Search NASA⌕ Search

SEARCH · Search NASA

Results for “Root Characteristics”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 271 records · Page 15
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

Advances in high-throughput technologies have enhanced our ability to describe microbial communities as they relate to human health and disease. Alongside the growth in sequencing data has come an influx of resources that synthesize knowledge surrounding microbial traits, functions, and metabolic potential with knowledge of how they may impact host pathways to influence disease phenotypes. These knowledge bases can enable the development of mechanistic explanations that may underlie correlations detected between microbial communities and disease. In this review, we survey existing resources and methodologies for the computational integration of broad classes of microbial and host knowledge. We evaluate these knowledge bases in their access methods, content, and source characteristics. We discuss challenges of the creation and utilization of knowledge bases including inconsistency of nomenclature assignment of taxa and metabolites across sources, whether the biological entities represented are rooted in ontologies or taxonomies, and how the structure and accessibility limit the diversity of applications and user types. We make this information available in a code and data repository at: https://github.com/lozuponelab/knowledge-source-mappings. Addressing these challenges will allow for the development of more effective tools for drawing from abundant knowledge to find new insights into microbial mechanisms in disease by fostering a systematic and unbiased exploration of existing information.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1987

Some numerical calculations by using linear classical sonic theories approached from sub- or supersonic speeds

The unsteady aerodynamics of a two-dimensional wing at sonic speed are studied by using so-called classical sonic theories (linear), approached from supersonic flow (M=1+0) or subsonic flow (M=1-0). In the former approach, the exact expressions of lift and lift distribution are obtained in terms of Fresnel integrals, while in the latter approach an integral equation must be solved, the kernel function of which is obtained from the subsonic Possio's equation and has a root singularity. The discrete analysis is adopted on the basis of the semicircle method (SCM) and the weighting function for subsonic-flow-Gauss-quadrature, as well as modified characteristics obtained from both approaches agree quite well with each other. The results obtained by the present computations are compared with those of DLM-C (subsonic 2D code) developed by ANDO et al, and are found to give a reasonable outer boundary for subsonic unsteady aerodynamics.

Yamamoto, Y.↗
NASA NTRS2019

Estimation of coarse dead wood stocks in intact and degraded forests in the Brazilian Amazon using airborne lidar

Coarse dead wood is an important component of forest carbon stocks, but it is rarely measured in Amazon forests and is typically excluded from regional forest carbon budgets. Our study is based on line intercept sampling for fallen coarse dead wood conducted along 103 transects with a total length of 48 km matched with forest inventory plots where standing coarse dead wood was measured in the footprints of larger areas of airborne lidar acquisitions. We developed models to relate lidar metrics and Landsat time series variables to coarse dead wood stocks for intact, logged, burned, or logged and burned forests. Canopy characteristics such as gap area produced significant individual relations for logged forests. For total fallen plus standing coarse dead wood (hereafter defined as total coarse dead wood), the relative root mean square error for models with only lidar metrics ranged from 33 % in logged forest to up to 36 % in burned forests. The addition of historical information improved model performance slightly for intact forests (31 % against 35 % relative root mean square error), not justifying the use of a number of disturbance events from historical satellite images (Landsat) with airborne lidar data. Lidar-derived estimates of total coarse dead wood compared favorably with independent ground-based sampling for areas up to several hundred hectares. The relations found between total coarse dead wood and variables quantifying forest structure derived from airborne lidar highlight the opportunity to quantify this important but rarely measured component of forest carbon over large areas in tropical forests.

Brazilian Amazon↗
DOE OSTI2025

Causal relationships of vegetation productivity with root zone water availability and atmospheric dryness at the catchment scale

Abstract. This study explores the causal relationships between catchment water availability, vapor pressure deficit, and gross primary productivity (GPP) across 341 catchments in the contiguous US. Seasonal climatic, hydrological, and vegetation characteristics were represented using the Horton index, ecological aridity index, evaporative fraction index, and carbon uptake efficiency. Statistical methods, including circularity statistics, correlation analysis, and causality tests, were employed to determine the complex interactions between catchment wetness, atmospheric dryness, and vegetation carbon uptake. The results revealed a maximum lag of 2 months in the intra-annual variability of catchment water supply–productivity and atmospheric water demand–productivity relationships, with hysteresis patterns varying with the catchment's hydrological characteristics. In catchments not permanently under water-limited or energy-limited conditions, vegetation experiences hydrological stress during the peak growing period, coinciding with the highest gross primary productivity and carbon uptake efficiency being out of phase with the Horton index and in phase with the evaporative fraction index. Causality analysis highlights strong temporal continuity in GPP seasonal characteristics, with a cause–effect relationship between catchment water supply, atmospheric demand, and vegetation productivity spanning a maximum of 2 months. These findings underscore the need for a comprehensive functional framework that integrates catchment water supply, atmospheric demand, and vegetation productivity to enhance our understanding and predictive capabilities with regard to ecosystem responses to climate change.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Spatial mapping of plant N-glycosylation cellular heterogeneity inside soybean root nodules provided insights into legume-rhizobia symbiosis

Although ubiquitously present, information on the function of complex N-glycan posttranslational modification in plants is very limited and it is often neglected. In this work, we adopted an enzyme-assisted matrix-assisted laser desorption/ionization mass spectrometry imaging strategy to visualize the distribution and identity of N-glycans in soybean root nodules at a cellular resolution. We additionally performed proteomics analysis to probe the potential correlation to proteome changes during symbiotic rhizobia-legume interactions. Our ion images reveal that intense N-glycosylation occurs in the sclerenchyma layer, and inside the infected cells within the infection zone, while morphological structures such as the cortex, uninfected cells, and cells that form the attachment with the root are less N-glycosylated. Notably, we observed different N-glycan profiles between soybean root nodules infected with wild type rhizobia and those infected with mutant rhizobia incapable of efficiently fixing atmospheric nitrogen. The majority of complex N-glycan structures, particularly those with characteristic Lewis-a epitopes, are overexpressed in the mutant nodules. Our proteomic results revealed that these glycans likely originated from proteins that maintain the redox balance crucial for proper nitrogen fixation, but also from enzymes involved in N-glycan and phenylpropanoid biosynthesis. These findings indicate possible involvement of Lewis-a glycans in these critical pathways during legume-rhizobia symbiosis.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Detecting Arsenic Contamination Using Satellite Imagery and Machine Learning

Arsenic, a potent carcinogen and neurotoxin, affects over 200 million people globally. Current detection methods are laborious, expensive, and unscalable, being difficult to implement in developing regions and during crises such as COVID-19. This study attempts to determine if a relationship exists between soil’s hyperspectral data and arsenic concentration using NASA’s Hyperion satellite. It is the first arsenic study to use satellite-based hyperspectral data and apply a classification approach. Four regression machine learning models are tested to determine this correlation in soil with bare land cover. Raw data are converted to reflectance, problematic atmospheric influences are removed, characteristic wavelengths are selected, and four noise reduction algorithms are tested. The combination of data augmentation, Genetic Algorithm, Second Derivative Transformation, and Random Forest regression (R 2 =0.840 and normalized root mean squared error (re-scaled to [0,1]) = 0.122) shows strong correlation, performing better than past models despite using noisier satellite data (versus lab-processed samples). Three binary classification machine learning models are then applied to identify high-risk shrub-covered regions in ten U.S. states, achieving strong accuracy (=0.693) and F1-score (=0.728). Overall, these results suggest that such a methodology is practical and can provide a sustainable alternative to arsenic contamination detection.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗
NASA NTRS1976

An analytical study and wind tunnel tests of an aeromechanical gust-alleviation system for a light airplane

The results of an analytical study of a system using stability derivatives determined in static wind tunnel tests of a 1/6 scale model of a popular, high wing, light airplane equipped with the gust alleviation system are reported. The longitudinal short period mode dynamics of the system are analyzed, and include the following: (1) root loci, (2) airplane frequency responses to vertical gusts, (3) power spectra of the airplane responses in a gust spectrum, (4) time history responses to vertical gusts, and (5) handling characteristics. The system reduces the airplane's normal acceleration response to vertical gusts while simultaneously increasing the pitching response and reducing the damping of the longitudinal short period mode. The normal acceleration response can be minimized by using the proper amount of static alleviation and a fast response system with a moderate amount of damping. The addition of a flap elevator interconnect or a pitch damper system further increases the alleviation while moderating the simultaneous increase in pitching response. The system provides direct lift control and may reduce the stick fixed longitudinal static stability.

Stewart, E. C.↗
NASA NTRS1984

An investigation into the probabilistic combination of quasi-static and random accelerations

The development of design load factors for aerospace and aircraft components and experiment support structures, which are subject to a simultaneous vehicle dynamic vibration (quasi-static) and acoustically generated random vibration, require the selection of a combination methodology. Typically, the procedure is to define the quasi-static and the random generated response separately, and arithmetically add or root sum square to get combined accelerations. Since the combination of a probabilistic and a deterministic function yield a probabilistic function, a viable alternate approach would be to determine the characteristics of the combined acceleration probability density function and select an appropriate percentile level for the combined acceleration. The following paper develops this mechanism and provides graphical data to select combined accelerations for most popular percentile levels.

Schock, R. W.↗
NASA NTRS1975

Calculation of static longitudinal aerodynamic characteristics of STOL aircraft with upper surface blown flaps

An existing prediction method developed for EBF aircraft configurations was applied to USB configurations to determine its potential utility in predicting USB aerodynamic characteristics. An existing wing-flap vortex-lattice computer program was modified to handle multiple spanwise flap segments at different flap angles. A potential flow turbofan wake model developed for circular cross-section jets was used to model a rectangular cross-section jet wake by placing a number of circular jets side by side. The calculation procedure was evaluated by comparison of measured and predicted aerodynamic characteristics on a variety of USB configurations. The method is limited to the case where the flow and geometry of the configuration are symmetric about a vertical plane containing the wing root chord. Comparison of predicted and measured lift and pitching moment coefficients were made on swept wings with one and two engines per wing panel, various flap deflection angles, and a range of thrust coefficients. The results indicate satisfactory prediction of lift for flap deflections up to 55 and thrust coefficients less than 2. The applicability of the prediction procedure to USB configurations is evaluated, and specific recommendations for improvements are discussed.

Mendenhall, M. R.↗
NASA NTRS1976

Triangular covariance factorizations for

An improved computational form of the discrete Kalman filter is derived using an upper triangular factorization of the error covariance matrix. The covariance P is factored such that P = UDUT where U is unit upper triangular and D is diagonal. Recursions are developed for propagating the U-D covariance factors together with the corresponding state estimate. The resulting algorithm, referred to as the U-D filter, combines the superior numerical precision of square root filtering techniques with an efficiency comparable to that of Kalman's original formula. Moreover, this method is easily implemented and involves no more computer storage than the Kalman algorithm. These characteristics make the U-D method an attractive realtime filtering technique. A new covariance error analysis technique is obtained from an extension of the U-D filter equations. This evaluation method is flexible and efficient and may provide significantly improved numerical results. Cost comparisons show that for a large class of problems the U-D evaluation algorithm is noticeably less expensive than conventional error analysis methods.

Thornton, C. L.↗
NASA NTRS1988

Response of wind shear warning systems to turbulence with implication of nuisance alerts

The objective was to predict the inherent turbulence response characteristics of candidate wind shear warning system concepts and to assess the potential for nuisance alerts. Information on the detection system and associated signal processing, physical and mathematical models, wind shear factor root mean square turbulence response and the standard deviation of the wind shear factor due to turbulence is given in vugraph form.

Bowles, Roland L.↗
NASA NTRS1940

A theoretical study of lateral stability with an automatic pilot

The influence of automatic operation of the aileron and rudder controls on the lateral stability of an airplane is discussed. The control deflections are assumed to be proportional to the deviations and to the rates of deviation of the airplane from steady-flight conditions. The effects of changes in the types of deviation governing control application are considered. For one simple method of control in which the aileron deflection is proportional to the angle of bank and the rudder deflection is proportional to the angle of yaw, the effect of lag in control application is studied and regions of stability with and without lag are given. For the simple control with lag, curves are included that show the variations in the roots of the stability equation with changes in the amount of control applied. It is concluded that, although the simple control provides a satisfactory means of varying most of the lateral stability characteristics, the stability in azimuth will always be poor for such a control.

Imlay, Frederick H↗
NASA NTRS2023

Probabilistic Hydrological Estimation of LandSlides (PHELS): Global Ensemble Landslide Hazard Modelling

In this study we present a model for the global Probabilistic Hydrological Estimation of LandSlides (PHELS). PHELS estimates the daily hazard of hydrologically triggered landslides at a coarse spatial resolution of 36 km, by combining landslide susceptibility (LSS) and (percentiles of) hydrological variable(s). The latter include daily rainfall, a 7-day antecedent rainfall index (ARI7) or root-zone soil moisture content (rzmc) as hydrological predictor variables, or the combination of rainfall and rzmc. The hazard estimates with any of these predictor variables have areas under the receiver operating characteristic curve (AUC) above 0.68. The best performance was found with combined rainfall and rzmc predictors (AUC = 0.79), which resulted in the lowest number of missed alarms (especially during spring) and false alarms. Furthermore, PHELS provides hazard uncertainty estimates by generating ensemble simulations based on repeated sampling of LSS and the hydrological predictor variables. The estimated hazard uncertainty follows the behaviour of the input variable uncertainties, is about 13.6 % of the estimated hazard value on average across the globe and in time and is smallest for very low and very high hazard values.

Anne Felsberg↗
NASA NTRS1990

Macromolecular differentiation of Golgi stacks in root tips of Arabidopsis and Nicotiana seedlings as visualized in high pressure frozen and freeze-substituted samples

The plant root tip represents a fascinating model system for studying changes in Golgi stack architecture associated with the developmental progression of meristematic cells to gravity sensing columella cells, and finally to "young" and "old", polysaccharide-slime secreting peripheral cells. To this end we have used high pressure freezing in conjunction with freeze-substitution techniques to follow developmental changes in the macromolecular organization of Golgi stacks in root tips of Arabidopsis and Nicotiana. Due to the much improved structural preservation of all cells under investigation, our electron micrographs reveal both several novel structural features common to all Golgi stacks, as well as characteristic differences in morphology between Golgi stacks of different cell types. Common to all Golgi stacks are clear and discrete differences in staining patterns and width of cis, medial and trans cisternae. Cis cisternae have the widest lumina (approximately 30 nm) and are the least stained. Medial cisternae are narrower (approximately 20 nm) and filled with more darkly staining products. Most trans cisternae possess a completely collapsed lumen in their central domain, giving rise to a 4-6 nm wide dark line in cross-sectional views. Numerous vesicles associated with the cisternal margins carry a non-clathrin type of coat. A trans Golgi network with clathrin coated vesicles is associated with all Golgi stacks except those of old peripheral cells. It is easily distinguished from trans cisternae by its blebbing morphology and staining pattern. The zone of ribosome exclusion includes both the Golgi stack and the trans Golgi network. Intercisternal elements are located exclusively between trans cisternae of columella and peripheral cells, but not meristematic cells. In older peripheral cells only trans cisternae exhibit slime-related staining. Golgi stacks possessing intercisternal elements also contain parallel rows of freeze-fracture particles in their trans cisternal membranes. We propose that intercisternal elements serve as anchors of enzyme complexes involved in the synthesis of polysaccharide slime molecules to prevent the complexes from being dragged into the forming secretory vesicles by the very large slime molecules. In addition, we draw attention to the similarities in composition and apparent site of synthesis of xyloglucans and slime molecules.

NASA Program Space Biology↗
DOE OSTI2020

An acidic polysaccharide (AGC3) isolated from North American ginseng ( Panax quinquefolius ) suspension culture as a potential immunomodulatory nutraceutical

Polysaccharides isolated from Panax quinquefolius roots are widely used as nutraceuticals due to their immunomodulatory properties. Despite their popularity, several challenges exist in isolating ginseng root polysaccharides such as batch-to-batch structural inconsistencies and bacterial endotoxin contamination. A plant tissue culture-based platform offers a potential solution to isolate natural polysaccharide fractions with consistent chemical characteristics and reduced endotoxin content. In this study, an acidic polysaccharide fraction (AGC3) with immunomodulatory properties was isolated from Panax quinquefolius suspension cultures. The heterogeneous fraction (molecular weight: 4.81 and 32.14 kDa), purified by anion exchange chromatography, was predominantly composed of galactose (>60%) along with the presence of rhamnose, arabinose, glucose, glucuronic acid and galacturonic acid. The major glycosidic linkages were found to be t-Galp (47.7%), 4-Galp (15.6%), 2,4-Rhap (8.1%), 6-Galp (8.1%) and 4-GalAp (6.8%). Structural analyses indicated the presence of a pectic rhamnogalacturonan I polysaccharide in AGC3. AGC3 significantly (p < 0.05) stimulated RAW 264.7 murine macrophage cells and primary murine splenocytes by enhancing the production of several immunomodulatory mediators such as IL-6, TNF-α, GM-CSF and MCP-1. The results also indicated the putative roles of NF-κB (p65/RelA) and MAPK (p38) signaling pathways in the immunostimulatory response. Additionally, AGC3 induced murine splenocyte proliferation, another major indicator of immunostimulation. Overall, AGC3 has the potential to be used as an immunostimulatory nutraceutical.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Organic carbon feedbacks to soil structure in Profundihumic and Haplic Ferralsols in Campinas, Sao Paulo, Brazil

Increasing soil organic matter content coincides with increasing soil porosity and decreasing bulk density, but the mechanisms that lead to changes in soil structure are unclear. We quantified and compared soil characteristics across two contrasting soils (heavily weathered ferralsols in Brazil) to clarify the effects of organic matter content on soil porosity. We found that high organic matter content fosters higher biologic activity, including root growth and animal burrowing, which in turn increase soil porosity and decreases bulk density.This dataset includes soil physical, morophological, and chemical variables from 6 soil profiles were sampled in Campinas, Sa ̃o Paulo state, southeastern Brazil to 1 m depth. Sites are regenerated mixed savanna and rainforest in the protected area of Viracopos Airport in Campinas, lightly grazed by cattle.This dataset includes soil color, bulk density, texture (percent sand, silt, clay, and coarse fragments as well as class), soil pH, cation exchange capacity, C stock, C concentration, N stock, N concentration, delta 13C, Delta 14C, and soil porosity in Excel and csv format.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Impact of a track trigger at a multi-TeV muon collider

In the panorama of future particle accelerators, the Muon Collider seems to be the best choice for several reasons that will be explored in section 1.2. The main challenge is represented by the instability of the muons. At the desired instantaneous luminosities, an intense flow of secondary and tertiary particles from the interactions of the beam decay products with the machine elements reaches the detector, compromising its performance. Several studies are currently underway to mitigate the background and to have an efficient trigger. My work represents a first step towards understanding the basic characteristics of a trigger selection, which will subsequently guide the design of the trigger system. With this aim I produced and analyzed Higgs and di-Higgs signals with MadGraph and CERN-ROOT. In first section there is an introduction to Muon Collider, a brief history, a discussion of its benefits, a description of the detector and of the effects of the Beam Induced Background. Several operating center-of-mass energies are possible for this machine, in this report a center-of-mass of 3 TeV is assumed. Then I describe the event generation process. Finally I describe the entire analysis, in particular I analyzed the efficiency and the number of events for each process.

43 PARTICLE ACCELERATORS↗
DOE OSTI2021

NGEE Arctic Plant Traits: Fine Roots, Kougarok Road Mile Marker 64, Seward Peninsula, Alaska, 2016

Soil cores were collected from twelve vegetation biomass plots at the Kougarok hillslope in late July of 2016. The sampled plots were located across six ecotypes present at this site (n=2 replicates per ecotype). Soil cores were separated into depth intervals in the field and frozen for transport to Oak Ridge National Laboratory. Data package contains one *.csv and one *.pdf.Laboratory sample processing of these soils generated depth-specific data on soil properties as well as fine root biomass, length, %C, %N, delta13C, and delta15N. Only live fine roots were analyzed. Fine roots were not separated by species or plant functional type.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy’s Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy’s Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗