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At least 271 records · Page 15

BioWires: Conductive DNA Nanowires in a Computationally-Optimized, Synthetic Biological Platform for Nanoelectronic Fabrication

DNA is an ideal template for a biological nanowire-it has a linear structure several atoms thick; it possesses addressable nucleobase geometry that can be precisely defined; and it is massively scalable into branched networks. Until now, the drawback of DNA as a conducting nanowire been, simply put, its low conductance. To address this deficiency, we extensively characterize a chemical variant of canonical DNA that exploits the affinity of natural cytosine bases for silver ions. We successfully construct chains of single silver ions inside double-stranded DNA, confirm the basic dC-Ag+-dC bond geometry and kinetics, and show length-tunability dependent on mismatch distribution, ion availability and enzyme activity. An analysis of the absorbance spectra of natural DNA and silver-binding, poly-cytosine DNA demonstrates the heightened thermostability of the ion chain and its resistance to aqueous stresses such as precipitation, dialysis and forced reduction. These chemically critical traits lend themselves to an increase in electrical conductivity of over an order of magnitude for 11-base silver-paired duplexes over natural strands when assayed by STM break junction. We further construct and implement a genetic pathway in the E. coli bacterium for the biosynthesis of highly ionizable DNA sequences. Toward future circuits, we construct a model of transcription network architectures to determine the most efficient and robust connectivity for cell-based fabrication, and we perform sequence optimization with a genetic algorithm to identify oligonucleotides robust to changes in the base-pairing energy landscape. We propose that this system will serve as a synthetic biological fabrication platform for more complex DNA nanotechnology and nanoelectronics with applications to deep space and low resource environments.

DNA↗

Plasmaphere and plasmapause region characteristics as measured by DE-1

Thermal ion composition measurements by the retarding ion mass spectrometer (RIMS) on the Dynamics Explorer-1 have revealed new and intriguing features of the thermal ion distributions in the plasmasphere and plasmapause regions. Some of the interesting new findings include: the presence of intense fluxes of heated and equatorially-trapped light ions within the plasmapause region; the existence of a heavy ion 'torus' or 'shell' in the outer plasmasphere; and the relatively stable nature of the He(+)/(H+) concentration ratio within the plasmasphere. The relatively short orbital period of DE-1 has also allowed improved observations on the formation of the new outer plasmasphere during the recovery of geomagnetic storms. Statistical studies of the plasmaspheric density structure and boundaries are beginning to reveal a picture of their relation to other magnetospheric boundaries, such as the inner edge of the electron plasma sheet, and trends in the internal density structure of the plasmasphere.

Horwitz, J. L.↗

Pitch angle diffusion of newborn ions due to intrinsic turbulence in the solar wind

The objective of the present study is to understand the interaction of the solar wind with newborn ions in far upstream regions of a comet where the level of intrinsic turbulence is moderately low. Based on the assumption that quasi-linear theory is adequate and applicable, the pitch angle diffusion process and the time evolution of the newborn ion distribution function are investigated. Numerical solutions to the quasi-linear diffusion equation, including the effect of resonance broadening and that of continuous creation of newborn ions due to the ionization process, are obtained under several assumptions and approximations. It is found that theoretical results are consistent with the Giotto observations recently reported by Neugebauer et al. (1989).

Ziebell, L. F.↗

Energetic ionized helium in the quiet time radiation belts - Theory and comparison with observation

Theoretical calculations of helium ion distributions in the inner magnetosphere are compared to observations made by ATS-6 and Explorer-45. Coupled transport equations for equatorially mirroring singly and doubly ionized helium ions in the steady state limit with an outer boundary of L = 7 are solved. Radial profiles and energy spectra are computed at all lower L values. Theoretical quiet time predictions are compared to satellite observations of energetic helium ions in the lower MeV range. It is found that the theory adequately represents the principal characteristics of the radiation belt helium ion population.

Spjeldvik, W. N.↗

Ion-acoustic instabilities driven by an ion velocity ring

A ring distribution of ions in velocity space can generate electrostatic waves which propagate predominantly along an ambient magnetic field at frequencies comparable with the ion plasma frequency. A dispersion equation which accounts for these waves is presented, and solved analytically and numerically. It was found that ion-acoustic-like waves are excited in a plasma even if the electron temperature is comparable with the in temperature under the assumption of an anisotropic ion distribution.

Akimoto, K.↗

New ISTP Solar Max: A Multi-Spacecraft Study of the Flow of Ionospheric Plasma

The unique instrumentation on the Polar satellite combined with the simultaneous measurement of different parts of the magnetosphere with multiple satellites make possible the study of magnetospheric processes in a special way. In particular, the study of the ionospheric supply of plasma to the magnetosphere can by accomplished to give important results on the plasmas which drive the dynamics of the magnetosphere. This study concentrated on the period of September to December, 2001 in which the Polar orbit had precessed to the point that the line of apsides was near the equatorial plane. This unique orbital configuration enabled the TIDE instrument to measure outflowing ions across the polar cap and then transit the magnetotail lobes and observe the dramatic change in plasma characteristics as the satellite entered the plasma sheet. Contact was made with investigators on the Cluster and Geotail satellite missions and corresponding time frames were studied in the data. There were two approximate conjunctions between Polar and Geotail and data were compared to look for features which might be related. The higher energy concentration of the Geotail instrument made direct comparisons with TIDE difficult, and the Cluster measurements did not surface any cases that corresponded closely in space and time. There were, however, many interesting aspects of the Polar orbits which permitted the observation of the changing ionospheric outflowing plasma characteristics. As in earlier measurements, the ionospheric plasma could be seen flowing up the magnetic field lines out of the northern and southern polar caps. Its energy suggested a polar wind origin energized by the centrifugal acceleration of flow through the polar cusp. The roughly 10eV ions then moved out into the lobes of the magnetotail where they could be seen flowing toward the plasma sheet in both the northern and southern magnetotail lobes. There was also a double field-aligned region of warm ions observed just outside the plasmasphere, stretching toward the auroral zone and inner plasma sheet boundary. Upon entering the plasma sheet, the plasma energy jumped from 10 s of eV to greater than 1 keV. The single field aligned flows transitioned to highly variable spatially choppy energized ion distributions with a variety of pitch angle configurations. This pattern was quite repeatable in all of the Polar orbits that were examined and are compatible with the source of ions being the polar wind which is then energized to 10 s of eV by the centrifugal acceleration. These modestly energized polar wind ions are then carried to the magnetotail where they are substantially energized by the curvature drift-induced movement across the cross-tail potential of the magnetotail. This latter drift energizes the ions to the energies typically found in the plasma sheet. Subsequent drift and energization can cause the ions to become part of the ring current. The results of this study were presented at the Spring AGU meeting in 2002 and the GEM meeting in June 2003. They are the foundation for a paper that has been submitted by Matthew Huddleston to the Journal of Geophysical Research in December 2003. This work was part of the thesis that Matthew completed in finishing his Ph.D. in Physics at Vanderbilt University.

Chappell, Charles R.↗

The phase relationship between gyrophase-bunched ions and MHD-like waves

Recent calculations and computer simulations of the right-hand resonant ion beam instability have indicated that gyrophase-bunched ion distributions may be generated as a first step in the disruption of field-aligned beams. Theory predicts a distinct phase angle relationship between the gyrovelocity of the phase-bunched ions and the wave magnetic field. In this paper, observations of such a relationship between gyrophase-bunched ions and MHD-like waves upstream from the earth's bow shock are presented. The observed phases are in accord with the theoretical predictions of the right-hand resonant ion beam instability.

Fuselier, S. A.↗

Coincident observations of ionospheric troughs and the equatorial plasmapause

Electron-density observations made in the topside ionosphere by the Ariel 4 and Isis 2 satellites are examined in conjunction with results obtained by Explorer 45 when it traversed the near-equatorial plasmapause with one hour (both UT and MLT) of the Ariel and Isis traversals of the same L coordinate. Both dusk and night observations are analyzed, and an attempt is made to show that depressions in ionospheric electron density occur in the vicinity of the plasmapause field line. It is concluded that the electron distributions observed in the electron-density troughs at 550 km near dusk by Ariel and at 1400 km near midnight by Isis do not always parallel variations in the light-ion distribution inferred from the Explorer plasmapause traversals and that there appears to be no specific feature of the main ionospheric trough which can be used to identify the plasmapause field line except in a statistical sense.

Grebowsky, J. M.↗

Low-energy (less than 100 eV) ion pitch angle distributions in the magnetosphere by ISEE 1

Attention is given to isotropic distribution, bidirectional field alignment distribution, unidirectional field alignment distribution, and low flux, in a statistical examination of low energy ion data from the ISEE 1 plasma composition experiment whose aim was the study of pitch angle distributions in all local times of the magnetosphere. The isotropic distribution consisting of less than 10 eV ions is a persistent inner region feature, while the bidirectional field-aligned distribution consisting of warm ions is a persistent feature of the outer dayside and is seen just outside the isotropic distribution region of the nightside. On the outer nightside, the unidirectional field-aligned distribution consisting of warm ions is the dominant signature. The 'sources' of ions in various regions are discussed in view of the present and other results.

Johnson, J. F. E.↗

SALSAA: a statistical approach to line shapes from an average atom

Ion-Stark line broadening is a key density diagnostic for hot dense plasmas relevant to inertial fusion and astrophysics. It is caused by interactions of a radiating ion with nearby perturbing ions, whose electric microfields lead to changes in bound-bound transition energies. Ion-Stark broadening becomes increasingly difficult to compute for complex, many-electron ions with myriad transitions. In this paper, we propose a simplified approach to ion-Stark broadening based on self-consistent ion distributions and electronic structure from an average-atom model. We find that this approach reproduces the line shape predictions of one traditional method for high-n K-shell emission lines in aluminum ions with accuracy sufficient for density diagnostics in thermal plasmas with equal ion and electron temperatures. We expect that this approach can be extended to provide a reasonable picture of ion-Stark broadening in many-electron ions, enabling rapid calculations of line profiles in complex spectra.

average-atom↗

Ram ion scattering caused by Space Shuttle v x B induced differential charging

Observations of secondary, high-inclination ions streams have been reported in the literature. The authors of these previous papers attributed the source of the secondary ions to a disturbed region in the plasma about 10 m from the Space Shuttle Orbiter. A new theory has been developed which shows how v x B induced differential charging on the plasma diagnostics package (PDP) can scatter the ram ion flux. Some of these ions are reflected back to the PDP and may be the sorce of the observed ion distributions. The effect is unique to large spacecraft; it occurs only when the magnitude of the induced v x B potentials are much larger than the electron thermal energy and of the order of the ion ram energy. That the ion streams observed at large angles must have been reflected from the PDP surface is demonstrated with three-dimensional sheath and particle trajectory calculations using the low earth orbit version of the NASA Charging Analyzer Program (NASCAP/LEO).

Katz, I.↗

Comparison of upstream phenomena at Venus and Earth

The region upstream of a planetary bow shock, known as the foreshock, contains a variety of phenomena. Electrons and ions are reflected and energized at the shock. As these stream back upstream, they generate both VLF and ULF waves. Studies of the terrestrial foreshock have provided most of our understanding of these phenomena. However, comparisons with other planetary foreshocks are beneficial, even though the instrumentation used to provide the data may be less sophisticated than that flown on Earth orbiting spacecraft. In particular, maps of the VLF emissions upstream of the Venus bow shock, using data acquired by the Pioneer Venus Orbiter are particularly illuminating. These maps show that the tangent field line is clearly marked by the presence of plasma oscillations. Of additional interest is evidence that the emissions only extend some 15 Venus radii away from the shock, indicating that the emissions are controlled by the shock scale size. Lower frequency ion acoustic waves are observed deep in the ion foreshock. Only close to the shock do both the ion acoustic waves and ULF waves occur simultaneously. The ULF waves mark the ion foreshock boundary where ion beams should be present. The ion acoustic waves tend to be observed further downstream, where diffuse ion distributions are expected to occur. A similar mapping of the terrestrial foreshock, using data from the ISEE-3 spacecraft shows similar results for the electron foreshock. An extensions of this study to include ULF and ion acoustic waves would be helpful.

Strangeway, R. J.↗

Experimental and computational study of phase space dynamics in strongly coupled plasmas with steep density gradients

Understanding how plasmas thermalize when density gradients are steep remains a fundamental challenge in plasma physics, with direct implications for fusion experiments and astrophysical phenomena. Standard hydrodynamic models break down in these regimes, and kinetic theories make predictions that have never been directly tested. Here, we present the first detailed phase-space measurements of a strongly coupled plasma as it evolves from sharp density gradients to thermal equilibrium. Using laser-induced fluorescence imaging of an ultracold calcium plasma, we track the complete ion distribution function f(x,v,t). We discover that commonly used kinetic models (Bhatnagar–Gross–Krook and Lenard–Bernstein) overpredict thermalization rates, even while correctly capturing the initial counterstreaming plasma formation. Our measurements reveal that the initial ion acceleration response scales linearly with electron temperature, and that the simulations underpredict the initial ion response. In our geometry we demonstrate the formation of well-controlled counterpropagating plasma beams. This experimental platform enables precision tests of kinetic theories and opens new possibilities for studying plasma stopping power and flow-induced instabilities in strongly coupled systems.

Bergeson, Scott (ORCID:0000000231249226)↗

A simple method for obtaining a three-dimensional proton distribution function from Voyager plasma data

The main sensor of the Vogager plasma experiment consists of a cluster of three, modulated-grid Faraday cups whose normals are arranged symmetrically about the symmetry axis of the cluster at an angle of 20 degrees to that axis. In interplanetary space, each cup explores the positive ion distribution by accepting particles from contiguous slices in velocity space. The slices are narrow in the direction of the normal to the modulating grid but are broad in planes parallel to that grid. The resulting three sets of measurements can be combined to yield the three-dimensional distribution function in the following way: the distribution function is assumed to be gyrotropic. For each value of speed in a frame of reference moving with the bulk velocity of the solar wind, the variation of the distribution function with angle from the field direction is represented by a series of Legendre polynomials. Effects such as double-streaming and heat flow can be well represented by using only the first three terms of the series which are fully specified by the measurements. Examples of the use of this method in the analysis of Voyager data are shown.

Olbert, S.↗

Another look at equatorial metallic ions in the F region

An extensive survey is made of the equatorial occurrences of the Fe+ ion as detected by the ion mass spectrometer on the Atmospheric Explorer E. The longest time period (4 years) data base available for the study of the equatorial metallic ion distributions is considered, as well as Fe+ concentrations exceeding 10, 30, and 100 per cubic cm. The number of occurrences in the F region are most frequent at the dayside dip equator. Diurnally, the events are not appreciable in the F region until a few hours after dawn, reaching a maximum near noon followed by a secondary maximum in the afternoon. Near and after dusk the Fe+ ions extended on the average to higher altitudes than during the day and became less and less frequent from midnight to dawn. Seasonally, the distributions between 200 and 300 km are skewed away from the dip equator during the day with the maximum frequency of occurrence north (south) of the dip equator during a period centered on the December (June) solstice.

Grebowsky, J. M.↗

The effect of wave-particle interactions on the polar winds O(+)

The escape of the polar wind plasma is an important element in the ionosphere-magnetosphere coupling. Both theory and observations indicate that the wave-particle interactions (WPI) play a significant role in the dynamics of ion outflow along open geomagnetic field lines. A Monte Carlo simulation was developed in order to include the effect of the WPI in addition to the factors that are traditionally included in the 'classical' polar wind (i.e. gravity, electrostatic field, and divergence of geomagnetic field lines). The ion distribution function (f(sub j)), as well as the profiles of its moments (density, drift velocity, temperature, etc.) were found for different levels of WPI, that is, for different values of the normalized diffusion rate in the velocity space (D(tilde) (sub j perpendicular). Although the model included O(=), H(+) and eletrons, we presented only the results related to the O(+) ion. We found that (1) both the density and drift velocity of O(+) increased with the WPI strength, and consequently, the O(+) escape flux was enhanced by a factor of up to 10(exp 5), (2) The O(+) ions could be energized up to a few electron volts; (3) for moderate and high levels of WPI D(tilde) (sub perpendicular) (O(+) greater than (tilde) 1, the distribution function f(O(+)) displayed very pronounced conic features at altitudes around 3 R(sub e). Finally, the interplay between the downward body force, the upward mirror force, and the perpendicular heating resulted in the formation of the 'pressure cooker' effect. This phenomena explained some interesting features of our solution, such as, the peak in the O(=) temperature, and the formation of 'ears' and conics for f(O(+)) around 2.5 R(sub e).

Barakat, A. R.↗

Nonlinear Landau damping and Alfven wave dissipation

Nonlinear Landau damping has been often suggested to be the cause of the dissipation of Alfven waves in the solar wind as well as the mechanism for ion heating and selective preacceleration in solar flares. We discuss the viability of these processes in light of our theoretical and numerical results. We present one-dimensional hybrid plasma simulations of the nonlinear Landau damping of parallel Alfven waves. In this scenario, two Alfven waves nonresonantly combine to create second-order magnetic field pressure gradients, which then drive density fluctuations, which in turn drive a second-order longitudinal electric field. Under certain conditions, this electric field strongly interacts with the ambient ions via the Landau resonance which leads to a rapid dissipation of the Alfven wave energy. While there is a net flux of energy from the waves to the ions, one of the Alfven waves will grow if both have the same polarization. We compare damping and growth rates from plasma simulations with those predicted by Lee and Volk (1973), and also discuss the evolution of the ambient ion distribution. We then consider this nonlinear interaction in the presence of a spectrum of Alfven waves, and discuss the spectrum's influence on the growth or damping of a single wave. We also discuss the implications for wave dissipation and ion heating in the solar wind.

Vinas, Adolfo F.↗

Cometary ion flow variations at Comet P/Halley as observed by the Giotto IMS experiment

The moments of the cometary-ion distributions are determined through a three-dimensional analysis of the Giotto IMS high-intensity spectrometer (HIS) data. The spectrometer is described, with emphasis on its angle analyzer and mass analyzer. The method of data analysis is outlined, with ion-flow vectors and temperatures being addressed. The results of the water group ion-flow profile are presented, and it is noted that, after crossing the cometopause region, the ions become gradually colder. At cometocentric distances larger than 130,000 km, the cometary-ion temperature is found to be in the area of 100 eV or higher, and derivations of the flow parameters are uncertain. The ion temperature and the flow speed become lower by about 50 eV after crossing the magnetic pile-up boundary. It is concluded that the observed velocity and temperature profiles can be explained on the basis of charge exchange processes.

Kettmann, G.↗