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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 271 records · Page 15
All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

Viral phylogenomics using an alignment-free method: A three-step approach to determine optimal length of k-mer

The development of rapid, economical genome sequencing has shed new light on the classification of viruses. As of October 2016, the National Center for Biotechnology Information (NCBI) database contained >2 million viral genome sequences and a reference set of ~4000 viral genome sequences that cover a wide range of known viral families. Whole-genome sequences can be used to improve viral classification and provide insight into the viral tree of life . However, due to the lack of evolutionary conservation amongst diverse viruses, it is not feasible to build a viral tree of life using traditional phylogenetic methods based on conserved proteins. In this study, we used an alignment-free method that uses k-mers as genomic features for a large-scale comparison of complete viral genomes available in RefSeq. To determine the optimal feature length, k (an essential step in constructing a meaningful dendrogram), we designed a comprehensive strategy that combines three approaches: (1) cumulative relative entropy, (2) average number of common features among genomes, and (3) the Shannon diversity index. This strategy was used to determine k for all 3,905 complete viral genomes in RefSeq. Lastly, the resulting dendrogram shows consistency with the viral taxonomy of the ICTV and the Baltimore classification of viruses.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

Global transpiration data from sap flow measurements: the SAPFLUXNET database

Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN.

58 GEOSCIENCES↗
NASA NTRS1984

Use of multi-frequency, multi-polarization, multi-angle airborne radars for class discrimination in a southern temperature forest

The utility of radar scatterometers for discrimination and characterization of natural vegetation was investigated. Backscatter measurements were acquired with airborne multi-frequency, multi-polarization, multi-angle radar scatterometers over a test site in a southern temperate forest. Separability between ground cover classes was studied using a two-class separability measure. Very good separability is achieved between most classes. Longer wavelength is useful in separating trees from non-tree classes, while shorter wavelength and cross polarization are helpful for discrimination among tree classes. Using the maximum likelihood classifier, 50% overall classification accuracy is achieved using a single, short-wavelength scatterometer channel. Addition of multiple incidence angles and another radar band improves classification accuracy by 20% and 50%, respectively, over the single channel accuracy. Incorporation of a third radar band seems redundant for vegetation classification. Vertical transmit polarization is critically important for all classes.

Mehta, N. C.↗
DOE OSTI2020

Recent land cover changes in the Southwestern US lead to an increase in surface temperature

The increase in large-scale land cover change (LCC) in recent decades, particularly in response to climate-driven disturbances, has potential to impact local and regional changes in climate due to modification of carbon sources and sinks, albedo, surface roughness and energy fluxes. Using observational data, we predict the impact of two of the most extensive LCCs occurring in the Southwestern US: drought-induced tree mortality and shrub encroachment into grasslands, on surface temperature. We developed a new energy balance method that extracts the biophysical responses to environmental conditions, to predict how structural changes in albedo, surface roughness and canopy conductance following LCC will alter surface temperature. This method allows us not only to explain the observed differences in surface temperature between two non-adjacent study sites with different environmental conditions, but also to separate the contribution of biophysical and non-biophysical properties to surface temperature. Our results suggest that changes in biophysical properties due to shrub encroachment and tree mortality in the Southwestern US (independent of changes in other environmental properties) can potentially lead to an increase in midday surface temperature (11AM to 2PM) of 1 to 2 degrees Celsius, comparable to changes in surface temperature following deforestation. Although the average surface temperature increase in response to both shrub encroachment and tree mortality is similar, the biophysical properties driving the temperature change are different in each scenario. Change in aerodynamic conductance following tree mortality is the largest contributor to heating, while reduced albedo and canopy conductance drive the increase in surface temperature following shrub encroachment. Finally, we also show how this increase in daytime surface temperature could be further intensified with future climate, especially with the expected reduction in soil water availability in the Southwest.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1998

Incorporating Endmember Variability into Spectral Mixture Analysis Through Endmember Bundles

Variation in canopy structure and biochemistry induces a concomitant variation in the top-of-canopy spectral reflectance of a vegetation type. Hence, the use of a single endmember spectrum to track the fractional abundance of a given vegetation cover in a hyperspectral image may result in fractions with considerable error. One solution to the problem of endmember variability is to increase the number of endmembers used in a spectral mixture analysis of the image. For example, there could be several tree endmembers in the analysis because of differences in leaf area index (LAI) and multiple scatterings between leaves and stems. However, it is often difficult in terms of computer or human interaction time to select more than six or seven endmembers and any non-removable noise, as well as the number of uncorrelated bands in the image, limits the number of endmembers that can be discriminated. Moreover, as endmembers proliferate, their interpretation becomes increasingly difficult and often applications simply need the aerial fractions of a few land cover components which comprise most of the scene. In order to incorporate endmember variability into spectral mixture analysis, we propose representing a landscape component type not with one endmember spectrum but with a set or bundle of spectra, each of which is feasible as the spectrum of an instance of the component (e.g., in the case of a tree component, each spectrum could reasonably be the spectral reflectance of a tree canopy). These endmember bundles can be used with nonlinear optimization algorithms to find upper and lower bounds on endmember fractions. This approach to endmember variability naturally evolved from previous work in deriving endmembers from the data itself by fitting a triangle, tetrahedron or, more generally, a simplex to the data cloud reduced in dimension by a principal component analysis. Conceptually, endmember variability could make it difficult to find a simplex that both surrounds the data cloud and has vertices that are realistic endmember spectra with reflectances between 0 and 1. In this paper, we create endmember bundles and bounding fraction images for an AVIRIS subscene simulated with a plant canopy radiative transfer model. The simulated subscene is spatially patterned after a subscene from the AVIRIS image acquired August, 1993 over La Copita, Texas. In addition, for comparison, we performed a traditional unmixing with image endmembers.

Bateson, C. Ann↗
NASA NTRS2006

The Relationship of Forest Fires Detected by MODIS and SRTM Derived Topographic Features in Central Siberia

Fires are a common occurrence in the Siberian boreal forest. The MOD14 Thermal anomalies product of the Terra MODIS Moderate Resolution Spectroradiometer) product set is designed to detect thermal anomalies (i.e. hotspots or fires) on the Earth's surface. Recent field studies showed a dependence of fire occurrence on topography. In this study MODIS thermal anomaly data and SRTM topography data were merged and analyzed to evaluate if forest fires are more likely to occur at certain combinations of elevation, slope and aspect. Using the satellite data over a large area can lead to better understanding how topography and forest fires are related. The study area covers a 2.5 Million krn(exp 2) portion of the Central Siberian southern taiga from 72 deg to 110 deg East and from 50 deg to 60 deg North. About 57% of the study area is forested and 80% of the forest grows between 200 and 1000 m. Forests with pine (Pinus sylvestris), larch (Larix sibirica, L. gmelinii), Siberian pine (Pinus sibirica), spruce (Picea obovata.) and fir (Abies sibirica) cover most of the landscape. Deciduous stands with birch (Betula pendula, B. pubescens) and aspen (Populus tremula) cover the areas of lower elevation in this region. The climate of this area is distinctly continental with long, cold winters and short hot summers. The tree line in this part of the world is around 1500 m in elevation with alpine tundra, snow and ice fields and rock outcrops extending up to over 3800 m. A 500 m resolution landcover map was developed using 2001 MODIS MOD13 Normalized Vegetation Index (NDVI) and Middle Infrared (MIR) products for seven 16-day periods. The classification accuracy was over 87%. The SRTM version 2 data, which is distributed in 1 degree by 1 degree tiles were mosaiced using the ENVI software. In this study, only those MODIS pixels were used that were flagged as "nominal or high confidence fire" by the MODIS fire product team. Using MODIS data from the years 2000 to 2005 along with the improved Shuttle Radar Topographic Mission (SRTM) version 2 data at 100 m resolution, the distribution of hot spots was examined by elevation, slope and aspect as well as by forest type. The results show that more forest area burns at lower elevations but a larger percentage of the available forest area burns at higher elevations. This is probably because steep slopes occur at higher elevations. Fires are only more common on slopes with a southern exposure if the slope is steeper than 15 degrees. The next step in this study will be to monitor areas where the risk of fire is high (steep slopes with a southern exposure) and to refine this method by incorporating anthropogenic features for more accurate fire disturbance monitoring.

Ranson, Jon K.↗
NASA NTRS2007

Journal of Air Transportation, Volume 12, No. 2 (ATRS Special Edition)

Topics covered include: Competition and Change in the Long-Haul Markets from Europe; Insights into the Maintenance, Repair, and Overhaul Configurations of European Airlines; Validation of Fault Tree Analysis in Aviation Safety Management; An Investigation into Airline Service Quality Performance between U.S. Legacy Carriers and Their EU Competitors and Partners; and Climate Impact of Aircraft Technology and Design Changes.

Bowen, Brent D.↗
NASA NTRS1997

(abstract) Studies of Interferometric Penetration into Vegetation Canopies using Multifrequency Interferometry Data at JPL

Radar interferometric observations both from spaceborne and airborne platforms have been used to generate accurate topographic maps, measure milimeter level displacements from earthquakes and volcanoes, and for making land cover classification and land cover change maps. Interferometric observations have two basic measurements, interferometric phase, which depends upon the path difference between the two antennas and the correlation. One of the key questions concerning interferometric observations of vegetated regions is where in the canopy does the interferometric phase measure the height. Results for two methods of extracting tree heights and other vegetation parameters based upon the amount of volumetric decorrelation will be presented.

radar interferometry vegetation land cover↗
DOE OSTI2024

The plant cell wall—dynamic, strong, and adaptable—is a natural shapeshifter

Mythology is replete with good and evil shapeshifters, who, by definition, display great adaptability and assume many different forms—with several even turning themselves into trees. Cell walls certainly fit this definition as they can undergo subtle or dramatic changes in structure, assume many shapes, and perform many functions. In this review, we cover the evolution of knowledge of the structures, biosynthesis, and functions of the 5 major cell wall polymer types that range from deceptively simple to fiendishly complex. Along the way, we recognize some of the colorful historical figures who shaped cell wall research over the past 100 years. The shapeshifter analogy emerges more clearly as we examine the evolving proposals for how cell walls are constructed to allow growth while remaining strong, the complex signaling involved in maintaining cell wall integrity and defense against disease, and the ways cell walls adapt as they progress from birth, through growth to maturation, and in the end, often function long after cell death. We predict the next century of progress will include deciphering cell type–specific wall polymers; regulation at all levels of polymer production, crosslinks, and architecture; and how walls respond to developmental and environmental signals to drive plant success in diverse environments.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1984

Effects of nontropical forest cover on climate

The albedo of a forest with snow on the ground is much less than that of snow-covered low vegetation such as tundra. As a result, simulation of the Northern Hemisphere climate, when fully forested south of a suitably chosen taiga/tundra boundary (ecocline), produces a hemispheric surface air temperature 1.9 K higher than that of an earth devoid of trees. Using variations of the solar constant to force climate changes in the GLAS Multi-Layer Energy Balance Model, the role of snow-albedo feedback in increasing the climate sensitivity to external perturbations is reexamined. The effect of snow-albedo feedback is found to be significantly reduced when a low albedo is used for snow over taiga, south of the fixed latitude of the ecocline. If the ecocline shifts to maintain equilibrium with the new climate - which is presumed to occur in a prolonged perturbation when time is sufficient for trees to grow or die and fall - the feedback is stronger than for a fixed ecocline, especially at high latitudes. However, this snow/vegetation-albedo feedback is still essentially weaker than the snow-albedo feedback in the forest-free case. The loss of forest to agriculture and other land-use would put the present climate further away from that associated with the fully forested earth south of the ecocline and closer to the forest-free case. Thus, the decrease in nontropical forest cover since prehistoric times has probably affected the climate by reducing the temperatures and by increasing the sensitivity to perturbations, with both effects more pronounced at high latitudes.

Otterman, J.↗
NASA NTRS1984

Analysis of synthetic aperture radar data acquired over a variety of land cover

The results of Synthetic Aperture Radar (SAR) measurements over Kershaw County, South Carolina, using HH, HV, and VV polarization and two-incidence angle X-band airborne SAR system and over Baldwin County, Alabama, using HH polarization L-band Shuttle Imaging Radar (SIR-A) are presented. The X-band data indicate higher HH than VV radar return for cypress forest with standing water. Multipolarization (HH, HV, and VV) data help delineate several land-cover types that are difficult to delineate by the single polarization (HH) data. The L-band data indicate that radar return signal strength is highly correlated with tree height or age for three types of pine forest. It is found that delineation of urban/residential from deciduous forest is significantly improved by the inclusion of Landsat multispectral scanner data.

Wu, S.-T.↗
NASA NTRS1994

ACTS mobile propagation campaign

Preliminary results are presented for three propagation measurement campaigns involving a mobile receiving laboratory and 20 GHz transmissions from the Advanced Communications Technology Satellite (ACTS). Four 1994 campaigns were executed during weekly periods in and around Austin, Texas in February and May, in Central Maryland during March, and in Fairbanks, Alaska and environs in June. Measurements tested the following effects at 20 GHz: (1) attenuation due to roadside trees with and without foliage, (2) multipath effects for scenarios in which line-of-sight paths were unshadowed, (3) fades due to terrain and roadside obstacles, (4) fades due to structures in urban environs, (5) single tree attenuation, and (6) effects of fading at low elevation angles (8 deg in Fairbanks, Alaska) and high elevation angles (55 deg in Austin, Texas). Results presented here cover sampled measurements in Austin, Texas for foliage and non-foliage cases and in Central Maryland for non-foliage runs.

Goldhirsh, Julius↗
NASA NTRS2014

Abrupt Increases in Amazonian Tree Mortality Due to Drought-Fire Interactions

Interactions between climate and land-use change may drive widespread degradation of Amazonian forests. High-intensity fires associated with extreme weather events could accelerate this degradation by abruptly increasing tree mortality, but this process remains poorly understood. Here we present, to our knowledge, the first field-based evidence of a tipping point in Amazon forests due to altered fire regimes. Based on results of a large-scale, longterm experiment with annual and triennial burn regimes (B1yr and B3yr, respectively) in the Amazon, we found abrupt increases in fire-induced tree mortality (226 and 462%) during a severe drought event, when fuel loads and air temperatures were substantially higher and relative humidity was lower than long-term averages. This threshold mortality response had a cascading effect, causing sharp declines in canopy cover (23 and 31%) and aboveground live biomass (12 and 30%) and favoring widespread invasion by flammable grasses across the forest edge area (80 and 63%), where fires were most intense (e.g., 220 and 820 kW x m(exp −1)). During the droughts of 2007 and 2010, regional forest fires burned 12 and 5% of southeastern Amazon forests, respectively, compared with less than 1% in nondrought years. These results show that a few extreme drought events, coupled with forest fragmentation and anthropogenic ignition sources, are already causing widespread fire-induced tree mortality and forest degradation across southeastern Amazon forests. Future projections of vegetation responses to climate change across drier portions of the Amazon require more than simulation of global climate forcing alone and must also include interactions of extreme weather events, fire, and land-use change.

MODIS↗
NASA NTRS1973

Determine the utility of ERTS-1 imagery in the preparation of hydrologic atlases of arid land watersheds

The author has identified the following significant results. The 9x9-inch transparencies from the ERTS-1 system seem to have better contrast in vegetation and drainage features than the 70-mm transparencies. This imagery can be magnified about eight times before it becomes excessively grainy. Imagery in band 7 appears to be the best single band product for viewing landform-water complexes. Band 5 best defines vegetation patterns. Multispectral color-additive viewing would appear to improve the separation of vegetation types where the vegetation exhibits moderate to strong infrared reflectance. Multispectral viewing did not appear to improve relief of drainage channel detail. False-color aerial infrared photographs at a scale of 1:120,000 for the Utah test site are excellent quality and can be magnified as much as 15 times without serious loss of contrast or excessive fuzziness. In desert areas with sparse to moderate shrub cover, the contrast between the soil background and the plant cover is so low that texture cannot be seen, even under high magnification. In areas of higher rainfall during the summer it is possible to discriminate coniferous and deciduous trees, grass, and shrub communities and to identify different rangeland treatment practices.

Shown, L. M.↗
NASA NTRS1978

Identification of wood energy resources in central Michigan

Existing biomass studies were compiled for determining their applicability in measuring forest biomass in an entirely new way. Over sixty tree-weight tables were prepared from existing tables or formulas. An estimate of forest biomass was made on a defined area by using Landsat Satellite data analysis, existing forest cover type maps and actual weighting of the entire biomass. Control plots were cruised for normal volume data and weight data, harvested and weighed to determine actual tonnage yields.

Hudson, W. D.↗
DOE OSTI2025

Extreme heat vulnerability of manufactured housing in arid urban environments

This article explores the role of land cover in relation to housing type and tenure in shaping exposure to extreme urban heat, focusing on residents of mobile and manufactured housing (MH). We hypothesize that MH residents will experience greater exposure to extreme heat than those living in other housing types due to lower levels of proximate vegetation. This hypothesis is based on the unique property relations and tenure regimes that characterize MH, which may disincentivize investments in planting and maintaining trees and vegetation in arid environments. To test this hypothesis, we compare the amount of vegetation on properties across housing types, within-type tenure arrangements and between three urbanized areas in Arizona with different levels of exposure to extreme heat. To conduct this comparison, we combine multispectral land cover data for 1.7 million parcels with tax assessor data and building footprints to measure land cover at a high resolution. We find that MH units have significantly less vegetation than single-family residential properties, and that MH units in MH parks have less vegetation than those on individual lots. We conclude that municipalities should promote (e.g. through incentives or other policy interventions) the planting of more vegetation around MH units where there is a risk of extreme heat exposure. Future research can expand this analysis with a closer examination of how municipal ordinances and policies affect land cover by housing type and tenure.

heat↗
DOE OSTI2022

Remote sensing of cytotype and its consequences for canopy damage in quaking aspen

Abstract Mapping geographic mosaics of genetic variation and their consequences via genotype x environment interactions at large extents and high resolution has been limited by the scalability of DNA sequencing. Here, we address this challenge for cytotype (chromosome copy number) variation in quaking aspen, a drought‐impacted foundation tree species. We integrate airborne imaging spectroscopy data with ground‐based DNA sequencing data and canopy damage data in 391 km 2 of southwestern Colorado. We show that (1) aspen cover and cytotype can be remotely sensed at 1 m spatial resolution, (2) the geographic mosaic of cytotypes is heterogeneous and interdigitated, (3) triploids have higher leaf nitrogen, canopy water content, and carbon isotope shifts (δ 13 C) than diploids, and (4) canopy damage varies among cytotypes and depends on interactions with topography, canopy height, and trait variables. Triploids are at higher risk in hotter and drier conditions.

Blonder, Benjamin↗
NASA NTRS2005

Parallel Adaptive Mesh Refinement Library

Parallel Adaptive Mesh Refinement Library (PARAMESH) is a package of Fortran 90 subroutines designed to provide a computer programmer with an easy route to extension of (1) a previously written serial code that uses a logically Cartesian structured mesh into (2) a parallel code with adaptive mesh refinement (AMR). Alternatively, in its simplest use, and with minimal effort, PARAMESH can operate as a domain-decomposition tool for users who want to parallelize their serial codes but who do not wish to utilize adaptivity. The package builds a hierarchy of sub-grids to cover the computational domain of a given application program, with spatial resolution varying to satisfy the demands of the application. The sub-grid blocks form the nodes of a tree data structure (a quad-tree in two or an oct-tree in three dimensions). Each grid block has a logically Cartesian mesh. The package supports one-, two- and three-dimensional models.

Mac-Neice, Peter↗