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CHESS 2025: Crown polygons and extracted reflectance for field sampling sites

This dataset contains (1) crown polygons for each tree, meadow, and shrub site sampled in the 2025 Colorado Headwaters Ecological Spectroscopy Study (CHESS) campaign (in geojson format, .geojson) and (2) extracted reflectance, uncertainty, and shade estimates for each crown polygon from the 2018 National Ecological Observatory Network (NEON) and 2025 CHESS campaigns. (in CSV format, .csv). Additional metadata are provided in a data dictionary describing column names and definitions (dd.csv), and in a file-level metadata file (flmd.csv). Crown polygons were manually delineated for each site in the 2025 campaign using a combination of field-collected GPS data (doi:10.15485/3022418), RGB (red, green, blue) and false color reflectance mosaics (doi:10.15485/3013535), and LiDAR-derived (Light Detection and Ranging) canopy height (CHM) and digital surface (DSM) models (DOI and citation to be added upon publication). Where there was misalignment between the spectrometer- and LiDAR-derived data products, polygons prioritized alignment with the spectrometer-derived data products. Polygons were delineated conservatively to only select pixels representative of vegetation samples collected in the field. Crown polygons for 2018 are published at (doi:10.15485/1618130) and were developed using the same protocol. For each polygon, all pixels from all flightlines were extracted where the pixel centroid was contained within the polygon. For each pixel, we extracted the surface reflectance, uncertainty, and shade estimates. Details on the extracted datasets are available at (doi:10.15485/3013527, doi:10.15485/3013535). CHESS Project Description: The Colorado Headwaters Ecological Spectroscopy Study (CHESS) comprised a multi-week airborne remote sensing and field observation campaign in the Upper Gunnison Basin, Colorado, conducted in June and July of 2025. Airborne remote sensing was conducted by the National Ecological Observatory Network Airborne Observation Platform (NEON AOP), concurrent with a field campaign run by the Rocky Mountain Biological Laboratory (RMBL), the Lawrence Berkeley National Laboratory (LBNL) and SLAC National Accelerator Laboratory Watershed Function Science Focus Area (SFA), and NASA-JPL (Jet Propulsion Laboratory) Earth Surface Mineral Dust Source Investigation (EMIT) program. Between June 10 and July 18, 2025, the NEON AOP flight team collected high-resolution aerial imaging spectroscopy and Light Detection and Ranging (LiDAR) data over three domains: the Upper East River (CRBU), Almont Triangle (ALMO), and the Upper Taylor Basin (UPTA). In coordination with the flights, a field campaign acquired ground-truth observations, including observations of vegetation composition, foliar traits, forest demography, and subsurface properties in 18 core sampling areas within the domains. Additional surface water observations were taken at over 380 point locations. All CHESS campaign datasets can be found within the CHESS ESS-DIVE data portal: https://data.ess-dive.lbl.gov/portals/chess. Funding Acknowledgment: This research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (80NM0018D0004) and was funded by EMIT Extended Mission Phase E Science.

2018 NEON and 2025 CHESS Campaigns↗

Leaf gas exchange and fitted parameters, two sites in Panama, 2022

Photosynthetic CO2 response curves (ACi curves), light response curves (AQ curves), dark adapted dark respiration, conductance curves, and survey measurements for leaves measured in the Parque Natural Metropolitano (PNM) and Gamboa, Panama, from January to April 2022 are presented. Measurements were made on leaves from 46 different tree, shrub and liana species, from sunlit canopy and understory locations. Leaf area index from 8 vertical profiles at PNM are also included. The aim of this measurement campaign was three-fold: (i) to improve our understanding of the vertical variation in leaf-level water use efficiency; (ii) to develop an understanding of the sensitivity of stomata to changes in environmental conditions, especially light, humidity, and temperature; (iii) to improve models which can predict leaf traits from leaf contact spectral measurements. All the gas exchange data and metadata are presented in .csv files and complete instrument output are included in .zip folders. Data and metadata meet the ESS-DIVE leaf-level gas exchange reporting format requirements. The protocol details are provided as pdf documents. In addition to gas exchange data reported here these samples were also used for measurement of leaf optical properties, carbon and nitrogen content, and leaf mass per unit leaf area (LMA). These data can be cross linked using the unique sample ID and are provided in separate data packages.

54 ENVIRONMENTAL SCIENCES↗

Leaf reflectance, leaf transmittance and sky irradiance, at four sites in Panama, 2022

Paired leaf reflectance and transmittance data measured in Panama, at the Parque Natural Metropolitano (PNM), on Barro Colorado Island (BCI), at the San Lorenzo canopy crane site (SLZ), and in Gamboa, Panama from January to April 2022. Measurements were made on leaves from 57 different tree, shrub and liana species, from sunlit canopy and understory locations. Bark reflectance was also measured on the trunks of common tree species at the PNM and SLZ sites. Also included are irradiance measurements and leaf area index (LAI) from eight vertical profiles at PNM. The aim of these data was to refine our understanding of vertical trait and environmental variation in tropical forests, and to improve models which can predict leaf traits from leaf contact spectral measurements. All spectral data and metadata are presented in .csv files and complete instrument output are included in .zip folders. Protocol details are provided as pdf documents. In addition to spectral data described here, some of these samples were also used for measurement of leaf gas exchange, carbon and nitrogen content, and leaf mass per unit leaf area (LMA) these data can be cross linked using the unique sample ID and are provided in separate related data packages.

54 ENVIRONMENTAL SCIENCES↗

Foliar isotopic and elemental biochemistry and leaf mass per area (LMA), Parque Natural Metropolitano, Panama, 2022

Foliar N and C isotope composition, bulk elemental N and C composition, and leaf mass per area (LMA) for leaves sampled from the Parque Natural Metropolitano (PNM), Panama, from January to April 2022 are presented. Measurements were made on leaves from 17 different tree, shrub and liana species, from sunlit canopy and understory locations on 8 vertical profiles. Full sample details and leaf area index (LAI) from the vertical profiles at PNM are also included in the data package. The aim of this measurement campaign was two-fold: to improve our understanding of the vertical variation in leaf-level water use efficiency, and to improve models which can predict leaf traits from leaf contact spectral measurements. Biochemistry data and sample metadata are presented in .csv files. The original isotopic data report, which includes details about standards and data accuracy, is provided in .xlsx format. Data and metadata meet the ESS-DIVE reporting format requirements for file level metadata (FLMD) and comma separated values (csv). The protocol details are provided as pdf documents. In addition to foliar biochemistry data reported here these samples were also used for measurement of leaf gas exchange, and leaf optical properties. These data can be linked using the unique sample ID and are provided in separate data packages (NGT0192 and NGT0193).

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux US-xMB NEON Moab (MOAB)

This is the AmeriFlux version of the carbon flux data for the site US-xMB NEON Moab (MOAB). Site Description - The NEON MOAB site is located approximately 40 km south of the town of Moab and is characteristic of the Colorado Plateau. MOAB was selected with other sites that share a similar latitude in domains 10, 13, and 15, to assess dust generation, nutrient transport, and nutrient deposition. The western half of the site, including the tower airshed, is a grazed shrub land, often with pockets of barren soil. To the east, in the higher elevations, evergreen forests sit atop the mesas. Biological soil crust, dominated by cyanobacteria, is a living groundcover across the area.

Network), NEON (National Ecological Observatory↗

AmeriFlux US-xNW NEON Niwot Ridge Mountain Research Station (NIWO)

This is the AmeriFlux version of the carbon flux data for the site US-xNW NEON Niwot Ridge Mountain Research Station (NIWO). Site Description - The Niwot Ridge sits approximately 27 km west of Boulder, Colorado, and 6 km east of the Continental Divide. Topography, climate, and biota of the site are representative of Rocky Mountain alpine ecosystems, including extensive alpine tundra (mostly herbs, some shrubs and scree) and subalpine coniferous forests (Abies lasciocarpa and Picea engelmanii at higher elevations), talus slopes, wetlands and a variety of glacial landforms. Characterized by cold and relatively long winters, Niwot Ridge has an average annual temperature of 1.5°C and average annual precipitation of 800 mm. Most precipitation falls as snow and summer precipitation falls primarily during afternoon thunderstorms. Located on the eastern side of the Continental Divide at 3,000-3,500 m elevation, the site best captures chemical inputs produced along the Front Range and is well situated to observe other east/west flows across the Southern Rockies in conjunction with other NEON sites.

Network), NEON (National Ecological Observatory↗

AmeriFlux US-xSJ NEON San Joaquin Experimental Range (SJER)

This is the AmeriFlux version of the carbon flux data for the site US-xSJ NEON San Joaquin Experimental Range (SJER). Site Description - Located at The San Joaquin Experimental Range, in the western foothills of the Sierra Nevada, this 18.2 kilometer terrestrial field site is a mix of open woodlands, shrubs and grasslands with low density cattle grazing. SJER is an ecosystem research experimental area. It was originally conceived as a cooperative interdisciplinary research center to identify cost-effect methods of commercial livestock production in the annual grass-oak pine woodlands, while maintaining the integrity of the ecosystem. More recently, research objectives have expanded and diversified to include research projects making contributions to our knowledge of the patterns and processes working in this ecosystem.

Network), NEON (National Ecological Observatory↗

AmeriFlux US-Jo1 Jornada Experimental Range Bajada Site

This is the AmeriFlux version of the carbon flux data for the site US-Jo1 Jornada Experimental Range Bajada Site. Site Description - The Jornada Basin Experimental Range (JER) covers 783 km2 in the La Jornada del Muerto Plain of the northern Chihuahuan Desert and is located 20km of Las Cruces, NM. Extensive livestock grazing at the JER and througout the US Southwest was coincident with large-scale grassland deterioration and transition to shrubland begining in the 1800s. The JER was established n 1912 to investigate these rangeland changes and has since become a central location for understanding dryland ecology. This flux tower monitors CO2 and H2O dynamics in a representative shrubland on the piedmont slope (bajada) of the San Andreas mountains. The dominant shrubs are evergreen Larrea tridentata (Creosote) and winter-deciduous Prosopis glandulosa (Honey Mesquite). Other cover types include Flourensia cernua (tarbush) and patchy occurences of the grasses Muhlenbergia porteri (Bush Muhly) and Dasyochloa pulchella (Fluff Grass). The site is occasionally visited by stray domestic cattle, free-ranging introduced Oryx, and other native herbivores (Jack Rabbits, Desert Pronghorn). Soils at the site are Ustic Calciargids and parent material consists of limestone, other sedimentary rock, and some igneous rock. Virtual Site Visit: https://youtu.be/v1uJCKuicqs​

Tweedie, Craig↗

AmeriFlux CA-DB2 Delta Burns Bog 2

This is the AmeriFlux version of the carbon flux data for the site CA-DB2 Delta Burns Bog 2. Site Description - The Burns Bog Ecological Conservancy Area (BBECA) in the metro Vancouver area presents a unique opportunity for insight into greenhouse gas dynamics post restoration. The bog was significantly disturbed for peat mining, development and agriculture over the last century, however since 2005 there has been both active restoration and natural regeneration occurring within the bog. Hence areas of bog are at varying stages of ecological recovery. This site is a Pine-Sphagnum low shrub site characteristic of a later successional stage. Conversely, CA-DBB, another AmeriFlux site in BBECA, is a Beakrush-Sphagnum site characteristic of an earlier successional stage.

Knox, Sara↗

AmeriFlux MX-Ray Rayon, monsoon subtropical shrubland

This is the AmeriFlux version of the carbon flux data for the site MX-Ray Rayon, monsoon subtropical shrubland. Site Description - Precipitation during the NAM season (July–September) is approximately 76% of the annual total at the site (Vivoni, Rodríguez, et al., 2010) leading to a peak in vegetation greenness in the month of August (Méndez‐Barroso et al., 2009). Site vegetation is composed of drought‐deciduous trees and shrubs, including torote papelío (Jatropha cordata), tree ocotillo (Fouquieria macdougalii), acacia (Acacia cochliacantha), palo verde (Parkinsonia praecox), Mexican mimosa (Mimosa distachya), and velvet mesquite (Prosopis velutina) as well as organpipe cactus (Stenocereus thurberi).

Watts, Chistopher J.↗

AmeriFlux FLUXNET-1F US-Me2 Metolius mature ponderosa pine

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Me2 Metolius mature ponderosa pine. This is the FLUXNET version of the carbon flux data for the site US-Me2 Metolius mature ponderosa pine produced by applying the standard ONEFlux (1F) software. Site Description - Site Description before Fire (January, 2002 - August, 2020): The mean stand age is 71 years old and the stand age of the oldest 10% of trees is about 108 years old. This site is one of the Metolius core cluster sites with different age and disturbance classes and part of the AmeriFlux network. The overstory is almost exclusively composed of ponderosa pine trees (Pinus ponderosa Doug. Ex P. Laws) with a few scattered incense cedars (Calocedrus decurrens (Torr.) Florin) and has a peak leaf area index (LAI) of 2.1 m2 m-2. Tree height is relatively homogeneous at about 18 m, and the mean tree density is approximately 339 trees ha-1 (Irvine et al., 2008). The understory is sparse with an LAI of 0.2 m2 m-2 and primarily composed of bitterbrush (Purshia tridentata (Push) DC.) and greenleaf manzanita (Arctostaphylos patula Greene). Soils at the site are sandy (69%/24%/7% sand/silt/clay at 0–0.2 m depth and 66%/27%/7% at 0.2–0.5 m depth, and 54%/ 35%/11% at 0.5–1.0 m depth), freely draining with a soil depth of approximately 1.5 m (Irvine et al., 2008; Law et al., 2001b; Schwarz et al., 2004). Green Ridge Fire: On August 20, 2020, the Green Ridge Fire burned through Us-Me2. The fire was ignited by lightning on August 16th, and grew rapidly to the east over the first few days driven by strong, downslope (westerly) afternoon winds. Fire behavior and observed fire effects were highly heterogeneous due to the localized wind pattern carrying the flaming head of the fire forward, and the efforts being made by suppression resources to contain the fire. The site experienced the full range of fire effects, from <1 m high surface fire that charred litter and duff and only consumed shrubs and herbaceous material to full tree (>15 m) crown fire that consumed 100% of needles, small limbs, and surface fuels at high intensity, leaving only ash and bare soil post-fire. Salvage Logging: From late March to late April 2021, salvage logging by the landowner occurred at the site. Almost all trees within the flux footprint were logged except a small area with lower burn severity, where sap flow and automatic soil respiration measurements are continued since the fire. In August 2022 the primary flux system was moved from the top of the damaged tall tower to a nearby shorter tower centering on the salvage/regenerating footprint.

Hanson, Chad↗

AmeriFlux FLUXNET-1F CA-DB2 Delta Burns Bog 2

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-DB2 Delta Burns Bog 2. This is the FLUXNET version of the carbon flux data for the site CA-DB2 Delta Burns Bog 2 produced by applying the standard ONEFlux (1F) software. Site Description - The Burns Bog Ecological Conservancy Area (BBECA) in the metro Vancouver area presents a unique opportunity for insight into greenhouse gas dynamics post restoration. The bog was significantly disturbed for peat mining, development and agriculture over the last century, however since 2005 there has been both active restoration and natural regeneration occurring within the bog. Hence areas of bog are at varying stages of ecological recovery. This site is a Pine-Sphagnum low shrub site characteristic of a later successional stage. Conversely, CA-DBB, another AmeriFlux site in BBECA, is a Beakrush-Sphagnum site characteristic of an earlier successional stage.

Knox, Sara↗

AmeriFlux FLUXNET-1F CA-SF1 Saskatchewan - Western Boreal, forest burned in 1977

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-SF1 Saskatchewan - Western Boreal, forest burned in 1977. This is the FLUXNET version of the carbon flux data for the site CA-SF1 Saskatchewan - Western Boreal, forest burned in 1977 produced by applying the standard ONEFlux (1F) software. Site Description - Regenerated jack pine (Pinus banksiana) following fire in 1977; canopy height 6 m and LAI = 2.8. Some black spruce understory developing. Trees tend to be clumpy, with some clear spaces that can be easily walked thorugh, and other areas are thick. Fire killed coarse woody debris on the ground, that is soft and decomposing. Very few perched trunks. Understory are short shrubs such as Vaccinium and Arctostaphylus uva-ursi.

Amiro, Brian↗

AmeriFlux FLUXNET-1F US-Jo1 Jornada Experimental Range Bajada Site

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Jo1 Jornada Experimental Range Bajada Site. This is the FLUXNET version of the carbon flux data for the site US-Jo1 Jornada Experimental Range Bajada Site produced by applying the standard ONEFlux (1F) software. Site Description - The Jornada Basin Experimental Range (JER) covers 783 km2 in the La Jornada del Muerto Plain of the northern Chihuahuan Desert and is located 20km of Las Cruces, NM. Extensive livestock grazing at the JER and througout the US Southwest was coincident with large-scale grassland deterioration and transition to shrubland begining in the 1800s. The JER was established n 1912 to investigate these rangeland changes and has since become a central location for understanding dryland ecology. This flux tower monitors CO2 and H2O dynamics in a representative shrubland on the piedmont slope (bajada) of the San Andreas mountains. The dominant shrubs are evergreen Larrea tridentata (Creosote) and winter-deciduous Prosopis glandulosa (Honey Mesquite). Other cover types include Flourensia cernua (tarbush) and patchy occurences of the grasses Muhlenbergia porteri (Bush Muhly) and Dasyochloa pulchella (Fluff Grass). The site is occasionally visited by stray domestic cattle, free-ranging introduced Oryx, and other native herbivores (Jack Rabbits, Desert Pronghorn). Soils at the site are Ustic Calciargids and parent material consists of limestone, other sedimentary rock, and some igneous rock. Virtual Site Visit: https://youtu.be/v1uJCKuicqs​

Tweedie, Craig↗

AmeriFlux FLUXNET-1F US-xMB NEON Moab (MOAB)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-xMB NEON Moab (MOAB). This is the FLUXNET version of the carbon flux data for the site US-xMB NEON Moab (MOAB) produced by applying the standard ONEFlux (1F) software. Site Description - The NEON MOAB site is located approximately 40 km south of the town of Moab and is characteristic of the Colorado Plateau. MOAB was selected with other sites that share a similar latitude in domains 10, 13, and 15, to assess dust generation, nutrient transport, and nutrient deposition. The western half of the site, including the tower airshed, is a grazed shrub land, often with pockets of barren soil. To the east, in the higher elevations, evergreen forests sit atop the mesas. Biological soil crust, dominated by cyanobacteria, is a living groundcover across the area.

Network), NEON (National Ecological Observatory↗

AmeriFlux US-Sag Sag River

This is the AmeriFlux version of the carbon flux data for the site US-Sag Sag River. Site Description - This tower is located non-acidic moist tundra located in northeastern part of Kuparuk Basin (Sagavanirktok River). Mesic tundra consist of vascular plant, moss and a few short shrubs.

Miyata, Akira↗

AmeriFlux FLUXNET-1F US-Dix Fort Dix

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Dix Fort Dix. This is the FLUXNET version of the carbon flux data for the site US-Dix Fort Dix produced by applying the standard ONEFlux (1F) software. Site Description - The Fort Dix site is located in the upland forests of the New Jersey Pine Barrens, the largest continuous forested landscape on the Northeastern coastal plain. Upland forests occupy 62% of the 1.1 million acre Pine Barrens and can be divided into three dominant stand types, Oak/Pine (19.1%), Pine/Oak (13.1%), and Pitch Pine/Scrub oak (14.3%). The majority of mature upland forests are the product of regeneration following late 19th century logging and charcoaling activities. Gypsy moths first appeared in the Pine Barrens of New Jersey in 1966. Since the time of arrival, the upland forest stands have undergone several episodes of defoliation, the most significant occurred in 1972, 1981, and 1990. In recent years, the overstory oaks and understory oaks and shrubs of the Fort Dix stand, underwent two periods of defoliation by Gypsy moth, in 2006 and 2007. During these two years, maximum leaf area reached only 70% of the 2005 summer maximum.

Clark, Kenneth↗