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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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We describe results, products, papers, and achievement of the DOE AI/ML HEP grant "Accelerating cosmological inference for LSST and DESI with neural networks"
Introduction: Microalgae constitute a prominent feedstock for producing biofuels and biochemicals by virtue of their prolific reproduction, high bioproduct accumulation, and the ability to grow in brackish and saline water. However, naturally occurring wild type algal strains are rarely optimal for industrial use; therefore, bioengineering of algae is necessary to generate superior performing strains that can address production challenges in industrial settings, particularly the bioenergy and bioproduct sectors. One of the crucial steps in this process is deciding on a bioengineering target: namely, which gene/protein to differentially express. These targets are often orthologs which are defined as genes/proteins originating from a common ancestor in divergent species. Although bioinformatics tools for the identification of protein orthologs already exist, processing the output from such tools is nontrivial, especially for a researcher with little or no bioinformatics experience. Methods: The present study introduces AlgaeOrtho, a user-friendly tool that builds upon the SonicParanoid orthology inference tool (based on an algorithm that identifies potential protein orthologs based on amino acid sequences) and the PhycoCosm database from JGI (Joint Genome Institute) to help researchers identify orthologs of their proteins of interest in multiple diverse algal species. Results: The output of this application includes a table of the putative orthologs of their protein of interest, a heatmap showing sequence similarity (%), and an unrooted tree of the putative protein orthologs. Notably, the tool would be instrumental in identifying novel bioengineering targets in different algal strains, including targets in not-fully annotated algal species, since it does not depend on existing protein annotations. We tested AlgaeOrtho using three case studies, for which orthologs of proteins relevant to bioengineering targets, were identified from diverse algal species, demonstrating its ease of use and utility for bioengineering researchers. Discussion: This tool is unique in the protein ortholog identification space as it can visualize putative orthologs, as desired by the user, across several algal species.
Strong gravitational lenses are a singular probe of the Universe’s small-scale structure—they are sensitive to the gravitational effects of low-mass (<10 10 M ⊙ ) halos even without a luminous counterpart. Recent strong-lensing analyses of dark matter structure rely on simulation-based inference (SBI). Modern SBI methods, which leverage neural networks as density estimators, have shown promise in extracting the halo-population signal. However, it is unclear whether the constraints from these models are limited by the methodology or the data. In this study, we introduce an accelerator-optimized simulation pipeline that can generate lens images with realistic subhalo populations in milliseconds. Leveraging this simulator, we identify the main limitation of our fiducial SBI analysis: training set size. We then adopt a sequential neural posterior estimation (SNPE) approach, allowing us to refine the training distribution to align with the observed data. Using only one-fifth as many mock Hubble Space Telescope images, SNPE matches the constraints on the low-mass halo population produced by our best nonsequential model. Our experiments suggest that an over 3 order-of-magnitude increase in training set size and GPU hours would be required to achieve an equivalent result without sequential methods. While the full potential of the existing lens sample remains to be explored, the notable improvement in constraining power enabled by our sequential approach highlights that current constraints are limited primarily by methodology and not the data itself. Moreover, our results emphasize the need to treat training set generation and model optimization as interconnected stages of any cosmological analysis using SBI.
Observations of GW170817 strongly suggest that binary neutron star (BNS) mergers produce rapid neutron-capture nucleosynthesis ( r -process) elements. However, it remains an open question whether these mergers can account for all the r -process element enrichment in the Milky Way’s history. Here, we constrain the contributions of the BNS channel using astrophysical neutron star observations. The rate and mass distributions are constrained by LIGO/Virgo/Kagra through the latest catalog GWTC-3, the neutron star equation of state by gravitational-wave, radio, and X-ray observations, and the delay time distribution by short gamma-ray burst (GRB) host galaxy associations. We present a Bayesian framework to consistently combine these observations with abundance information to quantify the contribution and uncertainties of single and multiple astrophysical enrichment sources, and obtain a distribution of per-event BNS r -process element yields consistent with geophysical and astrophysical abundance constraints. We then adopt a Galactic chemical evolution model assuming an instantaneous and fixed amount of Fe enrichment from core-collapse supernovae, and show that BNS-only enrichment scenarios remain inconsistent with the observed r-process abundance trend of disk stars in the Galaxy even with the uncertainties in BNS merger observations. Using stellar abundance observations instead of the short GRB constraints, we can infer a shorter BNS delay time distribution with power-law index α ≤ −2.0 and minimum delay time ${t}_{{\rm{\min }}}\leqslant 40$ Myr at 90% confidence, consistent with detailed Galactic chemical evolution models. Such delay times are in tension with those predicted by standard BNS formation models. Alternatively, we confirm that a two-channel scenario, in which the second channel tracks the star formation history without significant delay, can account for both Galactic stellar and short GRB observations. We estimate that 45%–90% of the r -process abundance in the Milky Way today would have been produced by this star formation-tracking channel, rather than BNS mergers with significant delay times.
The galaxy–halo connection traces processes by which galaxies form and evolve. The halo occupation distribution (HOD) describes the relationship between galaxies and their host dark matter haloes. Measurements of the galaxy two-point correlation function (2PCF) allow us to extract information about the HODs of observed galaxy samples. Several parametric HOD models have been proposed in the literature, but the choice of parameterization restricts the space of possible HODs. To resolve this issue, we introduce a nonparametric HOD fitting method in which we train an emulator to learn the mappings among the galaxy 2PCF, physical properties used to select galaxy samples, and the HOD, all obtained from simulated past light cones constructed with the Santa Cruz semianalytic model. Implementing this emulator within a likelihood analysis framework, we derive constraints on the HOD of a galaxy sample when provided with a measurement of its 2PCF. Using the emulator to accelerate likelihood evaluations, we test the nonparametric HOD approach on a set of 2PCFs for mock galaxy samples drawn from the TNG100-1 simulation and selected above threshold values of stellar mass and star formation rate. Our framework is able to recover TNG100-1 HODs within 0.2 dex. We use the TNG100-1 mocks to tune the reported uncertainties to estimate those expected in the analysis of observations. Comparing to parametric HOD modelling routines applied to the same mock galaxy samples, our approach consistently infers the HOD with comparable or greater precision and accuracy.
The increasing data rates and complexity of detectors at the Large Hadron Collider (LHC) necessitate fast and efficient machine learning models, particularly for rapid selection of what data to store, known as triggering. Building on recent work in differentiable logic gates, we present a public implementation of a Convolutional Differentiable Logic Gate Neural Network (CLGN). We apply this to detecting anomalies at the Level-1 Trigger at CMS using public data from the CICADA project. We demonstrate that the CLGN achieves physics performance on par with or superior to conventional quantized neural networks. We also synthesize an LGN for a Field-Programmable Gate Array (FPGA) and show highly promising FPGA characteristics, notably zero Digital Signal Processor (DSP) resource usage. This work highlights the potential of logic gate networks for high-speed, on-detector inference in High Energy Physics and beyond.
Bayesian estimation, decision theory, least squares method, maximum likelihood, and other mathematical techniques of statistical inference theory
Magnetospheric convection patterns inferred from high latitude ionospheric currents - use and limitations of convection models
Lunar surface composition inferred from optical properties, comparing lunar crust with rock and meteorite powders characteristics
Computer program used to infer atmospheric water-vapor mixing ratio from measured horizon radiance profiles
Heuristic Dendral program to mechanize inductive inference in organic chemistry to determine isomers in chemical compounds
Inference of temperature and water vapor structure in stratosphere from limb radiance profiles
Response bias explanation of conservative human inference
Preliminary petrologic inferences from crystalline rocks collected at Mare Tranquillitatis by Apollo 11 crew
Jupiter atmosphere physical properties inferred from photometry of Galilean satellite eclipses
Incomplete historical data to infer state of atmosphere based on global circulation model, noting tradeoff of temperature for wind and time for space
Reduction and analysis of electron content measurements permitting inference of electron density in solar wind
Inferring origin of solar system from studying properties of meteorites