegetation to environmental drivers, in contrast to the fixed vegetation climatology that was prescribed in Catchment. Recently, the parameterization of Catchment-CN vegetation has been augmented to better account for variability of vegetation responses to external forcings within existing plant functional types, and vegetation parameters have been calibrated against Moderate Resolution Imaging Spectrometer observations of the fraction of absorbed photosynthetically radiation. These efforts have led to a significant reduction in the RMSE of modeled photosynthetic activity with respect to observations.This presentation investigates the effect of the improved vegetation representation on the partitioning of ET within Catchment-CN. Specifically, we compare global maps of the T:ET ratio across different temporal scales in (1) the original Catchment model, (2) the original Catchment-CN model, and (3) the augmented and calibrated Catchment-CN model. The modeled T and ET estimates are compared against a comprehensive set of ground observations from various field studies, as well as independent global T:ET estimates from different ET algorithms provided in the context of the Water Cycle Observation Multi-mission Strategy ? Evapotranspiration (WACMOS-ET) initiative.

Kolassa, J.↗

Interpretation of Nimbus-7 37 GHz microwave brightness temperature data in semi-arid southern Africa

Monthly 37 GHz microwave polarization difference temperatures (MPDT) derived from the Nimbus-7 scanning multichannel microwave radiometer (SMMR) for southern Africa from 1979 to 1985 are compared with rainfall and Advanced Very High Resolution Radiometer (AVHRR) normalized difference vegetation index (NDVI) data. MPDT rose sharply during a drought episode which occurred within the period included in the data. The rise was seen not only in the growing season, but also in the dry season MPDT when no actively photosynthetic, water-containing leaves are present. The results suggest that scattering of the emitted microwave radiation by dead and living vegetation is a more important factor than has previously been recognized.

Prince, S. D.↗

A plant canopy light absorption model with application to wheat

From the light absorption model the absorption of light in the photosynthetically active region of the spectrum was calculated for a Penjamo wheat crop for several situations including: (1) the percent absorption of the incident radiation by a canopy having a four layer structure; (2) the percent absorption of light by the individual layers within a four layer canopy and by the underlying soil; (3) the percent absorption of light by each vegetative canopy layer for variable sun angle; and (4) the cumulative solar energy absorbed by the developing wheat canopy as it progresses from a single layer through its growth stages to a three layer canopy. This calculation was also presented as a function of the leaf area index.

Chance, J. E.↗

Plant canopy light absorption model with application to wheat

A light absorption model (LAM) for vegetative plant canopies has been derived from the Suits reflectance model. From the LAM the absorption of light in the photosynthetically active region of the spectrum (400-700 nm) has been calculated for a Penjamo wheat crop for several situations including (a) the percent absorption of the incident radiation by a canopy of LAI 3.1 having a four-layer structure, (b) the percent absorption of light by the individual layers within a four-layer canopy and by the underlying soil, (c) the percent absorption of light by each vegetative canopy layer for variable sun angle, and (d) the cumulative solar energy absorbed by the developing wheat canopy as it progresses from a single layer through its growth stages to a three-layer canopy. This calculation is also presented as a function of the leaf area index and is shown to be in agreement with experimental data reported by Kanemasu on Plainsman V wheat.

Chance, J. E.↗

Accounting for Changes in Radiation Improves the Ability of SIF to Track Water Stress-Induced Losses in Summer GPP in a Temperate Deciduous Forest

Global observations of solar-induced chlorophyll fluorescence (SIF) are available from multiple satellite platforms, and SIF is increasingly used as a proxy for photosynthetic activity and ecosystem productivity. Because the relationship between SIF and gross primary productivity (GPP) depends on a variety of factors including ecosystem type and environmental conditions, it is necessary to study SIF observations across various spatiotemporal scales and ecosystems. To explore how SIF signals relate to productivity over a temperate deciduous forest, we deployed a PhotoSpec spectrometer system at the University of Michigan Biological Station AmeriFlux site (US-UMB) in the northern Lower Peninsula of Michigan during the 2018 and 2019 growing seasons. We found that SIF correlated with GPP across diurnal and seasonal cycles (R 2 = 0.61 and 0.64 for 90-min- and daily-averaged data), but that SIF signals were more strongly related to downwelling radiation than GPP (R 2 = 0.91 for daily-averaged data). The dependence of SIF on radiation obscured the impact of intraseasonal drought in the SIF timeseries, but drought stress was apparent as a decrease in relative SIF, which exhibited a stronger correlation with GPP (R 2 = 0.56) than other remotely sensed data over the drought period. These results highlight the potential of SIF for detecting stress-induced losses in forest productivity. Additionally, we found that the red:far-red SIF ratio did not exhibit a response to water stress-induced losses in productivity, but was largely driven by seasonal and interannual changes in canopy structure, as well as by synoptic changes in downwelling radiation.

54 ENVIRONMENTAL SCIENCES↗

Integration of physiologically relevant photosynthetic energy flows into whole genome models of light‐driven metabolism

SUMMARY Characterizing photosynthetic productivity is necessary to understand the ecological contributions and biotechnology potential of plants, algae, and cyanobacteria. Light capture efficiency and photophysiology have long been characterized by measurements of chlorophyll fluorescence dynamics. However, these investigations typically do not consider the metabolic network downstream of light harvesting. By contrast, genome‐scale metabolic models capture species‐specific metabolic capabilities but have yet to incorporate the rapid regulation of the light harvesting apparatus. Here, we combine chlorophyll fluorescence parameters defining photosynthetic and non‐photosynthetic yield of absorbed light energy with a metabolic model of the pennate diatom Phaeodactylum tricornutum. This integration increases the model predictive accuracy regarding growth rate, intracellular oxygen production and consumption, and metabolic pathway usage. Through the quantification of excess electron transport, we uncover the sequential activation of non‐radiative energy dissipation processes, cross‐compartment electron shuttling, and non‐photochemical quenching as the rapid photoacclimation strategy in P. tricornutum. Interestingly, the photon absorption thresholds that trigger the transition between these mechanisms were consistent at low and high incident photon fluxes. We use this understanding to explore engineering strategies for rerouting cellular resources and excess light energy towards bioproducts in silico . Overall, we present a methodology for incorporating a common, informative data type into computational models of light‐driven metabolism and show its utilization within the design–build–test–learn cycle for engineering of photosynthetic organisms.

59 BASIC BIOLOGICAL SCIENCES↗

Simulation of solar radiation absorption in vegetation canopies

A solar radiation canopy absorption model, including multiple scattering effects, was developed and tested for a lodgepole pine (Pinus contorta) canopy. Reflectance above the canopy, spectral transmittance to the ground layer, and geometric and spectral measurements of canopy elements were made. Relatively large differentials occurred in spectral absorption by canopy layers, especially in the photosynthetically active region, as a function of solar zenith angle. In addition, the proportion of total global irradiance absorbed by individual layers varied greatly as a function of solar zenith angle. However, absorption by the entire canopy system remained relatively constant.

Kimes, D. S.↗

Variability of photosynthetically available and total solar irradiance at the surface during FIFE - A satellite description

The satellite method of Gautier et al. (1980) is applied to GOES-6 radiometer data to determine the availability of quantitative data on the temporal variability of photosynthetically available radiation (PAR) and insolation. Comparisons with in situ measurements indicate that the modified satellite method yields insolation and PAR data with small biases and standard errors of 9 and 6.5 percent respectively. It is shown that large-scale satellite climatologies of insolation can be converted into climatologies of PAR to study photosynthetic activity on a global scale.

Frouin, Robert↗

Quantifying Carbon Cycle Extremes and Attributing Their Causes Under Climate and Land Use and Land Cover Change From 1850 to 2300

The increasing atmospheric carbon dioxide (CO 2 ) mole fraction affects global climate through radiative (trapping longwave radiation) and physiological effects (reduction of plant transpiration). We use the simulations of the Community Earth System Model (CESM1-BGC) forced with Representative Concentration Pathway 8.5 to investigate climate-vegetation feedbacks from 1850 to the year 2300. Human-induced land use and land cover change (LULCC), through biogeochemical and biogeophysical processes, alter the climate and modify photosynthetic activity. The changing characteristics of extreme anomalies in photosynthesis, referred to as carbon cycle extremes, increase the uncertainty of terrestrial ecosystems to act as a net carbon sink. However, the role of LULCC in altering carbon cycle extremes under business-as-usual (continuously rising) CO 2 emissions is unknown. Here we show that LULCC magnifies the intensity, frequency, and extent of carbon cycle extremes, resulting in a net reduction in expected photosynthetic activity in the future. We found that large temporally contiguous negative carbon cycle extremes are due to a persistent decrease in soil moisture, which is triggered by declines in precipitation. With LULCC and global warming, vegetation exhibits increased vulnerability to hot and dry environmental conditions, increasing the frequency of fire events and resulting in considerable losses in photosynthetic activity. While most regions show strengthening of negative carbon cycle extremes, a few locations show a weakening effect driven by declining vegetation cover or benign climate conditions for photosynthesis. Increasing hot, dry, and fire-driven carbon cycle extremes are essential for improving carbon cycle modeling and estimation of ecosystem responses to LULCC and rising CO 2 mole fractions. Moreover, large aberrations in vegetation productivity represent potential and growing threats to human lives, wildlife, and food security.

54 ENVIRONMENTAL SCIENCES↗

Radiative and Physiological Effects of Increased CO2: How Does This Interaction Affect Climate?

Several climate models indicate that in a 2xCO2 environment, temperature and precipitation would increase and runoff would increase faster than precipitation. These models, however, did not allow the vegetation to increase its leaf density as a response to the physiological effects of increased CO2 and consequent changes in climate. Other assessments included these interactions but did not account for the vegetation downregulation to reduce plant's photosynthetic activity and as such resulted in a weak vegetation negative response. When we combine these interactions in climate simulations with 2xCO2, the associated increase in precipitation contributes primarily to increase evapotranspiration rather than surface runoff, consistent with observations, and results in an additional cooling effect not fully accounted for in previous 2xCO2 simulations. By accelerating the water cycle, this feedback slows but does not alleviate the projected warming, reducing the land surface warming by 0.6 C. Compared to previous studies, these results imply that long term negative feedback from CO2-induced increases in vegetation density could reduce temperature following a stabilization of CO2 concentration.

Bounoua, Lahouari↗

Phototrophs in high-iron-concentration microbial mats: physiological ecology of phototrophs in an iron-depositing hot spring

At Chocolate Pots Hot Springs in Yellowstone National Park the source waters have a pH near neutral, contain high concentrations of reduced iron, and lack sulfide. An iron formation that is associated with cyanobacterial mats is actively deposited. The uptake of [(14)C]bicarbonate was used to assess the impact of ferrous iron on photosynthesis in this environment. Photoautotrophy in some of the mats was stimulated by ferrous iron (1.0 mM). Microelectrodes were used to determine the impact of photosynthetic activity on the oxygen content and the pH in the mat and sediment microenvironments. Photosynthesis increased the oxygen concentration to 200% of air saturation levels in the top millimeter of the mats. The oxygen concentration decreased with depth and in the dark. Light-dependent increases in pH were observed. The penetration of light in the mats and in the sediments was determined. Visible radiation was rapidly attenuated in the top 2 mm of the iron-rich mats. Near-infrared radiation penetrated deeper. Iron was totally oxidized in the top few millimeters, but reduced iron was detected at greater depths. By increasing the pH and the oxygen concentration in the surface sediments, the cyanobacteria could potentially increase the rate of iron oxidation in situ. This high-iron-content hot spring provides a suitable model for studying the interactions of microbial photosynthesis and iron deposition and the role of photosynthesis in microbial iron cycling. This model may help clarify the potential role of photosynthesis in the deposition of Precambrian banded iron formations.

NASA Discipline Exobiology↗

Biosignature Anisotropy Modeled on Temperate Tidally Locked M-Dwarf Planets

A planet’s atmospheric constituents (e.g., O2, O3, H2Ov, CO2, CH4, and N2O) can provide clues to its surface habitability, and may offer biosignature targets for remote life detection efforts. The plethora of rocky exoplanets found by recent transit surveys (e.g., the Kepler mission) indicates that potentially habitable systems orbiting K- and M-dwarf stars may have very different orbital and atmospheric characteristics than Earth. To assess the physical distribution and observational prospects of various biosignatures and habitability indicators, it is important to understand how they may change under different astrophysical and geophysical configurations, and to simulate these changes with models that include feedbacks between different subsystems of a planet’s climate. Here we use a three-dimensional (3D) Chemistry–Climate model (CCM) to study the effects of changes in stellar spectral energy distribution (SED), stellar activity, and planetary rotation on Earth analogs and tidally locked planets. Our simulations show that, apart from shifts in stellar SEDs and UV radiation, changes in illumination geometry and rotation-induced circulation can influence the global distribution of atmospheric biosignatures. We find that the stratospheric day-to-nightside mixing ratio differences on tidally locked planets remain low (<20%) across the majority of the canonical biosignatures. Interestingly, however, secondary photosynthetic biosignatures (e.g., C2H6S) show much greater (∼67%) day-to-nightside differences, and point to regimes in which tidal locking could have observationally distinguishable effects on phase curve, transit, and secondary eclipse measurements. Overall, this work highlights the potential and promise for 3D CCMs to study the atmospheric properties and habitability of terrestrial worlds.

Chen, Howard↗

Will Global Change Effect Primary Productivity in Coastal Ecosystems?

Algae are the base of coastal food webs because they provide the source of organic carbon for the remaining members of the community. Thus, the rate that they produce organic carbon to a large extent controls the productivity of the entire ecosystem. Factors that control algal productivity range from the physical (e.g., temperature, light), chemical (e.g., nutrient levels) to the biological (e.g., grazing). Currently, levels of atmospheric carbon dioxide surficial fluxes of ultraviolet radiation are rising. Both of these environmental variables can have a profound effect on algal productivity. Atmospheric carbon dioxide may increase surficial levels of dissolved inorganic carbon. Our laboratory and field studies of algal mats and phytoplankton cultures under ambient and elevated levels of pCO2 show that elevated levels of inorganic carbon can cause an increase in photosynthetic rates. In some cases, this increase will cause an increase in phytoplankton numbers. There may be an increase in the excretion of fixed carbon, which in turn may enhance bacterial productivity. Alternatively, in analogy with studies on the effect of elevated pCO2 on plants, the phytoplankton could change their carbon to nitrogen ratios, which will effect the feeding of the planktonic grazers. The seasonal depletion of stratospheric ozone has resulted in elevated fluxes of UVB radiation superimposed on the normal seasonal variation. Present surface UV fluxes have a significant impact on phytoplankton physiology, including the inhibition of the light and dark reactions of photosynthesis, inhibition of nitrogenase activity, inhibition of heterocyst formation, reduction in motility, increased synthesis of the UV-screening pigment scytonemin, and mutation. After reviewing these issues, recent work in our lab on measuring the effect of UV radiation on phytoplankton in the San Francisco Bay Estuary will be presented.

Rothschild, Lynn J.↗