Introduction to Exoplanets and the TESS Planet Finding Pipeline
I present a description of the Kepler and TESS mission planet search pipelines, and discuss key science results achieved by Kepler and those expected for the TESS Mission.
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I present a description of the Kepler and TESS mission planet search pipelines, and discuss key science results achieved by Kepler and those expected for the TESS Mission.
We describe the Photometric Analysis (PA) software component and its context in the Kepler Science Operations Center (SOC) Science Processing Pipeline. The primary tasks of this module are to compute the photometric flux and photocenters (centroids) for over 160,000 long cadence (~thirty minute) and 512 short cadence (~one minute) stellar targets from the calibrated pixels in their respective apertures. We discuss science algorithms for long and short cadence PA: cosmic ray cleaning; background estimation and removal; aperture photometry; and flux-weighted centroiding. We discuss the end-to-end propagation of uncertainties for the science algorithms. Finally, we present examples of photometric apertures, raw flux light curves, and centroid time series from Kepler flight data. PA light curves, centroid time series, and barycentric timestamp corrections are exported to the Multi-mission Archive at Space Telescope [Science Institute] (MAST) and are made available to the general public in accordance with the NASA/Kepler data release policy.
In order to improve the cryogenic propellant management technologies for a liquid hydrogen rocket with high specific impulse, JAXA, the University of Tokyo, and the NASA Glenn Research Center have jointly organized a multi-agency model validation collaboration project. As part of this project, JAXA's boiling simulation was validated with NASA's experimental data on vertical pipeline chill-down. Simulation results were in good agreement with the experimental data obtained using an improved boiling model to reproduce the spray flow. This activity achieved liquid hydrogen turbo-pump simulation at JAXA for grasping the boiling flow phenomenon from engine cut-off to re-ignition. This joint research resulted in an international cooperative relationship for discussing the cryogenic propellant management technologies necessary to develop next-generation liquid rockets.
NASA's future global orbital mission, currently in development as the Surface Biology and Geology (SBG) Designated Observable study, will acquire relatively high resolution solar-reflected spectroscopy and thermal infrared observations. Innovative processes must be utilized for handling the high volume of data anticipated to be collected, which is anticipated to exceed 100 terabytes/day, greater than NASA's total extant airborne hyperspectral data collection. Collecting, processing/re-processing, disseminating, and exploiting this volume of data presents new challenges. To begin addressing them, NASA is drawing upon the expertise developed from its astrophysics programs to address Earth science and applications. Specifically, NASA is adapting the science processing operations technology developed for the Kepler and TESS planet-hunting missions for imaging spectroscopy data processing. This technology development has been the foundation for the remarkable scientific successes of Kepler and TESS. The Kepler/TESS data processing technology provides a scalable architecture for robust, repeatable, and replicable science and application products while enabling the Earth science community to develop, test, and implement new algorithms. Our effort to leverage this existing capability has begun by ingesting data and applying workflows from the EO-1/Hyperion 17-year mission archive that provides globally sampled visible through shortwave infrared spectra that are representative of SBG data types and volumes. This pathfinding data processing system will help define the solutions to processing SBG data volumes and will enable the scientific community to interact with the data and processing pipeline to create new science products.
The prevalence and importance of large sequencing datasets in microbiology has led to a movement to share microbial ecology experimental data through open-access databases. This is particularly true of experiments that are difficult to replicate, such as those conducted in the spaceflight environment and shared via NASA GeneLab. It is now possible and indeed valuable for students to access and re-analyze these shared datasets for educational and research purposes. To provide students with experience utilizing microbial bioinformatics tools, GeneLab for Colleges and Universities (GL4U) has designed AstroAmpSeq, a week-long, virtually implemented project-based learning (PBL) minicourse to instruct undergraduate students on 16S amplicon sequencing. AstroAmpSeq was created to be accessible to students without prior bioinformatics or microbial ecology experience. During the minicourse students work in teams to process, analyze, and visualize a subsample of GeneLab dataset GLDS-280 using GeneLab’s standard amplicon processing pipeline, which is based in R. Students develop a hypothesis related to the dataset then generate and analyze figures to evaluate their hypothesis. Formative assessment of student learning is determined via pre- and post-evaluations, peer feedback, and self-reflection. Project and presentation rubrics serve as a summative assessment of student learning. GL4U AstroAmpSeq not only meets American Society for Microbiology Curriculum Guidelines, but also incites student interest in research by an inquiry-based approach and can be made part of a larger semester-long curriculum. GL4U AstroAmpSeq raises awareness of space microbiology and bioinformatics as a field and career path among undergraduates. Further, by using a GeneLab dataset and nesting microbiology techniques into the real-world application of space biology, AstroAmpSeq enforces deeper and longer-lasting student learning.
GeneLab Data Processing team members will present the GeneLab standard processing pipelines and RNAseq batch correction project to Analysis Working Group members during the private session of the 2021 AWG Workshop.
For decades, a leaky pipeline analogy has been used when discussing diversity issues in STEM fields. However, this imagery is overly simplistic and does not capture critical issues that contribute to people leaving the field. It puts distance between structural issues, our actions, and why people leave the field. When we view our research structure as something more complex, we can start taking ownership and frame more impactful solutions instead of misidentifying important issues and providing ineffective short-term solutions. Many of the issues discussed in the "Cultivating a culture of inclusivity in Heliophysics" position paper have counterparts within our policies and our institutions. To fully address and mitigate the current issues within our field, we have identified a need to cultivate a positive, safe, inclusive, and effective environment. However, we need both cultural and programmatic changes. We will try to identify systemic issues that inhibit many from fully participating and potential solutions, as well as groups and fields producing best practices for creating and enabling effective environments where innovation can occur.
Microorganisms hold great promise for on demand production of labile nutrients and pharmaceuticals as well recycling and in situ resource utilization. The utilization of microorganisms for such tasks on space missions is hindered by the limited data on how microbes respond to spaceflight. For example, the genetic stability of microorganisms, and the genomic engineered traits added to deliver desired functions, over long-term storage in the spacecraft environment is poorly understood. The BioNutrients-1 (BN-1) mission conducted a 5-year study of desiccated storage in Low Earth Orbit (LEO) to evaluate the suitability of eight synthetic biology chassis organisms for long-duration space missions. We are employing high-depth, whole genome sequencing (WGS) to determine the mutagenic load that accumulated during long-term storage. Mutation analysis pipelines are well established for homogenous culture grown from a single colony, but the mutational landscape of the BN-1 samples present a unique analysis challenge, as every cell in the BN-1 samples had a unique genetic journey of DNA damage and repair. Consequently, sequence variants are expected at low allele frequency within samples. To address this genetic complexity, we apply two distinct computational approaches to identify mutations in pre-existing WGS data collected from populations of Chlamydomonas reinhardtii that were exposed to UV mutagenesis and growth in LEO. For reference genome free mutation detection, we utilized DiscoSNP++, which is a de Bruijn graph approach. For reference genome-based mutation detection we utilize GATK for Microbes, which is a Bayesian probabilistic approach. We will benchmark these approaches against the mutations originally identified using CRISP, a method optimized for pooled samples. Ultimately, quantifying the mutation load imposed by storage or growth on the ISS will help identify chassis organisms with both high levels of genome stability and viability, which are desirable traits for implementation of bioproduction in long-duration missions.
In this study, we explored fusion of experiments and simulations for real time identification of pipeline defects across physical and non-physical domains. The challenges associated to data processing were addressed and a combined classification models was presented via CNN models. In addition, regression model based on XGBOOST is built to determine the defect location and defect dimension from data-driven features of guided wave signals captured by SMS fiber optic sensor.
Full-width abstract \renewcommand{\maketitlehookd}{% \begin{abstract} \noindent Fermilab's accelerator timing links broadcast short event codes to thousands of devices at once, but the links themselves carry no absolute notion of time; that comes separately from a White Rabbit reference. This work builds the piece that ties the two together on a single board. On a Xilinx Kria KR260 (Zynq UltraScale+), the programmable logic decodes a real Fermilab TCLK link, stamps every event with an absolute White-Rabbit \{sec, ns\} UTC time, and reads the timestamped stream out over AXI4-Lite; a thin Linux process on the same die publishes each event into a Redis stream on the control network. To exercise the full chain on one board, the decoded events are re-encoded as gigabit ACLK, transmitted out an SFP+ optical port, looped back over a short fiber jumper, and decoded again on the same timeline, and are additionally mirrored as an ACLK-Lite Manchester waveform for benchtop probing. Across sustained, multi-day testing against real Fermilab TCLK, the pipeline has decoded, timestamped, and published hundreds of millions of events with practically zero loss, and folding the timestamped stream on the 60-second accelerator supercycle recovers the machine's periodic structure directly from the published data.
We develop a weakly intrusive framework to simulate the propagation of uncertainty in solutions of generic hyperbolic partial differential equation systems on graph-connected domains with nodal coupling and boundary conditions. The method is based on the Stochastic Finite Volume (SFV) approach and can be applied for uncertainty quantification (UQ) of the dynamical state of fluid flow over actuated transport networks. The numerical scheme has specific advantages for modeling intertemporal uncertainty in time-varying boundary parameters, which cannot be characterized by strict upper and lower (interval) bounds. We describe the scheme for a single pipe, and then formulate the controlled junction Riemann problem (JRP) that enables the extension to general network structures. In conclusion, we demonstrate the method's capabilities and performance characteristics using a standard benchmark test network.
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TESS (Transiting Exoplanet Survey Satellite) launched on 18-4-2018 to conduct a two-year, near all-sky survey for at least 50 nearby exoplanets for which masses can be obtained. TESS just completed surveying the southern hemisphere, identifying hundreds of candidate exoplanet systems and unveiling a plethora of exciting non-exoplanet astrophysics results, such as asteroseismology, asteroids, and supernova. The TESS Science Processing Operations Center (SPOC) at NASA Ames Research Center processes the image data downlinked from TESS every two weeks to generate a variety of data products hosted at the Mikulski Archive for Space Telescopes (MAST). For each approximately 1-month sector, the SPOC calibrates the image data for both 30-minute Full Frame Images (FFIs) and up to 20,000 pre-selected 2-minute target star postage stamps. Simple aperture photometry and systematic error-corrected flux-time series are generated for the 2-minute data. The data products also include co-trending basis vectors (CBVs) and calibration files, such as the Pixel Response Functions (PRF). The archival files are modeled after Kepler's for ease of use, and include Target Pixel Files (TPFs) containing original and calibrated 2-minute image data, Light Curve files (LCs) containing the photometric time series for each 2-minute target, as well as the Data Validation products. New products derived from the FFIs include light curves for the 2-minute targets and CBVs. The TESS Mission is funded by NASA's Science Mission Directorate as an Astrophysics Explorer Mission.
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