The structure of the catalytic domain of a plant cellulose synthase and its assembly into dimers
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catalysis (homogeneous), catalysis (heterogeneous)↗
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Local polar structure and multiferroic properties of (1−x)Bi{sub 0.9}Dy{sub 0.1}FeO{sub 3}−xPbTiO{sub 3} solid solution
The multiferroic (1–x)[0.9BiFeO{sub 3}–0.1DyFeO{sub 3}]–xPbTiO{sub 3} (BDF–xPT) solid solution with compositions around the morphotropic phase boundary (x = 0.25, 0.28, 0.31, 0.34, and 0.37) has been synthesized in the form of ceramics. The phase symmetry, microstructure, ferroelectricity, piezoresponse, and ferromagnetic properties have been characterized by various techniques. It is found that, with increasing content of lead titanate from x = 0.25 to x = 0.37, the grain size increases and the ferroelectric property is improved. The ferroelectric performance is further enhanced by the introduction of an excess amount (2%) of TiO{sub 2} or by sintering in oxygen atmosphere, which reduces the leakage. The local polar structure is imaged by piezoresponse force microscopy. Both the out-of-plane and in-plane images reveal distinct ferroelectric domain structures, with the amplitude and the average domain size decreasing with the increase of lead titanate amount. Compared with the (1–x)BiFeO{sub 3}–xPbTiO{sub 3} binary solid solution of about the same concentration of PT, the magnetic properties are enhanced in BDF–xPT due to the presence of dysprosium, as demonstrated by the ferromagnetic hysteresis loops displayed at room temperature and at 10 K, but the remnant magnetization decreases with increasing PT content. The simultaneous presence of ferroelectricity and ferromagnetism entitles the BDF–xPT solid solution a room-temperature multiferroic material.
36 MATERIALS SCIENCE↗
Correlation between spin structure oscillations and domain wall velocities
Magnetic sensing and logic devices based on the motion of magnetic domain walls rely on the precise and deterministic control of the position and the velocity of individual magnetic domain walls in curved nanowires. Varying domain wall velocities have been predicted to result from intrinsic effects such as oscillating domain wall spin structure transformations and extrinsic pinning due to imperfections. Here we use direct dynamic imaging of the nanoscale spin structure that allows us for the first time to directly check these predictions. We find a new regime of oscillating domain wall motion even below the Walker breakdown correlated with periodic spin structure changes. We show that the extrinsic pinning from imperfections in the nanowire only affects slow domain walls and we identify the magnetostatic energy, which scales with the domain wall velocity, as the energy reservoir for the domain wall to overcome the local pinning potential landscape.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Supramolecular structure formation of Langmuir-Blodgett films of comblike precursor and polyimide
The surface structure of Langmuir-Blodgett films of a comblike polyimide precursor-a rigid-chain polyamic acid alkylamine salt bearing multichains of tertiary amine-and films of the corresponding polyimide were studied by atomic force microscopy (AFM). An analysis of the images of the surface of three-layer films revealed a domain structure. It was found that the Langmuir-Blodgett film formation of the precursor occurs as a result of the layer-by-layer deposition of two-dimensional domains (composed of polyamic acid salt molecules on the water surface) onto a substrate. The formation of domains in a monolayer is associated with the chemical structure of the precursor, to be more precise, with the rigidity of the main chain and the presence of closely spaced aliphatic side chains in the polymer chain, whose total cross-section area is close to the surface area of the projection onto the plane of the repeating unit of the main chain. Polyimide films inherit the domain structure of the precursor films; the inhomogeneity of the film thickness substantially decreases, whereas the domain size and character of their distribution in the film remain unchanged.
36 MATERIALS SCIENCE↗
A Novel Glutathione S-Transferase Gtt2 Class (VpGSTT2) Is Found in the Genome of the AHPND/EMS Vibrio parahaemolyticus Shrimp Pathogen
Glutathione S-transferases are a family of detoxifying enzymes that catalyze the conjugation of reduced glutathione (GSH) with different xenobiotic compounds using either Ser, Tyr, or Cys as a primary catalytic residue. We identified a novel GST in the genome of the shrimp pathogen V. parahaemolyticus FIM- S1708+, a bacterial strain associated with Acute Hepatopancreatic Necrosis Disease (AHPND)/Early Mortality Syndrome (EMS) in cultured shrimp. This new GST class was named Gtt2. It has an atypical catalytic mechanism in which a water molecule instead of Ser, Tyr, or Cys activates the sulfhydryl group of GSH. The biochemical properties of Gtt2 from Vibrio parahaemolyticus (VpGSTT2) were characterized using kinetic and crystallographic methods. Recombinant VpGSTT2 was enzymatically active using GSH and CDNB as substrates, with a specific activity of 5.7 units/mg. Low affinity for substrates was demonstrated using both Michaelis–Menten kinetics and isothermal titration calorimetry. The crystal structure showed a canonical two-domain structure comprising a glutathione binding G-domain and a hydrophobic ligand H domain. A water molecule was hydrogen-bonded to residues Thr9 and Ser 11, as reported for the yeast Gtt2, suggesting a primary role in the reaction. Molecular docking showed that GSH could bind at the G-site in the vicinity of Ser11. G-site mutationsT9A and S11A were analyzed. S11A retained 30% activity, while T9A/S11A showed no detectable activity. VpGSTT2 was the first bacterial Gtt2 characterized, in which residues Ser11 and Thr9 coordinated a water molecule as part of a catalytic mechanism that was characteristic of yeast GTT2. The GTT2 family has been shown to provide protection against metal toxicity; in some cases, excess heavy metals appear in shrimp ponds presenting AHPND/EMS. Further studies may address whether GTT2 in V. parahaemolyticus pathogenic strains may provide a competitive advantage as a novel detoxification mechanism.
59 BASIC BIOLOGICAL SCIENCES↗
Ferroelectric Domain Studies of Patterned (001) BiFeO 3 by Angle-Resolved Piezoresponse Force Microscopy
We have studied the ferroelectric domains in (001) BiFeO 3 (BFO) films patterned into mesas with various aspect ratios, using angle-resolved piezoresponse force microscope (AR-PFM), which can image the in-plane polarization component with an angular resolution of 30 degrees. We observed not only stable polarization variants, but also meta-stable polarization variants, which can reduce the charge accumulated at domain boundaries. We considered the number of neighboring domains that are in contact, in order to analyze the complexity of the ferroelectric domain structure. Comparison of the ferroelectric domains from the patterned and unpatterned regions showed that the elastic relaxation induced by removal of the film surrounding the mesas led to a reduction of the average number of neighboring domains, indicative of a decrease in domain complexity. Finally, we also found that the rectangular BFO patterns with high aspect ratio had a simpler domain configuration and enhanced piezoelectric characteristics than square-shaped mesas. Manipulation of the ferroelectric domains by controlling the aspect ratio of the patterned BFO thin film mesas can be useful for nanoelectronic applications.
36 MATERIALS SCIENCE↗
Phase separation in LuFeO{sub 3} films
The structural transition at about 1000 °C, from the hexagonal to the orthorhombic phase of LuFeO{sub 3}, has been investigated in thin films of LuFeO{sub 3}. Separation of the two structural phases of LuFeO{sub 3} occurs on a length scale of micrometer, as visualized in real space using X-ray photoemission electron microscopy. The results are consistent with X-ray diffraction and atomic force microscopy obtained from LuFeO{sub 3} thin films undergoing the irreversible structural transition from the hexagonal to the orthorhombic phase of LuFeO{sub 3}, at elevated temperatures. The sharp phase boundaries between the structural phases are observed to align with the crystal planes of the hexagonal LuFeO{sub 3} phase. The coexistence of different structural domains indicates that the irreversible structural transition, from the hexagonal to the orthorhombic phase in LuFeO{sub 3}, is a first order transition, for epitaxial hexagonal LuFeO{sub 3} films grown on Al{sub 2}O{sub 3}.
36 MATERIALS SCIENCE↗
Magnetic Force Microscopy Images of Magnetic Garnet With Thin-Film Magnetic Tip
We present magnetic force microscopy images of YGdTmGa/YSmTmGa magnetic garnet, usinga thin Fe film deposited on Si_3N_5 tips. We have found correlations between the topography andthe magnetic domain structure. We have observed the domain wall contrast with a iron thin-film tip. We report on domain wall imaging of garnet with magnetic force microscopy.
Wadas, A.↗
Structure and properties of Pb(Lu{sub 1/2}Nb{sub 1/2})O{sub 3}–0.2PbTiO{sub 3} relaxor ferroelectric crystal
Graphical abstract: The relaxor state of the crystal was demonstrated by the dielectric behavior. - Highlights: • PLN–0.2PT ferroelectric crystal was obtained by the TSSG technique. • The super-lattice reflections were identified by XRD and TEM results. • The PLN–0.2PT crystal is a typical relaxor ferroelectric. - Abstract: Ferroelectric crystal Pb(Lu{sub 1/2}Nb{sub 1/2})O{sub 3}–0.2PbTiO{sub 3} (PLN–0.2PT) was successfully obtained by a top-seed solution growth technique. At room temperature the symmetry was orthorhomic according to X-ray diffraction (XRD). The super-lattice reflections were identified by XRD and transmission electron microscope (TEM). The micro-domain structure was detected by TEM. The temperature dependence of the dielectric constant (ϵ′) shows a typical relaxor behavior. The temperature dependence of coercive electric field and remnant polarizations were investigated, which also shows the relaxor feature.
36 MATERIALS SCIENCE↗
Study on a novel orientation domain of Mg17Ce2 in aged Mg–Y–Ce alloy by HAADF–STEM
Highlights: • A novel 90 degree orientation domain is verified in Mg{sub 17}Ce{sub 2} granules. • Orientations of domain–Ι and Π are parallel and perpendicular to α-Mg matrix. • A 〈 1-bar 010〉 direction is unchanged among domain–Ι, domain–Π and α-Mg matrix. • Domain–Ι matches the α-Mg matrix better than the domain–Π. - Abstract: After solid solution and aging treatment, Mg–3.0 wt%Y–1.0 wt%Ce ternary alloys were characterized using high angle annular dark field scanning transmission electron microscopy. The main precipitates are dominated by β{sup ′} phase and Mg{sub 17}Ce{sub 2}, a Ni{sub 17}Th{sub 2}–type intermetallic compound. An orientation domain can be discerned generally in Mg{sub 17}Ce{sub 2} granules. This domain structure of Mg{sub 17}Ce{sub 2} always consists of two types of domains (defined as domain–Ι and domain–Π) with a 90 degree orientation difference. In terms of crystallographic orientation relationships among α-Mg matrix and both domains, the domain–Ι is parallel to α-Mg matrix, whereas, the domain–Π is perpendicular to α-Mg matrix. It can be certain that a 〈 1-bar 010〉 direction is an unchanged orientation. Due to nearly equal values of lattice parameters (a and c) of Mg{sub 17}Ce{sub 2}, both domain–Ι and domain–Π can matches well with α-Mg matrix. Comparatively, the interfacial matching between domain–Ι and α-Mg matrix is better, suggesting that the domain–Ι is dominant.
36 MATERIALS SCIENCE↗
Barkhausen discontinuities and hysteresis of ferromagnetics: New stochastic approach
The magnetization of ferromagnetic material is considered as periodically inhomogeneous Markov process. The theory assumes both statistically independent and correlated Barkhausen discontinuities. The model, based on the chain evolution-type process theory, assumes that the domain structure of a ferromagnet passes successively the steps of: linear growing, exponential acceleration and domains annihilation to zero density at magnetic saturation. The solution of stochastic differential Kolmogorov equation enables the hysteresis loop calculus.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Vortex Domain Walls in Ferroelectrics
Controlling the domain formation in ferroelectric materials at the nanoscale is a fertile ground to explore emergent phenomena and their technological prospects. For example, charged ferroelectric domain walls in BiFeO 3 and ErMnO 3 exhibit significantly enhanced conductivity which could serve as the foundation for next-generation circuits. In this work, we describe a concept in which polar vortices perform the same role as a ferroelectric domain wall in classical domain structures with the key difference being that the polar vortices can accommodate charged (i.e., head-to-head and tail-to-tail) domains, for example, in ferroelectric PbTiO 3 /dielectric SrTiO 3 superlattices. Such a vortex domain wall structure can be manipulated in a reversible fashion under an external applied field.
36 MATERIALS SCIENCE↗
Switchable polar spirals in tricolor oxide superlattices
There are increasing evidences that ferroelectric states at the nanoscale can exhibit fascinating topological structures including polar vortices and skyrmions, akin to those observed in the ferromagnetic systems. Here we report the discovery of a new type of polar topological structure, an ordered array of nanoscale spirals, in the PbTiO 3 /BiFeO 3 /SrTiO 3 tricolor ferroelectric superlattice system obtained via phase-field simulations. This polar spiral structure is composed of fine ordered semi-vortex arrays with vortex cores forming a wavy distribution. It is demonstrated that the tricolor system has an ultrahigh Curie temperature of ~1000 K and a temperature of ~800 K for the phase transformation from spiral structure to in-plane orthorhombic domain structure, demonstrating a great thermal stability. The periodicity phase-diagram is constructed, showing multiple phases from inplane domain, polar spiral, and polar vortex to flux-closure with increasing ferroelectric layer thickness. Moreover, the spiral structure has a net in-plane polarization that could be switched by an experimentally-feasible irrotational in-plane field. The switching process involves a metastable vortex state and is fully reversible. This discovery could open up a new routine to design novel multiferroic topological structures with enhanced stability and tunability towards potential future applications in next-generation electronics.
36 MATERIALS SCIENCE↗
The Atypical Response Regulator Protein ChxR Has Structural Characteristics and Dimer Interface Interactions That Are Unique within the OmpR/PhoB Subfamily
Typically as a result of phosphorylation, OmpR/PhoB response regulators form homodimers through a receiver domain as an integral step in transcriptional activation. Phosphorylation stabilizes the ionic and hydrophobic interactions between monomers. Recent studies have shown that some response regulators retain functional activity in the absence of phosphorylation and are termed atypical response regulators. The two currently available receiver domain structures of atypical response regulators are very similar to their phospho-accepting homologs, and their propensity to form homodimers is generally retained. An atypical response regulator, ChxR, from Chlamydia trachomatis, was previously reported to form homodimers; however, the residues critical to this interaction have not been elucidated. We hypothesize that the intra- and intermolecular interactions involved in forming a transcriptionally competent ChxR are distinct from the canonical phosphorylation (activation) paradigm in the OmpR/PhoB response regulator subfamily. To test this hypothesis, structural and functional studies were performed on the receiver domain of ChxR. Two crystal structures of the receiver domain were solved with the recently developed method using triiodo compound I3C. These structures revealed many characteristics unique to OmpR/PhoB subfamily members: typical or atypical. Included was the absence of two {alpha}-helices present in all other OmpR/PhoB response regulators. Functional studies on various dimer interface residues demonstrated that ChxR forms relatively stable homodimers through hydrophobic interactions, and disruption of these can be accomplished with the introduction of a charged residue within the dimer interface. A gel shift study with monomeric ChxR supports that dimerization through the receiver domain is critical for interaction with DNA.
59 BASIC BIOLOGICAL SCIENCES↗
Fabrication of single crystalline, uniaxial single domain Co nanowire arrays with high coercivity
Whilst Co nanorods with high coercivity were synthesized during recent years, they did not achieve the same results as for Co nanowires embedded in solid templates. In the present work, Co nanowire arrays (NWAs) with high coercivity were successfully fabricated in porous aluminum oxide template under optimum conditions by using pulsed ac electrodeposition technique. Magnetic properties and crystalline characteristics of the nanowires were investigated by hysteresis loop measurements, first-order reversal curve (FORC) analysis, X-ray diffraction (XRD), and selected area electron diffraction (SAED) patterns. Hysteresis loop measurements showed high coercivity of about 4.8 kOe at room temperature together with optimum squareness of 1, resulting in an increase of the previous maximum coercivity for Co NWAs up to 45%. XRD and SAED patterns revealed a single crystalline texture along the [0002] direction, indicating the large magnetocrystalline anisotropy. On the other hand, FORC analysis confirmed a single domain structure for the Co NWAs. In addition, the reversal mechanism of the single crystalline, single domain Co NWAs was studied which resulted in the fixed easy axis with a coherent rotation. Accordingly, these nanowires might offer promising applications in high density bit patterned media and low power logic devices.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Nanoscale Origins of Ferroelastic Domain Wall Mobility in Ferroelectric Multilayers
Here we investigate the nanoscale origins of ferroelastic domain wall motion in ferroelectric multilayer thin films that lead to giant electromechanical responses. We present direct evidence for complex underpinning factors that result in ferroelastic domain wall mobility using a combination of atomic-level aberration corrected scanning transmission electron microscopy and phase-field simulations in model epitaxial (001) tetragonal (T) PbZr x Ti 1-x O 3 (PZT)/rhombohedral (R) PbZr x Ti 1-x O 3 (PZT) bilayer heterostructures. The local electric dipole distribution is imaged on an atomic scale for a ferroelastic domain wall that nucleates in the R-layer and cuts through the composition breaking the T/R interface. Our studies reveal a highly complex polarization rotation domain structure that is nearly on the knife-edge at the vicinity of this wall. Induced phases, namely tetragonal-like and rhombohedral-like monoclinic were observed close to the interface, and exotic domain arrangements, such as a half-four-fold closure structure, are observed. Phase field simulations show this is due to the minimization of the excessive elastic and electrostatic energies driven by the enormous strain gradient present at the location of the ferroelastic domain walls. Thus, in response to an applied stimulus, such as an electric field, any polarization reorientation must minimize the elastic and electrostatic discontinuities due to this strain gradient, which would induce a dramatic rearrangement of the domain structure. This insight into the origins of ferroelastic domain wall motion will allow researchers to better “craft” such multilayered ferroelectric systems with precisely tailored domain wall functionality and enhanced sensitivity, which can be exploited for the next generation of integrated piezoelectric technologies.
36 MATERIALS SCIENCE↗
Gauge-potential-induced vortices in spin-1 Bose–Einstein condensates with spin–orbit coupling
Highlights: •Effectively rotate the so-coupled condensate by an external magnetic field. •New effects of the Aharonov–Bohm geometric phase in ultracold atomic gases. •Many novel vortex structures have been studied. •A new stabilization mechanism for multiquantum vortices in spinor BECs. -- Abstract: We investigate the vortex states generated by the gauge-potential-induced rotation in spin-1 Bose–Einstein condensates with spin–orbit coupling. An external magnetic field coupling with spin equivalently imprints a non-zero gauge angular momentum, which induces an equivalent canonical angular momentum in the opposite direction, accompanied by the generation of quantized vortices. The competition between interatomic interactions, spin–orbit coupling and magnetic field leads to a variety of vortex structures. In the weakly interatomic interacting regime, as the increase of SO coupling strength, the condensate with a weak magnetic field gradient experiences the transition from polar-core vortex to Mermin–Ho vortex then to vortex cluster , and the three-vortex structures are found in the vortex cluster. As the SO coupling increases further, the condensate presents symmetrical density domains separated by radial vortex arrays. With the increase of magnetic field gradient, the number of density domains increases, and the condensate eventually turns into a giant vortex. In the relatively strong interatomic interacting regime, vortex sheets are formed when the magnetic field gradient is weak, and the increasing of magnetic field gradient makes the vortex arrangement orderly. Compared with the cases of weak interatomic interacting regime, density domain structures are broken because of the strong interatomic interactions, and the vortices are arranged in coaxial annular arrays.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Nonlinear diffraction of light on near-surface microdomain structures
The nonlinear diffraction on periodic microdomain structures with different orientations of the spontaneous polarisation axis relative to the surface is theoretically considered. The possibility of reliable non-destructive diagnostics of the period, duty cycle and depth of domain structures, as well as of the shape of the domain walls under the crystalline surface is shown. (nonlinear optical phenomena)
36 MATERIALS SCIENCE↗