Characterizing human[alpha] -1,6-fucosyltransferase (FUT8) substrate specificity and structural simi
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Using a suite of hydrodynamical simulations with cold dark matter, baryons, and neutrinos, we present a detailed study of the effect of massive neutrinos on the 1-D and 3-D flux power spectra of the Lyman-α (Lyα) forest. The presence of massive neutrinos in cosmology induces a scale- and time-dependent suppression of structure formation that is strongest on small scales. Measuring this suppression is a key method for inferring neutrino masses from cosmological data, and is one of the main goals of ongoing and future surveys like eBOSS, DES, LSST, Euclid or DESI . The clustering in the Lyα forest traces the quasi-linear power at late times and on small scales. In combination with observations of the cosmic microwave background, the forest therefore provides some of the tightest constraints on the sum of the neutrino masses. However there is a well-known degeneracy between Σmν and the amplitude of perturbations in the linear matter power spectrum. We study the corresponding degeneracy in the 1-D flux power spectrum of the Lyα forest, and for the first time also study this degeneracy in the 3-D flux power spectrum. We show that the non-linear effects of massive neutrinos on the Lyα forest, beyond the effect of linear power amplitude suppression, are negligible, and this degeneracy persists in the Lyα forest observables to a high precision. Here, we discuss the implications of this degeneracy for choosing parametrisations of the Lyα forest for cosmological analysis.
We present the Lyssa suite of high-resolution cosmological simulations of the Lyman-α forest designed for cosmological analyses. These 18 simulations have been run using the Nyx code with 40963 hydrodynamical cells in a 120 Mpc (∼ 81 Mpc/h) comoving box and individually provide sub-percent level convergence of the Lyman-α forest 1d flux power spectrum. We build a Gaussian process emulator for the Lyssa simulations in the lym1d likelihood framework to interpolate the power spectrum at arbitrary parameter values. We validate this emulator based on leave-one-out tests and based on the parameter constraints for simulations outside of the training set. We also perform comparisons with a previous emulator, showing a percent level accuracy and a good recovery of the expected cosmological parameters. Using this emulator we derive constraints on the linear matter power spectrum amplitude and slope parameters A Lyα and n Lyα . While the best-fit Planck ΛCDM model has A Lyα = 8.79 and n Lyα = -2.363, from DR14 eBOSS data we find that A Lyα < 7.6 (95% CI) and n Lyα = -2.369 ± 0.008. The low value of A Lyα , in tension with Planck, is driven by the correlation of this parameter with the mean transmission of the Lyman-α forest. This tension disappears when imposing a well-motivated external prior on this mean transmission, in which case we find A Lyα = 9.8 ± 1.1 in accordance with Planck.
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We present observations with the Cosmic Origins Spectrograph onboard the Hubble Space Telescope of seven compact low-mass star-forming galaxies at redshifts, z, in the range 0.3161–0.4276, with various O 3 Mg 2 = [O iii] λ5007/Mg ii λ2796+2803 and Mg 2 = Mg ii λ2796/Mg ii λ2803 emission-line ratios. We aim to study the dependence of leaking Lyman continuum (LyC) emission on the characteristics of Mg ii emission together with the dependencies on other indirect indicators of escaping ionizing radiation. LyC emission with escape fractions f esc (LyC) = 3.1–4.6 percent is detected in four galaxies, whereas only 1σ upper limits of f esc (LyC) in the remaining three galaxies were derived. A strong narrow Lyα emission line with two peaks separated by V sep ~ 298–592 km s -1 was observed in four galaxies with detected LyC emission and very weak Lyα emission is observed in galaxies with LyC non-detections. Our new data confirm the tight anticorrelation between f esc (LyC) and V sep found for previous low-redshift galaxy samples. V sep remains the best indirect indicator of LyC leakage among all considered indicators. It is found that escaping LyC emission is detected predominantly in galaxies with Mg 2 ≳ 1.3. A tendency of an increase of f esc (LyC) with increasing of both the O 3 Mg 2 and Mg 2 is possibly present. However, there is substantial scatter in these relations not allowing their use for reliable prediction of f esc (LyC).
At z ≲ 1, shock heating caused by large-scale velocity flows and possibly violent feedback from galaxy formation, converts a significant fraction of the cool gas (T ~ 10 4 K) in the intergalactic medium (IGM) into warm–hot phase (WHIM) with T > 10 5 K, resulting in a significant deviation from the previously tight power-law IGM temperature–density relationship, T = T 0 (P/$\bar{p}$) γ-1 . This study explores the impact of the WHIM on measurements of the low-z IGM thermal state, [T 0 , γ], based on the b–NH 1 distribution of the Ly α forest. Exploiting a machine learning-enabled simulation-based inference method trained on Nyx hydrodynamical simulations, we demonstrate that [T 0 , γ] can still be reliably measured from the b–NH 1 distribution at z = 0.1, notwithstanding the substantial WHIM in the IGM. To investigate the effects of different feedback, we apply this inference methodology to mock spectra derived from the IllustrisTNG and Illustris simulations at z = 0.1. The results suggest that the underlying [T 0 , γ] of both simulations can be recovered with biases as low as |Δlog(T 0 /K)| ≲ 0.05 dex, |Δγ| ≲ 0.1, smaller than the precision of a typical measurement. Given the large differences in the volume-weighted WHIM fractions between the three simulations (Illustris 38 percent, IllustrisTNG 10 percent, and Nyx 4 per cent), we conclude that the b–N H1 distribution is not sensitive to the WHIM under realistic conditions. Finally, we investigate the physical properties of the detectable Ly α absorbers, and discover that although their T and Δ distributions remain mostly unaffected by feedback, they are correlated with the photoionization rate used in the simulation.
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We present the baryon acoustic oscillation (BAO) measurements with the Lyman-𝛼 (Ly𝛼) forest from the second data release (DR2) of the Dark Energy Spectroscopic Instrument (DESI) survey. Our BAO measurements include both the autocorrelation of the Ly𝛼 forest absorption observed in the spectra of high-redshift quasars and the cross-correlation of the absorption with the quasar positions. The total sample size is approximately a factor of 2 larger than the DR1 dataset, with forest measurements in over 820,000 quasar spectra and the positions of over 1.2 million quasars. We describe several significant improvements to our analysis in this paper, and two supporting papers describe improvements to the synthetic datasets that we use for validation and how we identify damped Ly𝛼 absorbers. Our main result is that we have measured the BAO scale with a statistical precision of 1.1% along and 1.3% transverse to the line of sight, for a combined precision of 0.65% on the isotropic BAO scale at 𝑧 eff =2.33. This excellent precision, combined with recent theoretical studies of the BAO shift due to nonlinear growth, motivated us to include a systematic error term in Ly𝛼 BAO analysis for the first time. We measure the ratios 𝐷 𝐻 (𝑧 eff )/𝑟 𝑑 = 8.632 ± 0.098 ± 0.026 and 𝐷 𝑀 (𝑧 eff )/𝑟 𝑑 = 38.99 ± 0.52 ± 0.12, where 𝐷 𝐻 = 𝑐/𝐻(𝑧) is the Hubble distance, 𝐷 𝑀 is the transverse comoving distance, 𝑟 𝑑 is the sound horizon at the drag epoch, and we quote both the statistical and the theoretical systematic uncertainty. The companion paper presents the BAO measurements at lower redshifts from the same dataset and the cosmological interpretation.
Axisymmetric Alfvén eigenmodes have been observed at the plasma edge in deuterium-tritium (D-T) tokamak plasmas externally heated only by neutral beam injection in JET. The modes were detected only in D-T plasmas, not in pure D plasmas, indicating excitation by fusion-born 𝛼 particles. The presence of the axisymmetric mode suggests that the modes were driven by positive energy gradients in the 𝛼 particle distribution rather than radial gradients. The modes are driven by counter-current passing 𝛼 particles with large orbit widths, allowing core-born 𝛼 particles to interact with modes at the plasma edge. This reveals an excitation mechanism arising from positive energy gradients produced by the minimum energy required to confine particles at the edge, relevant to all burning plasmas.
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Recent examination of the cerium Hugoniot with pyrometry and x-ray diffraction (XRD) has revealed a narrow solid-liquid two-phase region. It has been suggested that nonequilibrium melting may be occurring along the Ce Hugoniot, with either melt kinetics or a sluggish α-ε transition impeding the transition. In particular, the kinetics of the α-ε is unknown and the location of the phase boundary is in dispute. Static measurements suggest a nearly vertical phase boundary that intersects the Hugoniot at 6–7 GPa. This lies in direct conflict with dynamic measurements along the Hugoniot observing α-Ce through incipient melt. This work presents dynamic experiments using XRD to examine the behavior of the α-ε phase transition. The results show that the α-ε phase transition occurs through a tetragonal distortion, with the transition beginning at temperatures below the solid Hugoniot. Following the initial deviation from an ideal fcc structure, the c/a ratio is found to gradually increase with no steady value observed in the ε phase within the range of these experiments (below 17 GPa). Multiple diffraction patterns captured during the peak stress state show no significant change in c/a ratio prior to uniaxial release, upon which Ce reverts to an fcc structure. Furthermore, the results indicate that the α-ε transition occurs rapidly, both on loading and release. An examination of the c/a ratio with increasing temperatures suggests 11.5 GPa as a lower bound for the location of the α-ε-liquid triple point.
We report that modern ab initio theory combined with high-quality nucleon-nucleon (NN) and three-nucleon (3N) interactions from chiral effective field theory (EFT) can provide a predictive description of low-energy light-nuclei reactions relevant for astrophysics and fusion-energy applications. However, the high cost of computations has so far impeded a complete analysis of the uncertainty budget of such calculations. Starting from NN potentials up to fifth order (N 4 LO) combined with leading-order 3N forces, we study how the order-by-order convergence of the chiral expansion and confidence intervals for the 3N contact and contact-plus-one-pion-exchange low-energy constants (c E and c D ) contribute to the overall uncertainty budget of many-body calculations of neutron- 4 He (n-α) elastic scattering. We compute structure and reaction observables for three-, four-, and five-nucleon systems within the ab initio frameworks of the no-core shell model and no-core shell model with continuum. Using a small set of design runs, we construct a Gaussian process model (GPM) that acts as a statistical emulator for the theory. With this, we gain insight into how uncertainties in the 3N low-energy constants propagate throughout the calculation and determine the Bayesian posterior distribution of these parameters with Markov-Chain Monte Carlo. We find rapidly converging n-α phase shifts with respect to the chiral order. With the adopted leading-order 3N force, calculations based on the NN interaction at N 4 LO of Entem, Machleidt, and Nosyk are unable to reproduce the experimental phase shifts in the 3/2 - channel within the estimated chiral truncation errors. Closer agreement with empirical data is found when using an older parametrization of the NN interaction at order N 3 LO, and the position and width of the P-wave resonances can be used to reduce the uncertainty of the 3N low-energy constants. The present results point to a lack of spin-orbit strength when the newer parametrization of the chiral NN force up to fifth order is combined with the leading-order 3N force. The inclusion of higher-order 3N-force terms may be required to recover the missing strength. GPMs can act as fast and accurate emulators of ab initio many-body calculations of low-energy scattering and reactions of light nuclei, opening the way to a robust quantification of theoretical uncertainties grounded in the description of the underlying chiral Hamiltonian.
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