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At least 271 records · Page 15

Left-handed Z-DNA: structure and function

Z-DNA is a high energy conformer of B-DNA that forms in vivo during transcription as a result of torsional strain generated by a moving polymerase. An understanding of the biological role of Z-DNA has advanced with the discovery that the RNA editing enzyme double-stranded RNA adenosine deaminase type I (ADAR1) has motifs specific for the Z-DNA conformation. Editing by ADAR1 requires a double-stranded RNA substrate. In the cases known, the substrate is formed by folding an intron back onto the exon that is targeted for modification. The use of introns to direct processing of exons requires that editing occurs before splicing. Recognition of Z-DNA by ADAR1 may allow editing of nascent transcripts to be initiated immediately after transcription, ensuring that editing and splicing are performed in the correct sequence. Structural characterization of the Z-DNA binding domain indicates that it belongs to the winged helix-turn-helix class of proteins and is similar to the globular domain of histone-H5.

Review↗

Three-dimensional, time-dependent MHD simulations of interplanetary plasmoids

The paper presents a three-dimensional time-dependent simulation of a solar-ejected diamagnetic plasmoid that retains its closed topology to and beyond earth. It is assumed in this case that, before entering the computational domain, the plasmoid already exists at or near the sun. A simulation is also presented for a plasmoid that is formed in the corona near the sun or in the interplanetary medium as a consequence of the reconnection of opposite-directed IMF lines. The plasma and magnetic properties of the expanding plasmoid as it moves toward an observer at 1 AU are described.

Dryer, M.↗

Determining structural performance

An overview of the methods and concepts developed to enhance and predict structural dynamic characteristics of advanced aeropropulsion systems is presented. Aeroelasticity, vibration control, dynamic systems, and computational structural methods are four disciplines that make up the structural dynamic effort at LeRC. The aeroelasticity program develops analytical and experimental methods for minimizing flutter and forced vibration of aerospace propulsion systems. Both frequency domain and time domain methods were developed for applications on the turbofan, turbopump, and advanced turboprop. In order to improve life and performance, the vibration control program conceives, analyzes, develops, and demonstrates new methods for controlling vibrations in aerospace systems. Active and passive vibration control is accomplished with electromagnetic dampers, magnetic bearings, and piezoelectric crystals to control rotor vibrations. The dynamic systems program analyzes and verifies the dynamics of interacting systems, as well as develops concepts and methods for high-temperature dynamic seals. Work in this field involves the analysis and parametric identification of large, nonlinear, damped, stochastic systems. The computational structural methods program exploits modern computer science as an aid to the solutions of structural problems.

Ernst, Michael A.↗

Design of Energy Storage Reactors for Dc-To-Dc Converters

Two methodical approaches to the design of energy-storage reactors for a group of widely used dc-to-dc converters are presented. One of these approaches is based on a steady-state time-domain analysis of piecewise-linearized circuit models of the converters, while the other approach is based on an analysis of the same circuit models, but from an energy point of view. The design procedure developed from the first approach includes a search through a stored data file of magnetic core characteristics and results in a list of usable reactor designs which meet a particular converter's requirements. Because of the complexity of this procedure, a digital computer usually is used to implement the design algorithm. The second approach, based on a study of the storage and transfer of energy in the magnetic reactors, leads to a straightforward design procedure which can be implemented with hand calculations. An equation to determine the lower-bound volume of workable cores for given converter design specifications is derived. Using this computer lower-bound volume, a comparative evaluation of various converter configurations is presented.

Chen, D. Y.↗

Impact Of Rotation on the Sun’s Subsurface Structure

It is well known that the dynamical evolution of subsurface flows of the Sun and magnetic fields is strongly linked to rotation. Observational investigation of sub surface structuring and dynamics can be performed only with relatively low resolution using helioseismic inversion techniques. To confidently model the coupling of turbulent convection, magnetic fields, and rotation in the solar interior, we perform advanced radiative hydrodynamic and MHD modeling of local scales. To explore the coupling effects in the upper layers of the convection zone, we present results of analysis from a series of hydrodynamic simulations performed for a 25-Mm-deep computational domain at different latitudes obtained for 1) the Carrington rotation rate at all latitudes and 2) the realistic rotation rate from the global helioseismic inversions during the solar minimum. Using additional 3D radiative hydrodynamic models, we reveal how physical properties of the solar convection are affected by rotation.

Heliophysics↗

A Two-Dimensional Linear Bicharacteristic Scheme for Electromagnetics

The upwind leapfrog or Linear Bicharacteristic Scheme (LBS) has previously been implemented and demonstrated on one-dimensional electromagnetic wave propagation problems. This memorandum extends the Linear Bicharacteristic Scheme for computational electromagnetics to model lossy dielectric and magnetic materials and perfect electrical conductors in two dimensions. This is accomplished by proper implementation of the LBS for homogeneous lossy dielectric and magnetic media and for perfect electrical conductors. Both the Transverse Electric and Transverse Magnetic polarizations are considered. Computational requirements and a Fourier analysis are also discussed. Heterogeneous media are modeled through implementation of surface boundary conditions and no special extrapolations or interpolations at dielectric material boundaries are required. Results are presented for two-dimensional model problems on uniform grids, and the Finite Difference Time Domain (FDTD) algorithm is chosen as a convenient reference algorithm for comparison. The results demonstrate that the two-dimensional explicit LBS is a dissipation-free, second-order accurate algorithm which uses a smaller stencil than the FDTD algorithm, yet it has less phase velocity error.

Beggs, John H.↗

Application of physical parameter identification to finite-element models

The time domain parameter identification method described previously is applied to TRW's Large Space Structure Truss Experiment. Only control sensors and actuators are employed in the test procedure. The fit of the linear structural model to the test data is improved by more than an order of magnitude using a physically reasonable parameter set. The electro-magnetic control actuators are found to contribute significant damping due to a combination of eddy current and back electro-motive force (EMF) effects. Uncertainties in both estimated physical parameters and modal behavior variables are given.

Bronowicki, Allen J.↗

Solutions of the Helmholtz equation with boundary conditions for force-free magnetic fields

It is shown that the solution, with one ignorable coordinate, for the Taylor minimum energy state (resulting in a force-free magnetic field) in either a straight cylindrical or a toroidal geometry with arbitrary cross section can be reduced to the solution of either an inhomogeneous Helmholtz equation or a Grad-Shafranov equation with simple boundary conditions. Standard Green's function theory is, therefore, applicable. Detailed solutions are presented for the Taylor state in toroidal and cylindrical domains having a rectangular cross section. The focus is on solutions corresponding to the continuous eigenvalue spectra. Singular behavior at 90 deg corners is explored in detail.

Rasband, S. N.↗

Magnetoelastic sensing apparatus and method for remote pressure query of an environment

A pressure sensing apparatus for operative arrangement within an environment, having: a sensor comprising a hermetically-sealed receptacle, at least one side of which has an flexible membrane to which a magnetically hard element is attached. Enclosed within the receptacle is a magnetostrictive element that vibrates in response to a time-varying magnetic field. Also included is a receiver to measure a plurality of successive values for magneto-elastic emission intensity of the sensor taken over an operating range of successive interrogation frequencies to identify a resonant frequency value for the sensor. Additional features include: (a) the magnetically hard element may be adhered to an inner or outer side of, or embedded within, the membrane; (b) the magnetostrictive element can include one or more of a variety of different pre-formed, hardened regions; (c) the magneto-elastic emission may be a primarily acoustic or electromagnetic emission; and (d) in the event the time-varying magnetic field is emitted as a single pulse or series of pulses, the receiver unit can detect a transitory time-response of the emission intensity of each pulse (detected after a threshold amplitude value for the transitory time-response is observed). A Fourier transform of the time-response can yield results in the frequency domain. Also, an associated method of sensing pressure of an environment is included that uses a sensor having a magnetostrictive element to identify a magneto-elastic resonant frequency value therefore. Using the magneto-elastic resonant frequency value identified, a value for the pressure of the environment can be identified.

Grimes, Craig A.↗

The Effects of B/L-Dependent Heating on the Formation and Evolution of a Multi-Threaded Prominence

We have developed a comprehensive, multi-threaded, three-dimensional model of the plasma dynamics and energetics of a prominence and its overlying arcade (Luna et al. 2012). In this model, the basic magnetic structure is that of two interacting sheared arcades, while the cool condensations composing the prominence are formed by the well-studied thermal nonequilibrium mechanism. In a given filament-channel flux tube, the mass is evaporated from the chromosphere by heating localized near the footpoints, and condenses in the form of transient blobs or a persistent thread. Our previous studies of thermal nonequilibrium used steady or impulsive heating functions with no dependence on local physical. However, parametric active-region models with steady heating proportional to B/L, where B is the flux-tube magnetic field strength at each footpoint and L is the flux-tube length, yield the best agreement with observations (e.g., Schrijver et al. 2008). We have determined the effects of this active-region heating function on our model for the formation and evolution of prominence mass. We have also expanded the range of our computational domain to include more ofthe overlying arcade (the so-called "cavity") than in Luna et al. (2012), and have increased the number of selected flux tubes from 125 to 533. We will illustrate the time-dependent plasma behavior produced by the B/L heating function with synthetic images in several ALA passbands, and compare the resulting prominence properties with those predicted by our model with steady heating.

Karpen, Judith T.↗

On the Necessity and Feasibility of an Equatorial Magnetospheric Constellation

Synthesizing multi-point in-situ observations from the magnetosphere is the only way that we can retain an accurate knowledge of the driving mechanisms of convection and energy flow while "imaging" its vast volume. In addition to measuring the wavenumber of plasma instabilities thus opening up for study a previously unexplored domain of space plasma physics the Constellation mission can afford us a view of the rapid topological reconfigurations and the energy circulation throughout the astrophysical laboratory closest to human space activity. In this paper we argue that the deployment of approximately 80 autonomous micro-satellites (probes) to monitor the Earth's magnetosphere and measure the plasma and magnetic field in the near-equatorial magnetosphere is a necessary and sufficient condition for answering long standing, high priority questions regarding magnetospheric stability and dynamics. The proposed mission concept is technically feasible and fiscally modest. The probes can be raised from a Geosynchronous Transfer orbit to their final elliptical orbits with perigee approximately 3R(sub E)and apogees ranging from 12 to 42 R(sub E) by a single dispenser propelled by an ion engine. Each probe will weigh approximately 5 kg. The mission can form a cornerstone of an incrementally deployed Solar Terrestrial Probe Line Magnetospheric Constellation, as it requires no new technologies in the areas of spacecraft subsystems and instruments, but some development in the areas of dispenser design, probe packaging, mechanical release and spin-up. The technology developed can be utilized by follow-on Constellation class missions as well.

Angelopoulos, V.↗

The frequency dependence of the viscous component of the magnetic susceptibility of lunar rock and soil samples

The susceptibility of two lunar samples (a soil and a low metamorphic grade breccia) has been measured in a weak field - 0.001 Oe - and as a function of frequency from 0.032 to 1.0 Hz. The measurements were made using a superconducting magnetometer. The results show that the susceptibility decreases linearly with the log of frequency. This observation is in agreement with a theoretical model for viscous decay based on the Neel theory of single-domain and superparamagnetic grains. The relation derived agrees with a model in which there is a uniform distribution of relaxation times.

Hanneken, J. W.↗

Invariant two-dimensional structures of vorticity field in nonviscous fluid

It is shown that a fluid flow which are invariant under translations along their vorticity field directions can be described in terms of a formally 2D system. Its nonviscous behavior of the scalar vorticity is governed by Hamiltonian dynamics, similar to the 2D line vortex case. Applying a statistical mechanical method, the equilibrium distribution of the vorticity field for such a general 2D system is shown to obey a nonlinear partial differential equation that is a generalization of the sinh-Poisson equation derived by Montgomery and Joyce (1973, 1974). Thus, if the domain containing the fluid is finite, similar negative temperature states may occur and the distribution of the vorticity intensity may become localized in space. The results are believed to have applications in studying large-scale partial and temporal properties of flows having small but nonzero viscosity. The analysis can probably be extended to other fluid systems with curved magnetic field lines.

Chen, Hudong↗

Very high energy gamma rays from active galactic nuclei: Cascading on the cosmic background radiation fields and the formation of pair halos

Recent high-energy gamma-ray observations (E(sub gamma) greater than 100 MeV) of blazar Active Galactic Nuclei (AGNs) show emission spectra with no clear upper energy cutoff. AGNs, considered to be possible sources for the observed flux of cosmic rays beyond 10(exp 19) eV, may well have emission extending into the very high energy (VHE), (E(sub gamma) greater than 100 GeV) domain. Because VHE gamma-rays are absorbed by pair production on the intergalactic background radiation fields, much of this emission may not be directly visible. The electromagnetic cascades initiated by absorbed VHE gamma-rays, however, may be observable. Since, most probably, the velocities of (e(+), e(-)) pairs produced in a cascade are quickly isotropized by an ambient random magnetic field, extended 'halos' (R greater than 1 Mpc) of pairs will be formed around AGNs with VHE emission. The cascade radiation from these pair halos is emitted isotropically and should be observable at energies below a few TeV. The halo radiation can be distinguished by its characteristic variation in spectrum and intensity with angular distance from the central source. This variation depends weakly on the details of the central source model, e.g., the orientation and beaming/opening angle of an emitting jet. Limiting or determining the intensity of the pair halo can thus serve as a model-independent bound on or measure of the VHE power of AGNs. Next-generation Cherenkov telescopes may be able to image a pair halo.

Aharonian, F. A.↗

Modeling the Formation and Eruption of Coronal Structures by Linking Data-Driven Magnetofrictional and MHD Simulations for AR 12673

Context .The data-driven and time-dependent modeling of coronal magnetic fields is crucial for understanding solar eruptions. These efforts are complicated by the challenges of finding a balance between physical realism and computing efficiency. One possible technique is to couple two modeling approaches. Aims . Our aim here is to showcase our progress in using time-dependent magnetofrictional model (TMFM) results as input to dynamical magnetohydrodynamic (MHD) simulations. However, due to the different evolution processes in these two models, using TMFM snapshots in an MHD simulation is nontrivial. We address these issues, both physically and numerically, discuss the incompatibility of the TMFM output to serve as the initial condition in MHD simulations, and show our methods of mitigating this. The evolution of the flux systems and the cause of the eruption are investigated. Methods . TMFM is a prevalent approach that has proven to be a very useful tool in the study of the formation of unstable structures in the solar corona. In particular, it is capable of incorporating observational data as initial and boundary conditions and requires shorter computational time compared to MHD simulations. To leverage the efficiency of data-driven TMFM and also to simulate eruptive events in the MHD framework, one can apply TMFM up to a certain time before the expected eruption(s) and then proceed with the simulation in the full or ideal MHD regime in order to more accurately capture the eruption process. Results . We show the results of a benchmark test case with a linked TMFM and MHD simulation to study the evolution of NOAA active region 12673. A rise of a twisted flux bundle through the MHD simulation domain is observed, but we find that the rate of the rise and the altitude reached depends on the time of the TMFM snapshot that was used to initialize the MHD simulation and the helicity injected into the system. The analysis suggested that torus instability and slip-running reconnection could play an important role in the eruption. Conclusions . The results show that the linkage of TMFM and zero-β MHD models can be successfully used to model the eruptive coronal magnetic fields.

F. Daei↗

Implementing a bubble memory hierarchy system

This paper reports on implementation of a magnetic bubble memory in a two-level hierarchial system. The hierarchy used a major-minor loop device and RAM under microprocessor control. Dynamic memory addressing, dual bus primary memory, and hardware data modification detection are incorporated in the system to minimize access time. It is the objective of the system to incorporate the advantages of bipolar memory with that of bubble domain memory to provide a smart, optimal memory system which is easy to interface and independent of user's system.

Segura, R.↗

(abstract) 3D Electromagnetic Plasma Particle Simulations

A 3D electromagnetic plasma particle-in-cell code has been developed using the General Concurrent PIC algorithm. The GCPIC algorithm uses a domain decomposition to divide the computation among the processors. Particles must be exchanged between processors as they move. The efficiencies for 1-, 2-, and 3-dimensional partitions of the three dimensional domain are compared, and the algorithm is found to be very efficient even when a large fraction (e.g., 30%) of the particles must be exchanged at every time step. This PIC code has been used to perform simulations of a variety of space plasma physics problems. Results of three applications will be discussed: 1) plasma disturbances induced by moving conducting bodies in a magnetized plasma; 2) plasma plume interactions; and 3) solar wind termination shock.

electromagnetic plasma particles simulations 3D al↗

Formation of slow shock pairs associated with coronal mass ejections

The formation of a forward-reverse slow shock pair in the solar corona is presently simulated by an MHD model that uses the Rankine-Hugoniot solution to calculate the flow-property jumps at all shock crossings. The shocks divide the solution-domain into several continuous flow regions whose respective governing characteristics are solved by the method of characteristics. The plasma impact compresses the plasma near the front of the coronal mass ejection (CME); as the CME-associated slow shock pair moves outwards in interplanetary space, it evolves into a pair of fast shocks. All three phenomena are eventually manifested in interplanetary space as a magnetic cloud accompanied by a fast shock pair, with a forward shock preceding the cloud and a reverse shock appearing either within or behind the cloud.

Whang, Y. V.↗