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At least 271 records · Page 15

Phosphorylation cascade regulates the formation and maturation of rotaviral replication factories

The rotavirus (RV) genome is replicated and packaged into virus progeny in cytoplasmic inclusions called viroplasms, which require interactions between RV nonstructural proteins NSP2 and NSP5. How viroplasms form remains unknown. We previously found two forms of NSP2 in RV-infected cells: a cytoplasmically dispersed dNSP2, which interacts with hypophosphorylated NSP5; and a viroplasm-specific vNSP2, which interacts with hyperphosphorylated NSP5. Other studies report that CK1α, a ubiquitous cellular kinase, hyperphosphorylates NSP5, but requires NSP2 for reasons that are unclear. Here we show that silencing CK1α in cells before RV infection resulted in ( i ) >90% decrease in RV replication, ( ii ) disrupted vNSP2 and NSP5 interaction, ( iii ) dispersion of vNSP2 throughout the cytoplasm, and ( iv ) reduced vNSP2 protein levels. Together, these data indicate that CK1α directly affects NSP2. Accordingly, an in vitro kinase assay showed that CK1α phosphorylates serine 313 of NSP2 and triggers NSP2 octamers to form a lattice structure as demonstrated by crystallographic analysis. Additionally, a dual-specificity autokinase activity for NSP2 was identified and confirmed by mass spectrometry. Together, our studies show that phosphorylation of NSP2 involving CK1α controls viroplasm assembly. Considering that CK1α plays a role in the replication of other RNA viruses, similar phosphorylation-dependent mechanisms may exist for other virus pathogens that require cytoplasmic virus factories for replication.

59 BASIC BIOLOGICAL SCIENCES↗

Interfacial engineering of phthalocyanine molecules on graphitic and metal substrates

Metal porphyrin and phthalocyanine have found variety of applications in catalysis, electronic and spintronic devices and photovoltaic cells, many of which rely on accurate position of the molecules and alignment of their electronic levels with respect to the substrate. The substrate and local environment affect significantly the electronic properties of these macrocyclic molecules. Computational simulations provide valuable insights for engineering the molecule–metal, molecule–molecule and molecule–ligand interfaces. In this review, we focus on adsorption of metal phthalocyanine, particularly iron phthalocyanine, on graphite, epitaxial graphene, and metal substrates. Furthermore, these systems show varied interfacial binding strength and chameleon-like molecular electronic structures. Spin of the molecules can be controlled by small ligands, and the ground state can be tuned between S = 1, S = 1/2 and S = 0. Inclusion of van der Waals interaction in the first-principles calculations is shown to be essential for accurate description of the interfaces.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Experimental study of linear magnetic dichroism in photoionization satellite transitions of atomic rubidium

Laser orientation in the initial state has been used to study the properties of satellite transitions in inner-shell photoionization of rubidium atoms. The linear magnetic dichroism in the angular distribution (LMDAD) has been utilized to probe the continuum waves of orbital angular momentum conserving monopole, and angular momentum changing conjugate satellites, accompanying the 4p ionization of atomic Rb. We show experimentally that LMDAD of both types of satellite transitions is nonzero and that LMDAD of monopole satellites, measured as a function of photon energy, mimics the LMDAD of direct photoionization, whereas the LMDAD of conjugate transitions deviates drastically from that trend. The results indicate that conjugate transitions cannot be described theoretically without explicit inclusion of electron-electron interaction. The present data can thus be used as a very precise test of current models for photoionization.

74 ATOMIC AND MOLECULAR PHYSICS↗

Measurement of the D - s Decay Constant f Ds and Observation of New Charm Resonances Decaying to D*π

The absolute branching fractions for the decays D - s → ℓ-$\bar{v}$ - (ℓ = e, μ, or τ) are measured using a data sample corresponding to an integrated luminosity of 521 fb -1 collected at center of mass energies near 10.58 GeV with the BABAR detector at the PEPII e + e - collider at SLAC. The number of D s - mesons is determined by reconstructing the recoiling system DKXγ in events of the type e + e - → DKXD* s - , where D* s - → D s - γ and X represents additional pions from fragmentation. The D s - → ℓ - v ℓ events are detected by full or partial reconstruction of the recoiling system DKX{gamma}ℓ. The following results are obtained: β(D s - → μ - v) = (6.02 ± 0.38 ± 0.34) x 10 -3 , {Beta}(D s - → τ - v) = (5.00 ± 0.35 ± 0.49) x 10 -2 , and B(D s - → e - ν) < 2.8 x 10 -4 at 90% C.L., where the first uncertainty is statistical and the second is systematic. The branching fraction measurements are combined to determine the D s - decay constant f Ds = (258.6 ± 6.4 ± 7.5) MeV. In addition, a study has been performed of the D + π} - , D 0 π} + , and D* + π - systems in inclusive e + e - → c c interactions in a search for excited D meson states. The dataset used consists of {approx}454 fb -1 . The mass spectra for these systems show, for the first time, candidates for the radial excitations of the D 0 , D* 0 , and D* + , as well as the L = 2 excited states of the D 0 and D - , where L is the orbital angular momentum of the quarks. Finally, a prototype of a next generation Detector of Internally Reflected Cherenkov radiation (Focusing DIRC) has been tested using a 10 GeV electron beam at SLAC. The Focusing DIRC is based on the DIRC which was used in the BABAR detector, but has new pixel photon detectors which improve the resolution on the single photon time of propagation by about an order of magnitude allowing, for the first time, to correct the chromatic smearing in the Cherenkov angle. The Focusing DIRC may be used in a future Super-B factory.

43 PARTICLE ACCELERATORS↗

Hydrogen Sustainable Infrastructure Guidelines (H2SIG)

Infrastructure interacts with major global challenges inclusive of climate change, resilience, equity and social justice, environmental protection and biodiversity, public health, and economic recovery. This effort directly addresses how to apply sustainability assessments to the unique aspects of hydrogen (H2) infrastructure projects using the Envision® sustainability framework developed by the Institute for Sustainable Infrastructure (ISI). Envision is a flexible system of criteria and performance objectives to aid decision makers and help project teams identify sustainable approaches during planning, design and construction of infrastructure projects that will continue throughout the project’s operations, maintenance, and end-of-life phases. The goal of this work is to support those interested in conducting sustainability assessments for hydrogen infrastructure projects. Through this work the team has developed hydrogen-specific guidelines and best practices to assist project developers, investors and regulators in straightforward application of the Envision framework to systematically enhance clarity and increase objectivity across hydrogen projects. Subject matter experts from 20 different organizations (industry, non-profits, municipalities, emissions regulators, national labs) were engaged through 7 focus groups to discuss the H2-prioritized Envision requirements and elements to be included in the guidelines. In addition to these guidelines, the team conducted case studies as a way of demonstrating and informing the guidelines and providing examples or ideas for implementing sustainability in future projects. Through this study, the authors found that hydrogen infrastructure projects can incorporate many sustainable practices including reducing GHG emissions affecting climate change, reducing air pollutant emissions affecting the health of communities, synergistically handling waste byproducts, integrating into existing infrastructure, incorporating renewable energy, and addressing equity and environmental justice. Additionally, hydrogen infrastructure projects could benefit from 2-way communication engagement and collaborative planning with stakeholders, educational awareness of hydrogen technology, tracking and reporting on water use and water quality, and including monetized environmental and social benefits in life-cycle cost estimates. This document is the final technical report for the Hydrogen Sustainability Assessment Methods for Project Development project. While the main focus of the report is to provide guidelines for applying sustainability to hydrogen infrastructure, there are sections within the appendix providing completed project tasks and methodology.

08 HYDROGEN↗

Discerning Deception: An Empirically-Driven Agent-Based Model of Expert Evaluation of Scientific Content

Both human subject experiments and computational, modeling and simulations have been used to study detection of deception. This work aims to combine these two methods by integrating empirically-derived information (from human subject experiments) into agent-based models to generate novel insights into the complex problems of detection of disinformation content. Computational experiments are used to simulate across multiple scenarios for evaluation and decision-making regarding the validity of potentially deceptive scientific documents. Factors influencing the human agent behaviors in the model were identified through a human subject experiment that was conducted to evaluate and characterize decision making related to disinformation discernment. Correlation and regression analyses were used to translate insights from the human subjects experiment to inform the parameterization of agent features and scenario development. Three scenarios were evaluated with the agent-based models to help evaluate the replicability of the simulations (validation analysis) and assess the influence of human agent and document features (sensitivity analyses). A replication of the human participant experiment demonstrated that the agent-based simulations compare favorably to empirical findings. The agent-based modeling was then used to conduct sensitivity analysis on the accuracy of deception detection as a function of document proportions and human agent features. Results indicate that precision values are adversely impacted when the proportion of deceptive documents is lower in the overall sample, whereas recall values are more sensitive to changes in human agent features. These findings indicate important nuances in accuracy evaluations that should be further considered (including consideration of potential alternate metrics) in future agent-based models of disinformation. Additional areas for future exploration include extension of simulations to consider other ways to align the agent-based model design with psychological theory and inclusion of agent-agent interactions, especially as it pertains to sharing of scientific information within an organizational context.

99 GENERAL AND MISCELLANEOUS↗

Knowledge-based commodity distribution planning

This paper presents an overview of a Decision Support System (DSS) that incorporates Knowledge-Based (KB) and commercial off the shelf (COTS) technology components. The Knowledge-Based Logistics Planning Shell (KBLPS) is a state-of-the-art DSS with an interactive map-oriented graphics user interface and powerful underlying planning algorithms. KBLPS was designed and implemented to support skilled Army logisticians to prepare and evaluate logistics plans rapidly, in order to support corps-level battle scenarios. KBLPS represents a substantial advance in graphical interactive planning tools, with the inclusion of intelligent planning algorithms that provide a powerful adjunct to the planning skills of commodity distribution planners.

Saks, Victor↗

Expendable launch vehicle studies

Analytical support studies of expendable launch vehicles concentrate on the stability of the dynamics during launch especially during or near the region of maximum dynamic pressure. The in-plane dynamic equations of a generic launch vehicle with multiple flexible bending and fuel sloshing modes are developed and linearized. The information from LeRC about the grids, masses, and modes is incorporated into the model. The eigenvalues of the plant are analyzed for several modeling factors: utilizing diagonal mass matrix, uniform beam assumption, inclusion of aerodynamics, and the interaction between the aerodynamics and the flexible bending motion. Preliminary PID, LQR, and LQG control designs with sensor and actuator dynamics for this system and simulations are also conducted. The initial analysis for comparison of PD (proportional-derivative) and full state feedback LQR Linear quadratic regulator) shows that the split weighted LQR controller has better performance than that of the PD. In order to meet both the performance and robustness requirements, the H(sub infinity) robust controller for the expendable launch vehicle is developed. The simulation indicates that both the performance and robustness of the H(sub infinity) controller are better than that for the PID and LQG controllers. The modelling and analysis support studies team has continued development of methodology, using eigensensitivity analysis, to solve three classes of discrete eigenvalue equations. In the first class, the matrix elements are non-linear functions of the eigenvector. All non-linear periodic motion can be cast in this form. Here the eigenvector is comprised of the coefficients of complete basis functions spanning the response space and the eigenvalue is the frequency. The second class of eigenvalue problems studied is the quadratic eigenvalue problem. Solutions for linear viscously damped structures or viscoelastic structures can be reduced to this form. Particular attention is paid to Maxwell and Kelvin models. The third class of problems consists of linear eigenvalue problems in which the elements of the mass and stiffness matrices are stochastic. dynamic structural response for which the parameters are given by probabilistic distribution functions, rather than deterministic values, can be cast in this form. Solutions for several problems in each class will be presented.

Bainum, Peter M.↗

Organization of P, S, and Fe Inclusions in a Freshwater Magnetococcus

Magnetotactic bacteria are a heterogeneous group of motile, mainly aquatic procaryotes that align and swim along geomagnetic field lines. They are of interest to astrobiologists because of the magnetite crystals found in the Mars meteorite ALH84001 which share many characteristics with the magnetite produced intracellularly by magnetotactic bacteria. These bacteria are diverse morphologically, physiologically and phylogenetically, sharing a few key characteristics: 1) the presence of intracellular membrane-bound magnetic crystals (magnetosomes), usually but not always arranged in chains; 2) motility by means of flagella; and 3) microaerophillic or anaerobic physiology. The bilophotrichous (having two flagella bundles) magnetotactic cocci (MC) are ubiquitous in aquatic habitats but have proven extremely difficult to cultivate. Because only several marine strains have been isolated and grown in axenic culture, little is known about the physiology and the biogeochemical roles of the MC. We studied the composition and distribution of intracellular structures in an uncultured MC, designated ARB-1. To do this, a combination of light microscopy, environmental scanning electron microscopy (ESEM), transmission electron microscopy (TEM) and energy dispersive X-ray spectroscopy (EDS) were used. Cells of ARB-1 were separated from sediments collected from Baldwin Lake (Los Angeles Arboretum, Arcadia, CA). They are large spherical to oblate spheroidal Gram-negative cells, ranging from 1 to 4 micrometers along the maximum dimension, which is perpendicular to the direction of swimming. Cells have two large phosphorus-containing inclusions that comprise a large percentage of the cell volume. Many smaller sulfur inclusions are located at the convex end of the cell. Most of the cellular Fe is present in the magnetosomes. These may be arranged as a clump at the concave end of the cell, near the two flagella bundles, or as chains, or as both a clump and chains. The magnetosomes were identified as magnetite (Fe3O4) by selected area electron diffraction (SAED) and high resolution TEM. We saw a trend between cell size and organization of the magnetosomes. Smaller, more spherical cells were more likely to have chains than were larger, more oblate cells. This may indicate different populations of cells, or it may be attributed to variations in cell growth cycle. The size distribution (length) of magnetosomes in chains was similar to that of magnetosomes in clusters, except that there was a larger size range for clustered magnetosomes. Magnetosomes from ARB-1 cells average 82 nm in length. If plotted on a graph of length as a function of aspect ratio, they fall within the single domain region of the plot. If compared with the size distributions of magnetite from ALH84001 and magnetosomes from the cultured magnetotactic vibrio MV-1, the magnetites produced by ARB-1 cells are, on average, larger and have a wider range of aspect ratio. ARB-1 cells have a specific organization of the P, S, and Fe inclusions. The P inclusions always occupy the majority of the cell volume and separate the S inclusions from the disorganized clumps of magnetosomes and the flagella bundles. The P inclusions may contain polyphosphate, which could play several roles in motility, adaptation to stress, growth and division, buoyancy, and energy. The S inclusions might be a way to store S, a potential energy source, when the cells move from sulfide to oxygen zones. The consistency of P, S, and Fe organization in ARB-1 cells suggests that these inclusions have some specific and interactive functions.

Cox, Lea↗

Efficient Reformulation of the Thermoelastic Higher-order Theory for Fgms

Functionally graded materials (FGMs) are characterized by spatially variable microstructures which are introduced to satisfy given performance requirements. The microstructural gradation gives rise to continuously or discretely changing material properties which complicate FGM analysis. Various techniques have been developed during the past several decades for analyzing traditional composites and many of these have been adapted for the analysis of FGMs. Most of the available techniques use the so-called uncoupled approach in order to analyze graded structures. These techniques ignore the effect of microstructural gradation by employing specific spatial material property variations that are either assumed or obtained by local homogenization. The higher-order theory for functionally graded materials (HOTFGM) is a coupled approach developed by Aboudi et al. (1999) which takes the effect of microstructural gradation into consideration and does not ignore the local-global interaction of the spatially variable inclusion phase(s). Despite its demonstrated utility, however, the original formulation of the higher-order theory is computationally intensive. Herein, an efficient reformulation of the original higher-order theory for two-dimensional elastic problems is developed and validated. The use of the local-global conductivity and local-global stiffness matrix approach is made in order to reduce the number of equations involved. In this approach, surface-averaged quantities are the primary variables which replace volume-averaged quantities employed in the original formulation. The reformulation decreases the size of the global conductivity and stiffness matrices by approximately sixty percent. Various thermal, mechanical, and combined thermomechanical problems are analyzed in order to validate the accuracy of the reformulated theory through comparison with analytical and finite-element solutions. The presented results illustrate the efficiency of the reformulation and its advantages in analyzing functionally graded materials.

Bansal, Yogesh↗

Charm and Charmonium Spectroscopy at BaBar

In the last few years many new unexpected new particles have been discovered in the analysis of B-factories data. In the charm sector, the newly discovered D{sub s} mesons are difficult to explain within potential models. In the charmonium sector, the large variety of new states are difficult to accommodate in the quark model and some of them are candidates for being hybrids or 4-quark states. Results will be presented on charm and charmonium spectroscopy from BaBar experiment using inclusive e{sup +}e{sup -} interactions, B decays and exclusive ISR reactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Neutrino-argon cross-section measurements from the MicroBooNE experiment

MicroBooNE is a liquid argon time projection chamber (LArTPC) neutrino detector located along the Fermilab Booster Neutrino Beam and 8 degrees off-axis to the Neutrinos at the Main Injector beam. MicroBooNE collected data from both beams accumulating a large neutrino-argon scattering dataset containing hundreds of thousands of events. Understanding neutrino-argon interactions is crucial for the next generation of neutrino oscillation experiments including DUNE. MicroBooNE has developed pioneering methodologies and novel reconstruction tools in order to benchmark models at very high sensitivity across the interaction phase space, including for ultra-rare channels. This proceeding presents an overview of the most recent MicroBooNE neutrino interaction results. These measurements span inclusive, CC0$π$, and rare channels including $Λ$, $K^+$ and $η$ production, providing invaluable datasets for constraining backgrounds and improving the modeling of neutrino scattering critical for the broader LArTPC neutrino physics program.

Liu, Liang [Fermilab] (ORCID:000000026753925X)↗

Wandering in the Lyman-alpha forest: a study of dark matter-dark radiation interactions

The amplitude of large-scale matter fluctuations inferred from the observed Sunyaev-Zeldovich (SZ) cluster mass function and from weak gravitational lensing studies, when taken at face value, is in tension with measurements of the cosmic microwave background (CMB) and baryon acoustic oscillation (BAO). In this work, we revisit whether this possible discrepancy can be attributed to new interactions in the dark matter sector. Focusing on a cosmological model where dark matter interacts with a dark radiation species until the epoch of matter-radiation equality, we find that measurements of the Lyman-alpha flux power spectrum from the Sloan Digital Sky Survey provide no support to the hypothesis that new dark matter interactions can resolve the possible tension between CMB and large-scale structure (LSS). Indeed, while the addition of dark matter-dark radiation interactions leads to an improvement of 2ΔlnL=12 with respect to the standard Λ cold dark matter (ΛCDM) model when only CMB, BAO, and LSS data are considered, the inclusion of Lyman-alpha data reduces the improvement of the fit to 2ΔlnL=6 relative to ΛCDM . We thus conclude that the statistical evidence for new dark matter interactions (largely driven by the Planck SZ dataset) is marginal at best, and likely caused by systematics in the data. We also perform a Fisher forecast analysis for the reach of a future dataset composed of a CMB-S4 experiment combined with the Large Synoptic Survey Telescope galaxy survey. We find that the constraint on the effective number of fluid-like dark radiation species, Δ N {sub fluid}, will be improved by an order of magnitude compared to current bounds.

79 ASTRONOMY AND ASTROPHYSICS↗

On the importance of direct detection combined limits for spin independent and spin dependent dark matter interactions

In this work we show how the inclusion of dark matter (DM) direct detection upper bounds in a theoretically consistent manner can affect the allowed parameter space of a DM model. Traditionally, the limits from DM direct detection experiments on the elastic scattering cross section of DM particles as a function of their mass are extracted under simplifying assumptions. Relaxing the assumptions related to the DM particle nature, such as the neutron to proton ratio of the interactions, or the possibility of having similar contributions from the spin independent (SI) and spin dependent (SD) interactions can vary significantly the upper limits. Furthermore, it is known that astrophysical and nuclear uncertainties can also affect the upper bounds. To exemplify the impact of properly including all these factors, we have analysed two well motivated and popular DM scenarios: neutralinos in the NMSSM and a Z' portal with Dirac DM. We have found that the allowed parameter space of these models is subject to important variations when one includes both the SI and SD interactions at the same time, realistic neutron to proton ratios, as well as using different self-consistent speed distributions corresponding to popular DM halo density profiles, and distinct SD structure functions. Finally, we provide all the necessary information to include the upper bounds of SuperCDMS and LUX taking into account all these subtleties in the investigation of any particle physics model. The data for each experiment and example codes are available at this site http://goo.gl/1CDFYi, and their use is detailed in the appendices of this work.

79 ASTRONOMY AND ASTROPHYSICS↗

Preliminary results from the MINERvA experiment

The MINERvA experiment, operating since 2009 in the NuMI neutrino beam line at Fermilab, has collected neutrino and antineutrino scattering data on a variety of nuclear targets. The detector is designed to identify events originating in plastic scintillator, lead, carbon, iron, water, and liquid helium. The goal of the experiment is to measure inclusive and exclusive cross sections for neutrino and antineutrino with much greater precision than previous experiments. We present preliminary kinematic distributions for charged current quasi-elastic scattering and other processes.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Recent Neutrino Cross Section Measurements from MicroBooNE

Next-generation precision measurements of neutrino properties will require carefully controlled systematic uncertainties, including theoretical uncertainties in models of neutrino-nucleus interactions. Despite their strengths as a neutrino detector technology, liquid argon time projection chambers (LArTPCs) employ a target material (argon) for which neutrino scattering cross sections remain largely unmeasured. To better constrain neutrino interaction uncertainties for future argon-based neutrino oscillation experiments, the MicroBooNE LArTPC experiment is pursuing a wide-ranging program of cross section measurements. These proceedings present some of the first physics results from that effort, including studies of inclusive charged-current $\nu_\mu$ interactions, neutral pion production, and multi-proton final states.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

ANNIE in 10 Minutes [Slides]

The Accelerator Neutrino Nucleus Interaction Experiment (ANNIE) has recently completed its first phase of data taking. The main physics goals of ANNIE, to be completed in the upcoming Phase II, are a measurement of the neutron abundance from neutrino-nucleus interactions, and a charged-current inclusive cross-section measurement on Oxygen. To achieve these goals the collaboration will use Gadolinium-loaded water to detect neutrons from a neutrino beam, and Large Area Picosecond Photodetectors (LAPPDs) for precise event reconstruction. Phase I used a simplified detector to perform measurements of the neutron flux from upstream interactions, a relevant background for Phase II measurements. This talk will present the results obtained and discuss the progress towards Phase II, scheduled to begin taking data in Fall 2018.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗