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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 271 records · Page 15
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

TEAMER: Drifting Hydrophone System - Block Diagram and Pre-Amplifier Calibrations

This data release is part of TEAMER RFTS 2, where the Cooperative Institute for Marine Resources Studies (CIMRS) at Oregon State University is performing hardware and software development and integration of four newly designed drifting hydrophone systems for underwater noise measurements at marine renewable energy projects. These new acoustic systems will provide advanced technology support available for use at both tidal and wave energy deployments adding additional resources to the limited amount of drifting hydrophone technologies that are available to the marine energy community The submission data contains 2 files plus a Post-Access Report: One file containing the calibration parameters for four (4) pre-amplifier boards used on the drifting hydrophones. Pre-amplifier boards are model "WB PREAMP REV6," with serial numbers; 28, 29, 30, and 31. One image file illustrating the system functional block diagram of the drifting hydrophone system configuration.

16 TIDAL AND WAVE POWER↗
DOE OSTI2021

A Preprocessing Tool for Enhanced Ion Mobility–Mass Spectrometry-Based Omics Workflows

The ability to improve the data quality of ion mobility–mass spectrometry (IM-MS) measurements is of great importance for enabling modular and efficient computational workflows and gaining better qualitative and quantitative insights from complex biological and environmental samples. We developed the PNNL PreProcessor, a standalone and user-friendly software housing various algorithmic implementations to generate new MS-files with enhanced signal quality and in the same instrument format. Different experimental approaches are supported for IM-MS based on Drift-Tube (DT) and Structures for Lossless Ion Manipulations (SLIM), including liquid chromatography (LC) and infusion analyses. The algorithms extend the dynamic range of the detection system, while reducing file sizes for faster and memory-efficient downstream processing. Specifically, multidimensional smoothing improves peak shapes of poorly defined low-abundance signals, and saturation repair reconstructs the intensity profile of high-abundance peaks from various analyte types. Further, other functionalities are data compression and interpolation, IM demultiplexing, noise filtering by low intensity threshold and spike removal, and exporting of acquisition metadata. Several advantages of the tool are illustrated, including an increase of 19.4% in lipid annotations and a two-times faster processing of LC-DT IM-MS data-independent acquisition spectra from a complex lipid extract of a standard human plasma sample. The software is freely available at https://omics.pnl.gov/software/pnnl-preprocessor.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Recent evolutions in the LTDP CDF project

In the latest years, CNAF (the national center of the Italian Institute for Nuclear Physics INFN dedicated to Research and Development on Information and Communication Technologies) has been working on the Long Term Data Preservation (LTDP) project for the CDF experiment, active at Fermilab from 1990 to 2011. The main aims of the project are to protect the most relevant part of the CDF RUN-2 data collected between 2001 and 2011 and already stored on tape at CNAF (4 PB), as well as to ensure the availability and the access to the analysis facility to those data over time. Lately, the CDF database, hosting information about CDF datasets such as their structure, file locations and metadata, has been imported from Fermilab to CNAF. Also, the Sequential Access via Metadata (SAM) station data handling tool for CDF data management, that allows to manage data transfers and to retrieve information from the CDF database, has been properly installed and configured at CNAF. This was a fundamental step in the perspective of a complete decommissioning of CDF services on Fermilab side. An access system has been designed and tested to submit CDF analysis jobs, using CDF software distributed via CERN Virtual Machine File System (CVMFS) and requesting delivery of CDF files stored on CNAF tapes, as well as data present only on Fermilab storage archive. Moreover, the availability and the correctness of all CDF data stored on CNAF tapes has been verified. This paper describes all these recent evolutions in detail, presenting the future plans for the LTDP project at CNAF.

Fornari, Federico↗
DOE OSTI2016

NREL MOIS Data for NWEI Azura July 2016

NREL Modular Ocean Instrumentation System (MOIS) data files for the Azura grid-connected deployment at the 30-meter berth of the US Navys Wave Energy Test Site (WETS 30m Site) at the Kaneohe Marine Corps Base Hawaii (MCBH) on the windward (northeast) coast of the island of Oahu, HI. See general documentation describing specifics of the data files and formats in a separate NREL submission (linked below).

16 TIDAL AND WAVE POWER↗
DOE OSTI2016

NREL MOIS Data for NWEI Azura August 2016

NREL Modular Ocean Instrumentation System (MOIS) data files for the Azura grid-connected deployment at the 30-meter berth of the US Navys Wave Energy Test Site (WETS 30m Site) at the Kaneohe Marine Corps Base Hawaii (MCBH) on the windward (northeast) coast of the island of Oahu, HI. See general documentation describing specifics of the data files and formats in a separate NREL submission (linked below).

16 TIDAL AND WAVE POWER↗
DOE OSTI2016

NREL MOIS Data for NWEI Azura September 2016

NREL Modular Ocean Instrumentation System (MOIS) data files for the Azura grid-connected deployment at the 30-meter berth of the US Navys Wave Energy Test Site (WETS 30m Site) at the Kaneohe Marine Corps Base Hawaii (MCBH) on the windward (northeast) coast of the island of Oahu, HI. See general documentation describing specifics of the data files and formats in a separate NREL submission (linked below).

16 TIDAL AND WAVE POWER↗
DOE OSTI2017

StoreRush: An Application-Level Approach to Harvesting Idle Storage in a Best Effort Environment

For a production HPC system where storage devices are shared between multiple applications and managed in a best effort manner, contention is often a major problem leading to some storage devices being more loaded than others and causing a significant reduction in I/O throughput. In this paper, we describe our latest efforts StoreRush to resolve this practical issue at the application level without requiring modification to the file and storage system. The proposed scheme uses a two-level messaging system to harvest idle storage via re-routing I/O requests to a less congested storage location so that write performance is improved while limiting the impact on read by throttling re-routing if deemed too much. An analytical model is derived to guide the setup of optimal throttling factor. The proposed scheme is verified against production applications Pixie3D, XGC1 and QMCPack during production windows, which very well demonstrated the effectiveness (e.g., up to 1.8x improvement in write) and scalability of our approach (up to 131,072 cores).

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2017

Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank

Motivation: Glycans play a central role in many essential biological processes. Glycan Reader was originally developed to simplify the reading of Protein Data Bank (PDB) files containing glycans through the automatic detection and annotation of sugars and glycosidic linkages between sugar units and to proteins, all based on atomic coordinates and connectivity information. Carbohydrates can have various chemical modifications at different positions, making their chemical space much diverse. Unfortunately, current PDB files do not provide exact annotations for most carbohydrate derivatives and more than 50% of PDB glycan chains have at least one carbohydrate derivative that could not be correctly recognized by the original Glycan Reader. Results: Glycan Reader has been improved and now identifies most sugar types and chemical modifications (including various glycolipids) in the PDB, and both PDB and PDBx/mmCIF formats are supported. CHARMM-GUI Glycan Reader is updated to generate the simulation system and input of various glycoconjugates with most sugar types and chemical modifications. It also offers a new functionality to edit the glycan structures through addition/deletion/modification of glycosylation types, sugar types, chemical modifications, glycosidic linkages, and anomeric states. The simulation system and input files can be used for CHARMM, NAMD, GROMACS, AMBER, GENESIS, LAMMPS, Desmond, OpenMM, and CHARMM/OpenMM. Glycan Fragment Database in GlycanStructure. Org is also updated to provide an intuitive glycan sequence search tool for complex glycan structures with various chemical modifications in the PDB.

Park, Sang-Jun↗
DOE OSTI2024

ATLAS-MAP: An Automated Test Station for Gated Electronic Transport Measurements

The diversification of electronic materials in devices provides a strong incentive for methods to rapidly correlate device performance with fabrication decisions. In this work, we present a low-cost automated test station for gated electronic transport measurements of field-effect transistors. Utilizing open-source PyMeasure libraries for transparent instrument control, the “ATLAS-MAP” system serves as a customizable interface between sourcemeters and samples under test and is programmed to conduct transfer curve and van der Pauw methods with static and sweeping gate voltages. Zinc oxide transistors of variable thickness (5, 10, and 20 nm) and channel size (50 μm to 3 mm, of equal length and width) were fabricated to validate the design. Standardization of testing procedures and raw data formatting enabled automated data analysis. A detailed list of parts and code files for the system are provided.

36 MATERIALS SCIENCE↗
DOE OSTI2017

Numerical Study of Quantum Hall Bilayers at Total Filling ν T = 1 : A New Phase at Intermediate Layer Distances

We view the phase diagram of quantum Hall bilayer systems with total filing ν T = 1/2 + 1/2 of the lowest Landau level as a function of layer distances d . Based on numerical exact diagonalization calculations, we obtain three distinct phases, including an exciton superfluid phase with spontaneous interlayer coherence at small d , a composite Fermi liquid at large d , and an intermediate phase for 1.1 < d/l B < 1.8 (l B is the magnetic length). The transition from the exciton superfluid to the intermediate phase is identified by (i) a dramatic change in the Berry curvature of the ground state under twisted boundary conditions on the two layers and (ii) an energy level crossing of the first excited state. The transition from the intermediate phase to the composite Fermi liquid is identified by the vanishing of the exciton superfluid stiffness. Moreover, from our finite-size study, the energy cost of transferring one electron between the layers shows an even-odd effect and possibly extrapolates to a finite value in the thermodynamic limit, indicating the enhanced intralayer correlation. Our identification of an intermediate phase and its distinctive features shed new light on the theoretical understanding of the quantum Hall bilayer system at total filling ν T = 1 .

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2020

Evolution of the ROOT Tree I/O

The ROOT TTree data format encodes hundreds of petabytes of High Energy and Nuclear Physics events. Its columnar layout drives rapid analyses, as only those parts (“branches”) that are really used in a given analysis need to be read from storage. Its unique feature is the seamless C++ integration, which allows users to directly store their event classes without explicitly defining data schemas. In this contribution, we present the status and plans of the future ROOT 7 event I/O. Along with the ROOT 7 interface modernization, we aim for robust, where possible compile-time safe C++ interfaces to read and write event data. On the performance side, we show first benchmarks using ROOT’s new experimental I/O subsystem that combines the best of TTrees with recent advances in columnar data formats. A core ingredient is a strong separation of the high-level logical data layout (C++ classes) from the low-level physical data layout (storage backed nested vectors of simple types). We show how the new, optimized physical data layout speeds up serialization and deserialization and facilitates parallel, vectorized and bulk operations. This lets ROOT I/O run optimally on the upcoming ultra-fast NVRAM storage devices, as well as file-less storage systems such as object stores.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2017

Data Resilience in the dCache Storage System

In this study we discuss design, implementation considerations, and performance of a new Resilience Service in the dCache storage system responsible for file availability and durability functionality.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2019

CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates

Characterizing glycans and glycoconjugates in the context of three-dimensional structures is important in understanding their biological roles and developing efficient therapeutic agents. Computational modeling and molecular simulation have become an essential tool complementary to experimental methods. In this work, we present a computational tool, Glycan Modeler for in silico N–/O –glycosylation of the target protein and generation of carbohydrate-only systems. In our previous study, we developed Glycan Reader , a web-based tool for detecting carbohydrate molecules from a PDB structure and generation of simulation system and input files. As integrated into Glycan Reader in CHARMM-GUI, Glycan Modeler (Glycan Reader & Modeler) enables to generate the structures of glycans and glycoconjugates for given glycan sequences and glycosylation sites using PDB glycan template structures from Glycan Fragment Database (http://glycanstructure.org/fragment-db). Our benchmark tests demonstrate the universal applicability of Glycan Reader & Modeler to various glycan sequences and target proteins. We also investigated the structural properties of modeled glycan structures by running 2-μs molecular dynamics simulations of HIV envelope protein. The simulations show that the modeled glycan structures built by Glycan Reader & Modeler have the similar structural features compared to the ones solved by X-ray crystallography. We also describe the representative examples of glycoconjugate modeling with video demos to illustrate the practical applications of Glycan Reader & Modeler . Glycan Reader & Modeler is freely available at http://charmm-gui.org/input/glycan.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Utah FORGE Project 3-2417: Simulations for Distributed Acoustic Sensing Strain Signatures as an Indicator of Fracture Connectivity

This dataset encompasses simulations of strain signatures from both hydraulically connected and "near-miss" fractures in enhanced geothermal systems (EGS). The files and results are presented from the perspective of digital acoustic sensing's (DAS) potential to differentiate the two fracture types. This dataset was acquired by the FOGMORE R&D project (Fiber Optic Geophysical MOnitoring of Reservoir Evolution), under Utah FORGE R&D Project 3-2417. Included are simulation and results via MatLab and COMSOL files, as well as a thesis and paper summarizing the results. Some stimulated fractures may be incomplete, approaching but not intersecting the production well. These "near-miss" fractures can be addressed in future stimulation stages or re-stimulated to complete the connection. We propose the use of fiber optic distributed acoustic sensing (DAS) as a method by which near-miss stimulated fractures may be identified and distinguished from hydraulically connected fractures. The low-frequency sub-nanostrain signatures of both complete and near-miss fractures in DAS data are simulated in this study using a hydrogeomechanical discrete fracture network model. The spatial distribution of strain was found to be an accurate indicator. However, this indicator must be evaluated in the context of DAS gauge length and spatial sampling. These simulations are a precursor to tests conducted at FORGE in 2023.

15 GEOTHERMAL ENERGY↗
DOE OSTI2023

AWAKEN Site A1 - LLNL Profiling Lidar (ZX300 #1381) / Raw Data

This dataset contains vertical profiling lidar data from AWAKEN site A1. This is the ZX300 unit #1381 lidar system. The .csv files are monthly data files with 10-min average data. The .zip files are daily high frequency data and zipped by month.

17 WIND ENERGY↗
DOE OSTI2025

A1 LLNL Profiling Lidar #773

This dataset contains vertical profiling lidar data from AWAKEN site A1. This is the ZephIR300 #773 lidar system. The .csv files are monthly data files with 10-min average data. The .zip files are daily high frequency data and zipped by month.

17 WIND ENERGY↗