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At least 271 records · Page 15

Evaluating Integrated Surface/Subsurface Permafrost Thermal Hydrology Models in ATS (v0.88) Against Observations from a Polygonal Tundra Site: Modeling Archive

This Modeling Archive supports the NGEE Arctic publication "Evaluating integrated surface/subsurface permafrost thermal hydrology models in ATS (v0.88) against observations from a polygonal tundra site" available in the Geoscientific Model Development journal. We evaluated the integrated surface/subsurface permafrost thermal hydrology models in the Advanced Terrestrial Simulator (ATS) against field observations in polygonal tundra at the Barrow Environmental Observatory. We simulated thermal hydrology of three-dimensional ice-wedge polygons with generic but broadly representative surface microtopography. We drove the simulations with meteorological data and observed water table elevations in ice-wedge polygon troughs. With limited calibration of the soil properties and evaporation model parameters, the simulations were found to be consistent with observed water tables, active layer thickness, snowpack depth, evaporation, and observed soil temperatures at several depths in trough, rim, and center. The study builds confidence in the emerging class of integrated surface/subsurface permafrost simulators and provides an optimized set of model parameters for use in projections of permafrost dynamics in a warming climate. This dataset includes python, html, pdf, EXO, H5, xlsx, and csv files. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Model Deformation Measurements of Sonic Boom Models in the NASA Ames 9- by 7-Ft Supersonic Wind Tunnel

The deformations of two sonic-boom models were measured by stereo photogrammetry during tests in the 9- by 7-Ft Supersonic Wind Tunnel at NASA Ames Research Center. The models were geometrically similar but one was 2.75 times as large as the other. Deformation measurements were made by simultaneously imaging the upper surfaces of the models from two directions by calibrated cameras that were mounted behind windows of the test section. Bending and twist were measured at discrete points using conventional circular targets that had been marked along the leading and trailing edges of the wings and tails. In addition, continuous distributions of bending and twist were measured from ink speckles that had been applied to the upper surfaces of the model. Measurements were made at wind-on (M = 1.6) and wind-off conditions over a range of angles of attack between 2.5 deg. and 5.0 deg. At each condition, model deformation was determined by comparing the wind-off and wind-on coordinates of each measurement point after transforming the coordinates to reference coordinates tied to the model. The necessary transformations were determined by measuring the positions of a set of targets on the rigid center-body of the models whose model-axes coordinates were known. Smoothly varying bending and twist measurements were obtained at all conditions. Bending displacements increased in proportion to the square of the distance to the centerline. Maximum deflection of the wingtip of the larger model was about 5 mm (2% of the semispan) and that of the smaller model was 0.9 mm (1% of the semispan). The change in wing twist due to bending increased in direct proportion to distance from the centerline and reached a (absolute) maximum of about -1 at the highest angle of attack for both models. The measurements easily resolved bending displacements as small as 0.05 mm and bending-induced changes in twist as small as 0.05 deg.

model deformation↗

Conditional Karhunen–Loève regression model with Basis Adaptation for high-dimensional problems: Uncertainty quantification and inverse modeling

Here, we propose a methodology for improving the accuracy of surrogate models of the observable response of physical systems as a function of the systems’ spatially heterogeneous parameter fields, with applications to uncertainty quantification and parameter estimation in high-dimensional problems. Practitioners often formulate finite-dimensional representations of spatially heterogeneous parameter fields using truncated unconditional Karhunen–Loève expansions (KLEs) for a certain choice of unconditional covariance kernel and construct surrogate models of the observable response with respect to the KLE coefficients. When direct measurements of the parameter fields are available, we propose improving the accuracy of these surrogate models by representing the parameter fields via conditional Karhunen-Loève expansions (CKLEs). CKLEs are constructed by conditioning the covariance kernel of the unconditional expansion on the direct measurements of the parameter field via Gaussian process regression, and then truncating the corresponding KLE. We apply the proposed methodology to constructing surrogate models via the Basis Adaptation (BA) method of the stationary hydraulic head response, measured at spatially discrete observation locations, of a groundwater flow model of the Hanford Site, as a function of the 1000-dimensional representation of the model’s log-transmissivity field. We find that BA surrogate models of the hydraulic head based on CKLEs are more accurate than BA surrogate models based on unconditional expansions for forward uncertainty quantification tasks. Furthermore, we find that inverse estimates of the hydraulic transmissivity field computed using CKLE-based BA surrogate models are more accurate than those computed using unconditional BA surrogate models.

97 MATHEMATICS AND COMPUTING↗

A guideline for appropriate application of vertically-integrated modeling approaches for geologic carbon storage modeling

Mathematical modeling is an essential tool for answering questions related to geologic carbon storage (GCS). The choice of modeling approach depends on the type of questions being asked. In this paper we discuss a series of approaches with a hierarchical complexity including vertically-integrated single-phase flow approaches, vertically-integrated multi-phase flow approaches (with and without vertical equilibrium assumption), three-dimensional multi-phase flow approaches, and fully-coupled multi-phase flow approaches that couple flow with geochemistry and/or geomechanics. Three spatial scales are used to categorize the questions to be addressed by modeling: regional scale (encompasses CO 2 plume extent and majority of area of pressure impact of one or more injection operations), site scale (includes the CO 2 plume extent and some of the area impacted by the pressure increase of a single injection site), and well scale (the immediate vicinity of an injection well). A set of guidelines is developed to help modelers choose the most appropriate modeling approach, and show when simpler modeling approaches may be the better choice. Vertically-integrated single-phase flow models are the most appropriate choice at both the site and regional scales, if the pressure impact outside of the CO 2 plume is of interest. Vertically-integrated multi-phase flow models should be chosen at the regional scale, if the locations of CO 2 plumes are of interest, and at the site scale if vertical segregation of CO 2 and brine is fast or vertical heterogeneity in properties can be presented by distinct, continuous layers. Three-dimensional multi-phase flow models are the appropriate choice at the well and site scales for cases with significant vertical flow components of CO 2 and brine. Fully-coupled multi-phase flow models should only be chosen if pore-space alteration through geochemistry or geomechanics feeds back to fluid flow.

42 ENGINEERING↗

Climate model projections from the Scenario Model Intercomparison Project (ScenarioMIP) of CMIP6

The Scenario Model Intercomparison Project (ScenarioMIP) defines and coordinates the main set of future climate projections, based on concentration-driven simulations, within the Coupled Model Intercomparison Project phase 6 (CMIP6). This paper presents a range of its outcomes by synthesizing results from the participating global coupled Earth system models. We limit our scope to the analysis of strictly geophysical outcomes: mainly global averages and spatial patterns of change for surface air temperature and precipitation. We also compare CMIP6 projections to CMIP5 results, especially for those scenarios that were designed to provide continuity across the CMIP phases, at the same time highlighting important differences in forcing composition, as well as in results. The range of future temperature and precipitation changes by the end of the century (2081–2100) encompassing the Tier 1 experiments based on the Shared Socioeconomic Pathway (SSP) scenarios (SSP1-2.6, SSP2-4.5, SSP3-7.0 and SSP5-8.5) and SSP1-1.9 spans a larger range of outcomes compared to CMIP5, due to higher warming (by close to 1.5 °C) reached at the upper end of the 5 %–95 % envelope of the highest scenario (SSP5-8.5). This is due to both the wider range of radiative forcing that the new scenarios cover and the higher climate sensitivities in some of the new models compared to their CMIP5 predecessors. Spatial patterns of change for temperature and precipitation averaged over models and scenarios have familiar features, and an analysis of their variations confirms model structural differences to be the dominant source of uncertainty. Models also differ with respect to the size and evolution of internal variability as measured by individual models' initial condition ensemble spreads, according to a set of initial condition ensemble simulations available under SSP3-7.0. These experiments suggest a tendency for internal variability to decrease along the course of the century in this scenario, a result that will benefit from further analysis over a larger set of models. Benefits of mitigation, all else being equal in terms of societal drivers, appear clearly when comparing scenarios developed under the same SSP but to which different degrees of mitigation have been applied. It is also found that a mild overshoot in temperature of a few decades around mid-century, as represented in SSP5-3.4OS, does not affect the end outcome of temperature and precipitation changes by 2100, which return to the same levels as those reached by the gradually increasing SSP4-3.4 (not erasing the possibility, however, that other aspects of the system may not be as easily reversible). Central estimates of the time at which the ensemble means of the different scenarios reach a given warming level might be biased by the inclusion of models that have shown faster warming in the historical period than the observed. Those estimates show all scenarios reaching 1.5 °C of warming compared to the 1850–1900 baseline in the second half of the current decade, with the time span between slow and fast warming covering between 20 and 27 years from present. The warming level of 2 °C of warming is reached as early as 2039 by the ensemble mean under SSP5-8.5 but as late as the mid-2060s under SSP1-2.6. The highest warming level considered (5 °C) is reached by the ensemble mean only under SSP5-8.5 and not until the mid-2090s.d-2090s.

Scenario Model Intercomparison Project (ScenarioMI↗

Assessment of a tomography-informed polyhedral discrete element modelling approach for complex-shaped granular woody biomass in stress consolidation

The design of handling equipment for granular biomass primarily requires experiments. Discrete element models (DEM) can provide designers with detailed insight into the behaviour of granular materials. However, granular biomass comprising complex-shaped particles is difficult to model with DEM. A tomography-informed DEM approach and an exhaustive assessment of the ability of the approach to predict the bulk behaviour of milled pines using experimental data is presented. Nano-CT scan was conducted to obtain 3D particle surface geometries as the basis for particle shape approximation by a polyhedral model and a sphero-polyhedral model. These models were applied in the simulation of a compressibility test. Our parametric study showed that particle Young's modulus and restitution coefficient are the two main properties influencing the simulated bulk behaviour of the DEM particles and that the level of approximating DEM particle shape for real particles is critical for accurately replicating the bulk behaviour of milled pines. The polyhedral model demonstrated better suitability than its sphero-polyhedral counterpart for modelling pine particles. The polyhedral model calibrated in a compressibility test was then applied in the simulations of a friction test without additional parameter tuning. Interlocking was dominant in the shear of bulk pine particles. Remarkably, the polyhedral model predicted the frictional behaviour of the pine particles when compared to the experimental results. The limitations of the model, as well as possible ways for enhancement, are discussed. This work provided novel insights into the suitability of complex-shaped DEM models for granular woody biomass.

Biomass flow↗

Role of Troposphere-Convection-Land Coupling in the Southwestern Amazon Precipitation Bias of the Community Earth System Model version 1 (CESM1)

The Amazon forest plays an important role in the tropical circulation and global water and biogeochemical cycles. However, the common Amazon precipitation biases in global climate models undermine our ability to understand future changes in the Amazon and their global consequences. The Community Earth System Model exhibits a persistent wet season dry bias over the southwestern Amazon. The bias is also characterized by inaccurate diurnal timing and intensity of rainfall events. Analysis of a diverse set of simulations suggests that the bias originates from local processes. A known land model bias in the partitioning of surface energy fluxes is found not to contribute significantly to the rainfall bias. Key model processes are identified to be the low-level divergent circulation controlling horizontal moisture flow and the sensitivity of the modeled deep convection to the lower tropospheric moisture. The lower tropospheric moisture divergence dictates the spatiotemporal distributions of convective precipitation through parameterized entrainment mixing, which generally improves the rainfall diurnal cycle. However, it also limits convective precipitation over the areas with frequent and large-scale divergence in the lower troposphere. The southwestern Amazon is such an area, particularly in the late afternoon, although uncertainty exists in the low-level flow in the simulation and reanalyses. One way to sustain rainfall in the presence of low-level divergence is a convective trigger based on both the moisture and temperature changes by large-scale processes, which is shown to help in reducing the dry bias.

Sakaguchi, Koichi↗

A Model Intercomparison Study of Aerosol‐Cloud‐Turbulence Interactions in a Cloud Chamber: 1. Model Results

This study presents the first model intercomparison of aerosol‐cloud‐turbulence interactions in a controlled cloudy Rayleigh‐Bénard Convection chamber environment, utilizing the Pi Chamber at Michigan Technological University. We analyzed simulated cloud chamber‐averaged statistics of microphysics and thermodynamics in a warm‐phase, cloudy environment under steady‐state conditions at varying aerosol injection rates. Simulation results from seven distinct models (DNS, LES, and a 1D turbulence model) were compared. Our findings demonstrate that while all models qualitatively capture observed trends in droplet number concentration, mean radius, and droplet size distributions at both high and low aerosol injection rates, significant quantitative differences were observed. Notably, droplet number concentrations varied by over two orders of magnitude between models for the same injection rates, indicating sensitivities to the model treatments in droplet activation and removal and wall fluxes. Furthermore, inconsistencies in vertical relative humidity profiles and in achieving steady‐state liquid water content suggest the need for further investigation into the mechanisms driving these variations. Despite these discrepancies, the models generally reproduced consistent power‐law relationships between the microphysical variables. This model intercomparison underscores the importance of controlled cloud chamber experiments for validating and improving cloud microphysical parameterizations. Recommendations for future modeling studies are also highlighted, including constraining wall conditions and processes, investigating droplet/aerosol removal (including sidewall losses), and conducting simplified experiments to isolate specific processes contributing to model divergence and reduce model uncertainties.

54 ENVIRONMENTAL SCIENCES↗

Machine Learning Augmented Predictive and Generative Model for Rupture Life in Ferritic and Austenitic Steels

The Larson-Miller parameter (LMP) offers an efficient and fast scheme to estimate the creep rupture life of alloy materials for high temperature applications. However, owing to poor generalizability and dependence on the constant C, which is typically not known a-priori, estimations using the Larson-Miller parameter often result in suboptimal performance for a wide range of materials. At best it is useful in comparing alloys of similar composition. In this work, three machine learning (ML) schemes were developed for rupture life prediction for 9-12% Cr ferritic-martensitic steels and austenitic stainless steels, i.e., a hierarchical model to parameterize LMP using the LMP constant C to compute rupture life, a hierarchical model to parameterize both C and LMP to compute rupture life, and a direct prediction of rupture life. Specifically, we show that the third scheme, using a gradient boosting algorithm, can be used to train ML models for very accurate prediction of rupture life in a variety of alloys (Pear-son Correlation Coefficient > 0.9 for 9-12% Cr and > 0.8 for austenitic stainless steels). In addition, the Shapley value was used to quantify feature importance, making the model interpretable by identifying the effect of various features on the model performance. Furthermore, a variational autoencoder-based generative model was built by conditioning on the experimental dataset to sample hypothetical synthetic candidate alloys from the learnt joint distribution not existing in both 9-12 % Cr ferritic-martensitic steel and austenitic stainless steel datasets. Finally, based on the predictive and generative model, a reinforcement learning strategy has been proposed to guide experimentalists into designing better heat resistant alloys.

Mamun, Md Osman G.↗

Surrogate modelling the Baryonic Universe II: On forward modelling the colours of individual and populations of galaxies

ABSTRACT Among the properties shaping the light of a galaxy, the star formation history (SFH) is one of the most challenging to model due to the variety of correlated physical processes regulating star formation. In this work, we leverage the stellar population synthesis model fsps, together with SFHs predicted by the hydrodynamical simulation IllustrisTNG and the empirical model universemachine, to study the impact of star formation variability on galaxy colours. We start by introducing a model-independent metric to quantify the burstiness of a galaxy formation model, and we use this metric to demonstrate that universemachine predicts SFHs with more burstiness relative to IllustrisTNG. Using this metric and principal component analysis, we construct families of SFH models with adjustable variability, and we show that the precision of broad-band optical and near-infrared colours degrades as the level of unresolved short-term variability increases. We use the same technique to demonstrate that variability in metallicity and dust attenuation presents a practically negligible impact on colours relative to star formation variability. We additionally provide a model-independent fitting function capturing how the level of unresolved star formation variability translates into imprecision in predictions for galaxy colours; our fitting function can be used to determine the minimal SFH model that reproduces colours with some target precision. Finally, we show that modelling the colours of individual galaxies with per cent-level precision demands resorting to complex SFH models, while producing precise colours for galaxy populations can be achieved using models with just a few degrees of freedom.

Chaves-Montero, Jonás (ORCID:0000000295534261)↗

Graph reinforcement learning for exploring model spaces beyond the standard model

We present a methodology for performing scans of beyond the standard model (BSM) parameter spaces with reinforcement learning. We identify a novel procedure using graph neural networks that is capable of exploring spaces of models without the user specifying a fixed particle content, allowing broad classes of BSM models to be explored—in theory, the technique is applicable to nearly any model space with a prespecified gauge group. We provide a generic procedure by which a suitable graph grammar can be developed for any BSM model that features user-specified symmetry groups and a finite number of different possible particle species, the use of which is applicable to a variety of machine learning tasks over the actions of BSM theories beyond our particular reinforcement learning use case. As a proof of concept, we construct the graph grammar for theories with vectorlike leptons that may or may not be charged under a dark U ( 1 ) group, inspired by portal matter extensions of the sub-GeV vector portal/kinetic mixing simplified dark matter models. We then use this graph grammar to create a reinforcement learning environment tasked with creating models with these vectorlike leptons that are consistent with a list of a variety of precision observables. The reinforcement learning agent succeeds in developing models that can address the observed muon anomalous magnetic moment discrepancy while remaining consistent with flavor violation and electroweak precision observables, including both constructions that have previously been studied as well as new models that have not, to our knowledge, previously been identified. By inspecting the resulting ensembles of models that the agent produces and experimenting with different configurations for our reinforcement learning environment and graph grammar, we also infer various lessons about the development of these environments that can be transferable to reinforcement learning scans of more complicated model spaces and comment on future directions for the development of this technique into a more mature tool. Published by the American Physical Society 2025

Wojcik, George N.↗

Two-Layer Dynamic Recycling Model (2L-DRM): Learning from Moisture Tracking Models of Different Complexity

Atmospheric moisture tracking models are used to identify and quantify sources and sinks of water in the atmospheric branch of the hydrologic cycle. These models are primarily used to investigate the origin of moisture resulting in precipitation for particular regions around the globe. Moisture tracking models vary widely in their level of complexity, depending on the number of physical processes represented. Complex models are comprehensive in their physical representation, but computationally much more expensive than simple models, which only focus on specific physical processes and use simplifying assumptions. We present the mathematical derivation of the new two-layer dynamical recycling model (2L-DRM), a simple analytical moisture tracking model that relaxes the vertically-integrated formulation of the original one-layer DRM (Dominguez et al., 2006). By comparing the simple DRM to a very complex moisture tracking model that uses water vapor tracers embedded within the Weather Research and Forecast regional climate model (WRF-WVT) for the North American Monsoon region, we pinpoint the absence of vertical wind shear as the main deficiency in the simple DRM. When comparing both simple models (DRM and 2L-DRM) to the WRF-WVT (which we treat as ‘truth’), the 2L-DRM better captures the spatial extent, the net amount and the temporal variability of precipitation that originates from oceanic and local terrestrial sources. The 2L-DRM is well suited to study the large-scale climatological sources of moisture, and for these applications, performs on-par with the much more complex and computationally demanding WRF-WVT model.

Dominguez, Francina↗

Grounding our Understanding of the Impacts of Boreal Forest Expansion on Shallow Cumulus Clouds with a Simple Modeling Framework

Abstract The expansion of the boreal forest poleward is a potentially important driver of feedbacks between the land surface and Arctic climate. A growing body of work has highlighted the importance of differences in evaporative resistance between different possible future Arctic land covers, which in turn alters humidity and cloudiness in the boundary layer, for these feedbacks. While thus far this problem has been studied primarily with complex Earth system models, we turn to a locally focused, idealized model capable of diagnosing and testing the sensitivity of first-order processes connecting vegetation, the atmospheric boundary layer, and low clouds in this critical region. This allows us to benchmark the mechanisms and results at the center of predictions from larger-scale simulations. A surface dominated by broadleaf trees, characterized by higher albedo and lower surface evaporative resistance, drives cooling and moistening of the boundary layer relative to a surface of needleleaf trees, characterized by lower albedo and higher surface evaporative resistance. Differences in evaporative resistance between these hypothetical Arctic vegetation covers are of equal importance to changes in albedo for the initial response of the boundary layer to boreal expansion, even with our idealized approach. However, compensation between the elevation of the lifting condensation level (LCL) and more rapid growth of the mixed layer over higher evaporative resistance surfaces can minimize changes in the favorability of shallow clouds over different land cover types under some conditions. We then perform two tests on the sensitivity of this compensating effect, to changes in water availability, represented first by a reduction in boundary layer humidity and then by both a reduction in humidity and soil moisture available to our vegetation surface. Finally, given the importance of this potential LCL–mixed-layer height compensation in our idealized modeling results, we look to determine its relevance in observational data from a field campaign in boreal Finland. These observations do confirm that such a coupling plays an important role in cumulus-topped boundary layers over a needleleaf forest surface. While our results confirm some underlying mechanisms at the center of prior work with Earth system models, they also provide motivation for future work to constrain the impact of boreal forest expansion. This will include both large eddy simulations to examine the impact of processes and feedbacks not resolved by a mixed-layer model, as well as a more systematic evaluation and comparison of relevant observations at the site in Finland and sites from prior boreal field campaigns. Significance Statement Clouds and vegetation are both important components of the climate system that interact across a range of scales. These interactions are central to understanding how changes at the land surface feedback on climate. For example, if a forest expands or recedes, diagnosing how that will impact clouds will determine whether you predict warming or cooling temperatures from that shift in the forest area. These predictions are often made with complex Earth system models, but we look to a more idealized representation of the land–atmosphere system to diagnose how shallow clouds should respond to changes in surface properties with different scenarios of boreal forest expansion at a more foundational level. This both grounds our understanding of previous analysis and provides helpful direction for future studies of this relevant and impactful land cover change.

Meteorology & Atmospheric Sciences↗

Measurements and Model Improvement: Insight into NWP Model Error Using Doppler Lidar and Other WFIP2 Measurement Systems

Abstract Doppler-lidar wind-profile measurements at three sites were used to evaluate NWP model errors from two versions of NOAA’s 3-km-grid HRRR model, to see whether updates in the latest version 4 reduced errors when compared against the original version 1. Nested (750-m grid) versions of each were also tested to see how grid spacing affected forecast skill. The measurements were part of the field phase of the Second Wind Forecasting Improvement Project (WFIP2), an 18-month deployment into central Oregon–Washington, a major wind-energy-producing region. This study focuses on errors in simulating marine intrusions, a summertime, 600–800-m-deep, regional sea-breeze flow found to generate large errors. HRRR errors proved to be complex and site dependent. The most prominent error resulted from a premature drop in modeled marine-intrusion wind speeds after local midnight, when lidar-measured winds of greater than 8 m s −1 persisted through the next morning. These large negative errors were offset at low levels by positive errors due to excessive mixing, complicating the interpretation of model “improvement,” such that the updates to the full-scale versions produced mixed results, sometimes enhancing but sometimes degrading model skill. Nesting consistently improved model performance, with version 1’s nest producing the smallest errors overall. HRRR’s ability to represent the stages of sea-breeze forcing was evaluated using radiation budget, surface-energy balance, and near-surface temperature measurements available during WFIP2. The significant site-to-site differences in model error and the complex nature of these errors mean that field-measurement campaigns having dense arrays of profiling sensors are necessary to properly diagnose and characterize model errors, as part of a systematic approach to NWP model improvement. Significance Statement Dramatic increases in NWP model skill will be required over the coming decades. This paper describes the role of major deployments of accurate profiling sensors in achieving that goal and presents an example from the Second Wind Forecast Improvement Program (WFIP2). Wind-profile data from scanning Doppler lidars were used to evaluate two versions of HRRR, the original and an updated version, and nested versions of each. This study focuses on the ability of updated HRRR versions to improve upon predicting a regional sea-breeze flow, which was found to generate large errors by the original HRRR. Updates to the full-scale HRRR versions produced mixed results, but the finer-mesh versions consistently reduced model errors.

Meteorology & Atmospheric Sciences↗

HydraGNN_Predictive_GFM_2024 - Ensemble of predictive graph foundation models for ground state atomistic materials modeling

We provide the ensemble of fifteen pre-trained graph foundation models (GFMs) for atomistic materials modeling applications. Each one of the fifteen GFMs has been trained on five open-source datasets that (once aggregated) amount to over 154 million atomistic structures, which cover over two-thirds of the natural elements of the periodic table and that comprises a broad set of organic and inorganic compounds. This vast set of atomistic structures comprises ground state configurations that are dynamically stable (i.e., equilibrated structures with atomic forces approximately close to zero values) as well as dynamically unstable structures (i.e., non-equilibrium structures with non-negligible non-zero values of atomic forces). The ensemble of datasets aggregated does NOT include excited states. The datasets have been curated to remove atomistic structures with spectral norm of the force tensor above 100 eV/angstrom. Moreover, a linear term of the energy was computed for each dataset using a linear regression model that uses the chemical concentration of each natural element as regressor. The linear term predicted by the linear regression model has been subtracted from each original energy value to perform a re-alignment of the energy values across different electronic structures approximation theories performed to generate the diverse multi-source, multi-fidelity datasets. The folder "ADIOS_files" contains the set of pre-processed datasets in Adaptable I/O System (ADIOS) format (https://www.exascaleproject.org/research-project/adios/) that have been used for the development and training of GFMs in this work. The "ADIOS_files" directory contains 6 sub-directories named as follows: - ANI1x-v3.bp - MPTrj-v3.bp - OC2020-20M-v3.bp - OC2020-v3.bp - OC2022-v3.bp - qm7x-v3.bp Each sub-directory contains the pre-processed datasets converted in Adaptable I/O System (ADIOS) format (https://www.exascaleproject.org/research-project/adios/) that have been used to the development, training, and performance testing of the ensemble go predictive graph foundation models. Each GFM was developed using HydraGNN (https://github.com/ORNL/HydraGNN) as underlying graph neural network (GNN) architecture. The multi-task learning (MTL) capability of HydraGNN was used to simultaneously train the GFMs on labeled values for direct predictions of energy (a total system property of an atomistic structure that measures the chemical stability) and atomic forces (an atomic level property of an atomistic structure that measures the dynamical stability). The hyper parameters of the GFM have been tuned using scalable hyperparameter optimization (HPO) algorithms implemented in the software DeepHyper (https://github.com/deephyper/deephyper). The pre-training of each HPO trial was performed using distributed data parallelism (DDP) to scale the training across 128 compute nodes of the exascale OLCF supercomputer Frontier. Each HPO trial was trained only for 10 epochs and an early stopping was performed to avoid wasting significant computational resources on GNN architectures that were clearly underperforming. For each HPO trial, the 'omnistat' tool developed by (AMD Research - Advanced Micro Device) was used to measure the total energy consumption in kWh. The ensemble of GFMs was obtained by selecting the fifteen best performing HPO trials. Four models have been selected for their clear advantage in accuracy, and these are the GFMs with IDs 229, 156, 147, 260. Additional eleven models have been selected based on judicious balance between accuracy and energy consumption needed for training, and these are the GFMs with IDs 165, 78, 137, 1, 175, 171, 181, 67, 179, 167, 351. Each selected GFM of the ensemble was continued to cumulate a total of at most 30 epochs. In some cases, the total number of epochs actually performed was les than 30 due to two combined factors: (1) the size of the GFM (i.e., the number of model parameters to train) and (2) the total wall-clock time for which the computational resources could be allocated on OLCF-Frontier. The "Ensemble_of_models" directory contains 15 sub-directories named as follows: - gfm_0.229 - gfm_0.156 - gfm_0.147 - gfm_0.260 - gfm_0.165 - gfm_0.78 - gfm_0.137 - gfm_0.1 - gfm_0.175 - gfm_0.171 - gfm_0.181 - gfm_0.67 - gfm_0.179 - gfm_0.167 - gfm_0.351 Each one of these sub-directories refers to one of the fifteen HPO trials that have been selected to continue the pre-training with at most 30 epochs. With each sub-directory associated with a specific HPO trial, the following files can be found: - config.json: file for argument parsing to develop and train an HydraGNN architecture - gfm_0.ID_epoch_N.pk: file with model parameters for HPO ID trial after N epochs of training The ensemble of fifteen GFM architectures was used for (1) ensemble averaging to stabilize the predictions of energy and atomic forces after pre-training for post-processing analysis and (2) ensemble uncertainty quantification (UQ). The code used to develop, pre-train, and load the pre-trained models for post-processing analysis is available on the ORNL-GitHub at the following link: https://github.com/ORNL/HydraGNN/tree/Predictive_GFM_2024

36 MATERIALS SCIENCE↗

Surrogate modeling of Cellular-Potts agent-based models as a segmentation task using the U-Net neural network architecture

The Cellular-Potts model is a powerful and ubiquitous framework for developing computational models for simulating complex multicellular biological systems. Cellular-Potts models (CPMs) are often computationally expensive due to the explicit modeling of interactions among large numbers of individual model agents and diffusive fields described by partial differential equations (PDEs). In this work, we develop a convolutional neural network (CNN) surrogate model using a U-Net architecture that accounts for periodic boundary conditions. We use this model to accelerate the evaluation of a mechanistic CPM previously used to investigate in vitro vasculogenesis. The surrogate model was trained to predict 100 computational steps ahead (Monte-Carlo steps, MCS), accelerating simulation evaluations by a factor of 562 times compared to single-core CPM code execution on CPU. Over short timescales of up to 3 recursive evaluations, or 300 MCS, our model captures the emergent behaviors demonstrated by the original Cellular-Potts model such as vessel sprouting, extension and anastomosis, and contraction of vascular lacunae. This approach demonstrates the potential for deep learning to serve as a step toward efficient surrogate models for CPM simulations, enabling faster evaluation of computationally expensive CPM simulations of biological processes.

97 MATHEMATICS AND COMPUTING↗

Model Package Report: Central Plateau Vadose Zone Models

This model package report describes concisely the modeling objectives, conceptualization, implementation, uncertainty and sensitivity, configuration control, limitations, data needs, and recommendations for improvement of the Central Plateau Vadose Zone Models. This collection of models is developed to meet the vadose zone simulation needs of the Hanford Site Composite Analysis (CA), the Hanford Site Cumulative Impact Evaluation (CIE), and are expected to find other applications in Hanford Site remedial cleanup decision-making processes. This model package report describes and documents the development of the models themselves to fulfill technical approaches defined for the CA and the CIE. This report does not document any specific calculation using these models: instead, applications of individual vadose models to perform specific calculations will be documented in environmental calculation files, including inputs and results, as appropriate. Configuration management for the Central Plateau Vadose Zone Models is managed through assignment of unique sequential numerical version numbers and archival of the models in the Environmental Modeling Management Archive.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Implementation of a Drift-Flux Model in SAM for Modeling of Passively Transported GAS in Molten Salt Reactors

The Nuclear Energy Advanced Modeling and Simulation (NEAMS) program is further developing the Multiphysics Object Oriented Simulation Environment (MOOSE) system thermal hydraulics (T/H) code, System Analysis Module (SAM), to include modeling of molten salt reactor (MSR) designs. MSR designs in which the fuel is dissolved in the salt coolant poses unique modeling and simulation (M&S) challenges because fission products—some of which will be noncondensable gasses—travel with the coolant, thus allowing for deposition and interaction throughout the entire system flow loop. This behavior must be modeled to successfully understand MSR system behavior during normal and off-normal operation events. In past work, SAM has been extended to include a passive species transport capability for modeling of MSR fission products that travel with the salt coolant. This work extends the model to include a drift-flux model to capture the tendency of the gas phase to move at a different velocity than the bulk liquid. Additional constitutive models have also been added for calculation of gas volume fraction, bubble radius, and interfacial area, which will be important for calculation of species phase migration in future coupling activities. Testing has been performed to ensure that the new model agrees with expected values for several simple models, but additional future work will be required to test the model for more complex geometries that will be needed for full-scale MSR simulations.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗