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DOE OSTI2020

Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET

To further understand the transcriptome, new tools capable of measuring folding, interactions, and localization of RNA are needed. Although Förster resonance energy transfer (FRET) is an angle- and distance-dependent phenomenon, the majority of FRET measurements have been used to report distances, by assuming rotationally averaged donor–acceptor pairs. Angle-dependent FRET measurements have proven challenging for nucleic acids due to the difficulties in incorporating fluorophores rigidly into local substructures in a biocompatible manner. Fluorescence turn-on RNA aptamers are genetically encodable tags that appear to rigidly confine their cognate fluorophores, and thus have the potential to report angular-resolved FRET. In this work, we use the fluorescent aptamers Broccoli and Mango-III as donor and acceptor, respectively, to measure the angular dependence of FRET. Joining the two fluorescent aptamers by a helix of variable length allowed systematic rotation of the acceptor fluorophore relative to the donor. FRET oscillated in a sinusoidal manner as a function of helix length, consistent with simulated data generated from models of oriented fluorophores separated by an inflexible helix. Analysis of the orientation dependence of FRET allowed us to demonstrate structural rigidification of the NiCo riboswitch upon transition metal-ion binding. This application of fluorescence turn-on aptamers opens the way to improved structural interpretation of ensemble and single-molecule FRET measurements of RNA.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Entanglement maximization in low-energy neutron-proton scattering

The entanglement properties of neutron-proton scattering are investigated using a measure that counts the number of entangled pairs produced by the action of a scattering operator on a given initial neutron-proton state. All phase shifts relevant for scattering at laboratory energies up to 350 MeV are used. Entanglement is found to depend strongly on the initial state. Entanglement is maximized in very low energy scattering if the initial spin state is | ↑ ↓ >, but not if the initial state is | ↑ ↑ > . At such energies the Hamiltonian obeys Wigner SU(4) symmetry, and an entanglement maximum is a sign of that symmetry. At higher energies the angular dependence of entanglement is strong and the entanglement is large for many scattering angles. Furthermore, the tensor force is shown to play a significant role in producing entanglement at laboratory kinetic energies greater than about 50 MeV.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2024

Three-flavor, full momentum space neutrino spin oscillations in neutron star mergers

In the presence of anisotropic neutrino and antineutrino fluxes, the quantum kinetic equations drive coherent oscillations in neutrino helicity, frequently referred to as spin oscillations. These oscillations depend directly on the absolute mass scale and Majorana phase, but are usually too transient to produce important effects. In this paper we present a full momentum-space analysis of Majorana neutrino spin oscillations in a snapshot of a three-dimensional neutron star merger simulation. We find an interesting angular dependence that allows for that resonant and adiabatic oscillations to occur along specific directions in a large volume of the merger remnant. The solid angle spanned by these directions is extremely narrow in general. We then analyze spin transformation in the presence of flavor transformation by characterizing how the effect's resonance and timescale change during a fast flavor instability. For this analysis, we derive a generalized resonance condition that poses a restrictive requirement for resonance to exist in any flavor channel. Finally, we determine that spin oscillations at all locations in the merger snapshot have a length scale that is too large for significant oscillations to be expected even where there exist resonant and adiabatic directions.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

Search for patterns by combining cosmic-ray energy and arrival directions at the Pierre Auger Observatory

Energy-dependent patterns in the arrival directions of cosmic rays are searched for using data of the Pierre Auger Observatory. We investigate local regions around the highest-energy cosmic rays with E ≥ 6×10 19 eV by analyzing cosmic rays with energies above E ≥ 5×10 18 eV arriving within an angular separation of approximately 15°. We characterize the energy distributions inside these regions by two independent methods, one searching for angular dependence of energy-energy correlations and one searching for collimation of energy along the local system of principal axes of the energy distribution. No significant patterns are found with this analysis. As a result, the comparison of these measurements with astrophysical scenarios can therefore be used to obtain constraints on related model parameters such as strength of cosmic-ray deflection and density of point sources.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2018

Angular and Spectral Distributions of the Broadband Radiation of a Photoemission Source

Angular dependence of the electric field of electromagnetic wave generated by a rectangular photoemission source with the given surface density of dipole moment is determined. The dipole emission is initiated by the wave that propagates along the surface at a superluminal phase velocity. The spectral distribution of the radiation is determined, and the angular distribution of the radiation energy is calculated.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2018

Study of the Mechanism of the {sup 13}C(d, p){sup 14}C Reaction at E{sub d} = 15.3 MeV

The angular dependences of the differential cross sections of the {sup 13}C(d, p){sup 14}C reaction at the deuteron energy of 15.3MeV are presented according tomeasurements for the cases where the final nucleus is produced in the ground state (0{sup +}) and in the 1{sup −} excited state at 6.094 MeV. The angular distribution of protons corresponding to the sum 0{sup +} (6.589 MeV) + 3{sup −} (6.728 MeV) + 0{sup −} (6.903 MeV) of states of the {sup 14}C nucleus that were not separated experimentally is also obtained. These experimental results are compared with their counterparts calculated by means of the FRESCO code for the mechanisms of neutron stripping and sequential neutron and dineutron transfer. The neutron and dineutron spectroscopic amplitudes are calculated for pure and mixed shell configurations. The best set of optical-potential parameters is determined for the entrance and exit reaction channels. It is shown that the neutron-stripping mechanismpermits describing themeasured angular distributions for all states of the {sup 14}C nucleus that were investigated here.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2012

Single and Double Spin Asymmetry Measurements in Semi-Inclusive and Inclusive DIS on Polarized He-3

Jefferson Lab experiment E06-010 measured the target-single spin (SSA) and double spin asymmetries (DSA) in semi-inclusive deep inelastic pion electroproduction on a transversely polarized He-3 target. The measured asymmetry (A_UT) is sensitive to the nucleon transversity and Sivers distribution functions, whereas the measured A_LT asymmetry is related to the transverse momentum dependent PDF g_1T. The kinematics were chosen to be in the valence quark region with x ~ 0.16-0.35 and Q^2 ~ 1.4-2.7 GeV^2. The Collins moment, which is sensitive to transversity, the Sivers and A_LT moments, which are sensitive to the orbital motion of the quarks, were extracted using the azimuthal angular dependence of the measured asymmetries. These data, when combined with the data from other experiments on transversely polarized proton and deuteron targets, will help in extracting the nucleon transverse momentum dependent distribution functions via a global analysis. These semi-inclusive results will be presented and discussed along with the preliminary results for the inclusive single spin asymmetries.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2020

Development of a predictive capability of short-pulse laser-driven broadband x-ray radiography

High intensity, short-pulse laser interaction with a solid metal target produces broadband hard x-rays potentially for various applications of x-ray radiography. In this work, experimental benchmarking of numerical modelling for short-pulse laser-driven broadband x-ray radiography is presented. Angular dependent x-ray spectra are first calculated with a hybrid particle-in-cell code, Large Scale Plasma (LSP), using fast electron parameters inferred from an analysis of measured bremsstrahlung signals. Subsequently, a calculated x-ray spectrum in the direction of radiography is used in photon transport calculations using a Monte Carlo code, Particle and Heavy Ion Transport code System (PHITS), to simulate a radiographic image including a modelled 3D test object, an x-ray attenuation filter and an image plate detector. Simulated radiographic images are compared with measurements obtained in an experiment using a 50-TW Leopard short-pulse laser at the University of Nevada Reno. Results show that simulations reproduce the experimental images well for three different attenuation filters (plastic, aluminium, and brass), while 1D transmission profiles for the plastic and aluminium filters are quantitatively in good agreement. The modelling approach established in this work could be used as a predictive tool to simulate radiographic images of complex 3D solid objects at any arbitrary angular position or to optimize experimental components such as the source spectrum, x-ray attenuation filters and a detector type depending on a radiographic object without carrying out radiographic experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

NASA NTRS1992

Angle-dependent Green's functions for relativistic Compton reflection

Using analytic methods, we derived the first-order Green's functions, in terms of the observing angle, for the reflected spectra after a single Compton scattering of relativistic photons by a plane-parallel semiinfinite medium of cold electrons. We also calculated the total Green's functions for incident photons of 511 keV, using Monte Carlo methods. We show that both the first-order and total Green's functions have strong angular dependences and that the first-order Green's functions play a dominant role in determining the properties of the total reflected spectra.

Hua, Xin-Min↗

NASA NTRS1994

Evaluating the design of an earth radiation budget instrument with system simulations. Part 2: Minimization of instantaneous sampling errors for CERES-I

Much of the new record of broadband earth radiation budget satellite measurements to be obtained during the late 1990s and early twenty-first century will come from the dual-radiometer Clouds and Earth's Radiant Energy System Instrument (CERES-I) flown aboard sun-synchronous polar orbiters. Simulation studies conducted in this work for an early afternoon satellite orbit indicate that spatial root-mean-square (rms) sampling errors of instantaneous CERES-I shortwave flux estimates will range from about 8.5 to 14.0 W/m on a 2.5 deg latitude and longitude grid resolution. Rms errors in longwave flux estimates are only about 20% as large and range from 1.5 to 3.5 W/sq m. These results are based on an optimal cross-track scanner design that includes 50% footprint overlap to eliminate gaps in the top-of-the-atmosphere coverage, and a 'smallest' footprint size to increase the ratio in the number of observations lying within to the number of observations lying on grid area boundaries. Total instantaneous measurement error also depends on the variability of anisotropic reflectance and emission patterns and on retrieval methods used to generate target area fluxes. Three retrieval procedures from both CERES-I scanners (cross-track and rotating azimuth plane) are used. (1) The baseline Earth Radiaton Budget Experiment (ERBE) procedure, which assumes that errors due to the use of mean angular dependence models (ADMs) in the radiance-to-flux inversion process nearly cancel when averaged over grid areas. (2) To estimate N, instantaneous ADMs are estimated from the multiangular, collocated observations of the two scanners. These observed models replace the mean models in computation of satellite flux estimates. (3) The scene flux approach, conducts separate target-area retrievals for each ERBE scene category and combines their results using area weighting by scene type. The ERBE retrieval performs best when the simulated radiance field departs from the ERBE mean models by less than 10%. For larger perturbations, both the scene flux and collocation methods produce less error than the ERBE retrieval. The scene flux technique is preferable, however, because it involves fewer restrictive assumptions.

Stowe, Larry↗

NASA NTRS1993

Evaluating the design of an Earth Radiation Budget Instrument with systen simulations. Part 1: Instantaneous estimates

A set of system simulations has been performed to evaluate candidate scanner designs for an Earth Radiation Budget Instrument (ERBI) for the Earth Observing System (EOS) of the late 1990s. Five different instruments are considered: (1) the Active Cavity Array (ACA), (2) the Clouds and Earth's Radiant Energy System-Instrument (CERES-I), (3) the Conically Scanning Radiometer (CSR), (4) the Earth Radiation Budget Experiment Cross-Track Scanner (ERBE), and (5) the Nimbus-7 Biaxial Scanner (N7). Errors in instantaneous, top-of-the-atmosphere (TOA) satellite flux estimates are assumed to arise from two measurement problems: the sampling of space over a given geographic domain, and sampling in angle about a given spatial location. When angular sampling errors vanish due to the application of correct angular dependence models (ADMs) during inversion, the accuracy of each scanner design is determined by the instrument's ability to map the TOA radiance field in a uniform manner. In this regard, the instruments containing a cross-track scanning component (CERES-I and ERBE) do best. As errors in ADMs are encountered, cross-track instruments incur angular sampling errors more rapidly than biaxial instruments (N7, ACA, and CSR) and eventually overtake the biaxial designs in their total error amounts. A latitude bias (north-south error gradient) in the ADM error of cross-track instruments also exists. This would be objectionable when ADM errors are systematic over large areas of the globe. For instantaneous errors, however, cross-track scanners outperform biaxial or conical scanners for 2.5 deg latitude x 2.5 deg longitude target areas, providing that the ADM error is less than or equal to 30%. A key issue is the amount of systematic ADM error (departures from the mean models) that is present at the 2.5 deg resolution of the ERBE target areas. If this error is less than 30%, then the CERES-I, ERBE, and CSR, in order of increasing error, provide the most accurate instantaneous flux estimates, within 2-3 W/sq m of each other in reflected shortwave flux. The magnitude of this error is near the 10 W/sq m accuracy requirement of the user community. Longwave flux errors have been found to have the same space and time characteristics as errors in shortwave radiation, but only about 25% as large.

Stowe, Larry↗

DOE OSTI2018

Jet angularity measurements for single inclusive jet production

We study jet angularity measurements for single-inclusive jet production at the LHC. Jet angularities depend on a continuous parameter a allowing for a smooth interpolation between different traditional jet shape observables. We establish a factorization theorem within Soft Collinear Effective Theory (SCET) where we consistently take into account in- and out-of-jet radiation by making use of semi-inclusive jet functions. For comparison, we elaborate on the differences to jet angularities measured on an exclusive jet sample. All the necessary ingredients for the resummation at next-to-leading logarithmic (NLL) accuracy are presented within the effective field theory framework. We expect semiinclusive jet angularity measurements to be feasible at the LHC and we present theoretical predictions for the relevant kinematic range. In addition, we investigate the potential impact of jet angularities for quark-gluon discrimination.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2019

Microwave Magnetic Absorption in HgSe with Co and Ni Impurities

Features of magnetic-field-dependent microwave absorption in HgSe samples doped with Co and Ni impurities in different concentrations are investigated. The electron-spin resonance spectra of weakly coupled Co atoms and peculiarities of the magnetic-absorption variation in a magnetic field passing through the zero value are established. The main parameters of the electron-spin resonance spectra and temperature and angular dependences of microwave absorption in weak fields are determined.

36 MATERIALS SCIENCE↗

DOE OSTI2018

Comparison of approximate solutions to the phonon Boltzmann transport equation with the relaxation time approximation: Spherical harmonics expansions and the discrete ordinates method

In this study, the phonon Boltzmann transport equation is used to analyze model problems in one and two spatial dimensions, under transient and steady-state conditions. New, explicit solutions are obtained by using the P 1 and P 3 approximations, based on expansions in spherical harmonics, and are compared with solutions from the discrete ordinates method. For steady-state energy transfer, it is shown that analytic expressions derived using the P 1 and P 3 approximations agree quantitatively with the discrete ordinates method, in some cases for large Knudsen numbers, and always for Knudsen numbers less than unity. However, for time-dependent energy transfer, the P N solutions differ qualitatively from converged solutions obtained by the discrete ordinates method. Although they correctly capture the wave-like behavior of energy transfer at short times, the P 1 and P 3 approximations rely on one or two wave velocities, respectively, yielding abrupt, step-changes in temperature profiles that are absent when the angular dependence of the phonon velocities is captured more completely. It is shown that, with the gray approximation, the P 1 approximation is formally equivalent to the so-called “hyperbolic heat equation.” In conclusion, these results support the use of the P N approximation to find solutions to the phonon Boltzmann transport equation for steady-state conditions. Such solutions can be useful in the design and analysis of devices that involve heat transfer at nanometer length scales, where continuum-scale approaches become inaccurate.

36 MATERIALS SCIENCE↗

DOE OSTI2013

The Kohn-Luttinger mechanism and phase diagram of the superconducting state in the Shubin-Vonsovsky model

Using the Shubin-Vonsovsky model in the weak-coupling regime W > U > V (W is the bandwidth, U is the Hubbard onsite repulsion, and V is the Coulomb interaction at neighboring sites) based on the Kohn-Luttinger mechanism, we determined the regions of the existence of the superconducting phases with the d{sub xy}, p, s, and <##> } d } x 2 − y 2 $ d{sub {x^2 - y^2 }} $ d{sub x{sup 2}−y{sup 2}} </##> symmetry types of the order parameter. It is shown that the effective interaction in the Cooper channel considerably depends not only on single-site but also on intersite Coulomb correlations. This is demonstrated by the example of the qualitative change and complication of the phase diagram of the superconducting state. The superconducting (SC) phase induction mechanism is determined taking into account polarization contributions in the second-order perturbation theory in the Coulomb interaction. The results obtained for the angular dependence of the superconducting gap in different channels are compared with angule-resolved photoemission spectroscopy (ARPES) results. The influence of long-range hops in the phase diagram and critical superconducting transition temperature in different channels is analyzed. The conditions for the appearance of the Kohn-Luttinger superconductivity with the <##> } d } x 2 − y 2 $ d{sub {x^2 - y^2 }} $ d{sub x{sup 2}−y{sup 2}} </##> symmetry and high critical temperatures T{sub c} ∼ 100 K near the half-filling are determined.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2021

Temperature dependence of field-response mechanisms in 0.4Ba(Zr 0.2 Ti 0.8 )O 3 –0.6(Ba 0.7 Ca 0.3 )TiO 3

Understanding the temperature dependence of how ferroelectric materials respond to electric fields is critical for determining how best to use these materials in applications. In this study, temperature dependent in situ x-ray diffraction is used to study how field-response mechanism Ba ( Zr 0.2 Ti 0.8 ) O 3 – x ( Ba 0.7 Ca 0.3 ) TiO 3 evolves with temperature. Increasing the measurement temperature was found to slightly reduce the extent of domain reversal and the magnitude of the 111 lattice strain. Instead, these results indicate that temperature predominantly impacted the angular dependence of the 002/200 lattice strain. We attribute the observed differences in 002/200 lattice strain to the flattening of the free-energy near the tetragonal-orthorhombic phase boundary, where the flattening of the energy landscape promotes a polarization rotation response during the application of electric fields at room temperature.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2021

Driving magnetic domains at the nanoscale by interfacial strain-induced proximity

Here, we investigate the local nanoscale changes of the magnetic anisotropy of a Ni film subject to an inverse magnetostrictive effect by proximity to a V 2 O 3 layer. Using temperature-dependent photoemission electron microscopy (PEEM) combined with X-ray magnetic circular dichroism (XMCD), direct images of the Ni spin alignment across the first-order structural phase transition (SPT) of V 2 O 3 were obtained. We find an abrupt temperature-driven reorientation of the Ni magnetic domains across the SPT, which is associated with a large increase of the coercive field. Moreover, angular dependent ferromagnetic resonance (FMR) shows a remarkable change in the magnetic anisotropy of the Ni film across the SPT of V 2 O 3 . Micromagnetic simulations based on these results are in quantitative agreement with the PEEM data. Direct measurements of the lateral correlation length of the Ni domains from XMCD images show an increase of almost one order of magnitude at the SPT compared to room temperature, as well as a broad spatial distribution of the local transition temperatures, thus corroborating the phase coexistence of Ni anisotropies caused by the V 2 O 3 SPT. We show that the rearrangement of the Ni domains is due to strain induced by the oxide layers’ structural domains across the SPT. Our results illustrate the use of alternative hybrid systems to manipulate magnetic domains at the nanoscale, which allows for engineering of coercive fields for novel data storage architectures.

36 MATERIALS SCIENCE↗

DOE OSTI2020

Detection of uncompensated magnetization at the interface of an epitaxial antiferromagnetic insulator

We have probed directly the temperature and magnetic field dependence of pinned uncompensated magnetization at the interface of antiferromagnetic FeF 2 with Cu, using FeF 2 -Cu-Co spin valves. Electrons polarized by the Co layer are scattered by the pinned uncompensated moments at the FeF 2 -Cu interface giving rise to giant magnetoresistance. We determined the direction and magnitude of the pinned uncompensated magnetization at different magnetic fields and temperatures using the angular dependencies of resistance. The strong FeF 2 anisotropy pins the uncompensated magnetization along the easy axis independent of the cooling field orientation. Most interestingly, magnetic fields as high as 90 kOe cannot break the pinning at the FeF 2 -Cu interface. This proves that the pinned interfacial magnetization is strongly coupled to the antiferromagnetic order inside the bulk FeF 2 layer. Studies as a function of FeF2 crystalline orientation show that uncompensated spins are only detected in a spin valve with (110) crystal orientation, but not in valves containing FeF 2 (100) and FeF 2 (001). This observation is in agreement with symmetry-related considerations which predict the equilibrium boundary magnetization for the FeF 2 (110) layer.

36 MATERIALS SCIENCE↗