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DOE OSTI2021

Tools for supporting solution scattering during the COVID-19 pandemic

During the COVID-19 pandemic, synchrotron beamlines were forced to limit user access. Performing routine measurements became a challenge. At the Life Science X-ray Scattering (LiX) beamline, new instrumentation and mail-in protocols have been developed to remove the access barrier to solution scattering measurements. Our efforts took advantage of existing instrumentation and coincided with the larger effort at NSLS-II to support remote measurements. Given the limited staff–user interaction for mail-in measurements, additional software tools have been developed to ensure data quality, to automate the adjustments in data processing, as users would otherwise rely on the experience of the beamline staff, and produce a summary of the initial assessments of the data. This report describes the details of these developments.

99 GENERAL AND MISCELLANEOUS↗

DOE OSTI2024

Laboratory Upgrade Point Absorber (LUPA) CAD Files

The Laboratory Upgrade Point Absorber (LUPA) is an open-source wave energy converter designed and tested by Oregon State University. The computer-aided design (CAD) files are provided here in two forms: the original SOLIDWORKS (2021) model as "LUPA SOLIDWORKS.zip" and as a STEP file "LUPA-A1000.step". The bill of materials is provided as an Excel file with assemblies (LUPA-Axxx), part numbers (LUPA-Axxx-Pyyy), part descriptions, manufacturers, and manufacturer part numbers. This comprehensive CAD model represents LUPA as it was deployed in Fall 2022 testing at the O.H. Hinsdale Wave Research Laboratory. The mass properties including mass, center of gravity, and moments of inertia have been overridden for some parts and assemblies to match the physical device properties as determined from experiments. This appears as "overridden by user" when viewing mass properties in SOLIDWORKS. The LUPA-A1000.SLDASM file from the LUPA SOLIDWORKS.zip folder is the topmost assembly, open this file to see the entire model as one assembly. See "PMEC Page", "OpenEI Wiki Page", and the "Signature Project Page" resources below for more information on LUPA.

16 TIDAL AND WAVE POWER↗

DOE OSTI2025

FRIB operations: first three years

During the first three years since May 2022, FRIB has been operating safely meeting expectations of both scientific and industrial users with high machine availability, while ramping up the beam power to 20 kW for heavy ions including uranium. The paper summarizes the operational experience and challenges, accelerator improvement projects, expansions in user stations, accelerator R&D and workforce growth programs, and preparation for facility upgrades.

Wei, Jie [Michigan State U.]↗

DOE OSTI2020

Measuring and Simulating T1 and T2 for Qubits

Quantum computers perform computations exploiting quantum mechanics to a possible advantage, allowing us to prepare and manipulate states that do not have a classical equivalent. In particular, phenomena like superposition and entanglement may enable quantum computers to outperform their classical counterparts in certain applications. Implementing these useful quantum algorithms is contingent upon building accurate quantum hardware that is not affected by noise. Environmental noise decreases coherence time of qubits, meaning that qubits do not stay in a desired state long enough to carry out a complex computation. To that end, harnessing the full power of quantum computers necessitate characterization of noise sources and how they impact a given quantum system. Often times, T1and T2 are used to quantify noise. In this project, we provide an approach as to how T1 and T2 values are calculated and simulated for quantum systems. In addition, we compare simulated values of T1 and T2 with those of real quantum computer’s measurements. IBMQ Experience, an open source software allowing users to simulate and use real quantum hardware, is used. QuTip, a Python-based toolbox offering quantum simulation tools for open quantum systems, is also used.

Youssef, Rahaf↗

DOE OSTI2020

Bradbury Science Museum NOTEs Program Docs: Building Immunity: How fighting HIV and other viruses helps us understand our immune system

Building Immunity is a unique opportunity to journey through the history and development of your immune system. Our interactive touch table invites each user to choose their own, unique experience as they learn about how fighting HIV and other viruses helps researchers understand how our own immune systems work to keep us healthy. From the Bradbury Science Museum of Los Alamos National Laboratory, the exhibit presents remarkable insight into one of the most ancient and well-traveled organisms on the planet, viruses. Viral epidemics like the H1N1 flu, which killed over 40 million people in 1918, devastate communities around the world and destabilize regions around the globe. Additionally, their ability to mutate quickly creates a “Red Queen” effect, or loop of treated and then treatment-resistant strains of deadly diseases. Increased understanding of the relationships between viruses and our own immune system is crucial to the development of improved treatments and novel vaccines and this research is happening right now at Los Alamos National Laboratory.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2023

TRACER-Vertical Profile of Aerosol in Convective System (TRACER-VPACS) Field Campaign Report

We investigated physicochemical properties of aerosol at different altitudes during the U.S. Department of Energy (DOE)’s Atmospheric Radiation Measurement (ARM) user facility Tracking Aerosol Convection Interactions Experiment (TRACER). We used ARM’s tethered balloon system (TBS) and multi-modal offline analysis techniques available at DOE’s Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory (PNNL) and at the Advanced Light Source (ALS) at the Lawrence Berkley National Laboratory (LBNL). The main scientific aim of this project was to understand the influence of the vertical profile of aerosol composition on the properties of deep convective clouds. The effect of aerosol properties on convective activity is still poorly understood and debated. For example, previous studies suggested that higher concentration of hygroscopic aerosol may lead to lower collection efficiency and eventually delay in onset of precipitation and total amount of precipitation. However, some observations suggested that increased aerosol concentration may result in vigorous convection and a higher amount of precipitation. In addition, the radiative forcing of the ambient aerosol is strongly influenced by the vertical distribution of aerosols and their chemical composition, and not well constrained in climate models. The estimation of the indirect effect of aerosol also has a significant uncertainty due to the spatial variation of the aerosol, especially at the cloud base. Detailed size-resolved chemical composition studies of aerosol and their microphysical properties, along with in situ measurements from ARM’s mobile facilities, help to improve our understanding of the role of aerosol in deep convective cloud formation over a broad range of environmental thermodynamic and aerosol conditions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

TRACER-BC2-SP2 Field Campaign Report

The focus of this project was to assess black carbon and brown carbon aerosol in Houston, Texas during the U.S. Department of Energy’s Atmospheric Radiation Measurement (ARM) user facility Tracking Aerosol Convection Interactions Experiment (TRACER) through the co-located deployment of a single-particle soot photometer (SP2) with the University of Houston/Baylor aerosol optical instrumentation in the Texas (BC)2 network in and around Houston. The deployment of the SP2 enables us to expand the spatial assessment of black carbon (BC) in Houston during TRACER by permitting a more thorough characterization of BC, including sources, transport, and potential processing. BC is well known to undergo physical and chemical changes during local and long-range transport that will impact its optical properties. By deploying multiple SP2s in the Houston area, the impacts of local and long-range transport can be assessed. The TRACER-BC2-SP2 campaign will expand spatial and temporal characterization of BC in the Houston area during TRACER and link the TRACER-carbon analysis to ongoing black and brown carbon monitoring (Texas [BC]2 network) in Houston.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Human Factors and Technologies Design to Improve User Acceptance of Pooled Rideshare for Increasing Transportation System Energy Efficiency

This multi-year project delivered a comprehensive, human-factors-driven framework to understand, model, and improve pooled rideshare (PR) adoption in the United States. Through three large-scale national survey studies involving more than 16,000 participants across multiple cities and demographic groups, the research established one of the most extensive datasets to date on user perceptions, behavioral barriers, and service expectations related to pooled rideshare. These data revealed key human factors barriers of user acceptance of PR and suggested potential actionable experience optimizations that could lead to increased PR usage. This foundational knowledge guided the development of novel human-factors models and behavioral choice models that quantify how psychological, demographic, and trip-level factors influence willingness to pool. Building on these empirical insights, the project developed advanced behavioral modeling tools, including mixed logit and integrated choice and latent variable models, to capture both observable and latent influences on PR adoption. These models significantly improved the ability to predict riders’ acceptance of pooled trips, explaining choice heterogeneity through latent constructs such as safety, service experience, privacy concerns, time sensitivity, and environmental attitudes. Together, these models provide a robust analytical foundation for designing PR systems that more effectively meet user needs. The project translated human-factors insights and behavioral models into actionable technology innovations by extending POLARIS—an agent-based, activity-based travel simulation platform—into a fully functional pooled rideshare simulation environment. New PR modules, acceptance models, and regional scenarios were implemented for Greenville, SC and Austin, TX, enabling high-fidelity validation of algorithmic strategies under realistic demand and traffic conditions. The simulation platform supported the development and evaluation of adaptive discount-based assignment algorithms, enhanced willingness-to-pay formulations, demographic-aware incentive mechanisms, and a proactive joint assignment and repositioning strategy. Simulation results demonstrated substantial gains in pooling uptake, average vehicle occupancy, energy efficiency, and fleet profitability. In Greenville, pooling adoption more than doubled, while reductions in vehicle-miles traveled and energy consumption were significant. In Austin, pooling improvements were achieved with minimal service-quality trade-offs, and profitability increased across all fleet sizes. Through this research, we developed a comprehensive understanding of the human factors barriers that limit user acceptance of pooled rideshare services. These insights enabled the design of human-factors-aware pooled rideshare technologies that more effectively address user concerns and improve adoption rates. By integrating these models into an advanced agent-based simulation framework, we demonstrated that higher adoption of pooled rideshare can lead to measurable improvements in energy efficiency and system performance. Together, these contributions establish a validated pathway from human-centered analysis to technology development and energy-saving outcomes, supporting national goals for more sustainable and efficient mobility systems.

Jia, Yunyi↗

DOE OSTI2024

Stable Isotope and Geochemical Evidence for Hydrological Isolation in an Arctic Coastal Plain Landscape, Barrow, Alaska, 2013

Data include results from water chemistry and water isotope analyses for samples collected in Barrow, Alaska during July and September 2013. Samples were from surface and soil pore waters from 15 locations: 3 locations from interlake polygonal terrain, 6 locations associated with interlake drainages, and 6 locations within or at the outlets of different aged drained thaw lake basins (DTLBs). Samples were taken in different drainage flow types at three different depths at each location in and around the Barrow Environmental Observatory. This dataset includes one .csv data file and one .pdf user guide.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Frost Table Elevation across a Low-Centered and a High-Centered Polygon, Mapped using Ground Penetrating Radar, Utqiagvik (Barrow), Alaska, 2015

Ground Penetrating Radar, active layer thickness point measurements, and ground elevation surveys were conducted on a low-centered and a high-centered polygon in Utqiagvik (Barrow), AK (on October 2nd, 2015) to map frost table topography and evaluate its influence on hydrological flow. Data were collected to improve our understanding of the topography of the permafrost table across polygons which may have a major influence on hydrology. This dataset includes 2 zip files containing the raw data, 2 csv files of processed data, and a pdf user guide.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Soil CO2 and CH4 Chamber Fluxes in Tussock Tundra, Council Road Mile Marker 71, Seward Peninsula, Alaska, 2016-2019

In August-September 2016, June-August 2017, June-August 2018, and June 2019, co-located measurements were made of surface CH4 and CO2 flux, soil temperature, moisture, and thaw depth. Measurements were made at 35 chamber locations at the Council Mile Marker 71 Site (CN_MM71) on the Seward Peninsula, Alaska. Chamber locations include upland moist acidic tussock tundra, thermo-erosional slopes, and periodically inundated lowland water channels. The dataset includes three *.csv data files with measurements using transparent and opaque chambers (CO2 and CH4 fluxes in light and dark) plus one *.pdf user guide.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

PNNL-Predictive-Phenomics/ProteoMeter

ProteoMeter is a Python package that assists in the statistical analysis of global proteomics, protein post-translation modification (PTM), and limited proteolysis (LiP) data. It contains batch correction, normalization, and statistical testing methods, as well as functions that "roll up" peptide-level data to the single-site level. It has a robust user configuration system, allowing it to flexibly integrate different types of experiment designs. For basic usage, a simple configuration file provides the essential functionality. Advanced users have access to the entire statistical pipeline for fine-tuning analyses. Processed data is easily exported to many common spreadsheet and data-frame formats.

Rozum, Jordan [Pacific Northwest National Lab]↗

DOE OSTI2025

pdas-experiments

SAND2025-04589O pdas-experiments automates computational experiments of fluid flow simulations. It uses the pressio-demoapps-schwarz package as a basis to break down complex simulations into smaller, manageable parts. This application is an extension of the Sandia Pressio software which uses domain decomposition to work with complex simulations more efficiently. Users can test different simulation setups, while keeping a detailed record of their experiments so they can be reproduced later. The software includes a C++ program that runs individual experiments based on user-defined settings in a YAML file, as well as a Python script that can manage multiple simulations at once. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Tezaur, Irina [Sandia National Lab. (SNL-CA), Live↗

DOE OSTI2021

Convolutional neural network based non-iterative reconstruction for accelerating neutron tomography *

Abstract Neutron computed tomography (NCT), a 3D non-destructive characterization technique, is carried out at nuclear reactor or spallation neutron source-based user facilities. Because neutrons are not severely attenuated by heavy elements and are sensitive to light elements like hydrogen, neutron radiography and computed tomography offer a complementary contrast to x-ray CT conducted at a synchrotron user facility. However, compared to synchrotron x-ray CT, the acquisition time for an NCT scan can be orders of magnitude higher due to lower source flux, low detector efficiency and the need to collect a large number of projection images for a high-quality reconstruction when using conventional algorithms. As a result of the long scan times for NCT, the number and type of experiments that can be conducted at a user facility is severely restricted. Recently, several deep convolutional neural network (DCNN) based algorithms have been introduced in the context of accelerating CT scans that can enable high quality reconstructions from sparse-view data. In this paper, we introduce DCNN algorithms to obtain high-quality reconstructions from sparse-view and low signal-to-noise ratio NCT data-sets thereby enabling accelerated scans. Our method is based on the supervised learning strategy of training a DCNN to map a low-quality reconstruction from sparse-view data to a higher quality reconstruction. Specifically, we evaluate the performance of two popular DCNN architectures—one based on using patches for training and the other on using the full images for training. We observe that both the DCNN architectures offer improvements in performance over classical multi-layer perceptron as well as conventional CT reconstruction algorithms. Our results illustrate that the DCNN can be a powerful tool to obtain high-quality NCT reconstructions from sparse-view data thereby enabling accelerated NCT scans for increasing user-facility throughput or enabling high-resolution time-resolved NCT scans.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2022

Developments in SRW Code and Sirepo Framework Supporting Simulation of Time-Dependent Coherent X-ray Scattering Experiments

Physical optics simulations for beamlines and experiments are essential for the effective use of synchrotron light source facilities such as NSLS-II at BNL. The SRW software package supports such source-to-detector simulations for coherent X-ray scattering and imaging experiments through its Python interface and Sirepo browser-based graphical user interface. This allows one to define custom sample models, assess the feasibility of an experiment, and estimate most appropriate beamline settings before using valuable beamtime. We discuss the recent use of general-purpose GPU resources and coherent mode decomposition algorithms in SRW to accelerate physical optics simulations with partially coherent X-rays. To illustrate these new capabilities, we describe simulations of typical time series of partially coherent scattering images used in X-ray Photon Correlation Spectroscopy (XPCS) experiments; aiming to characterize the nanoscale dynamics of a disordered sample, representing a solution of nanoparticles undergoing Brownian diffusion.

36 MATERIALS SCIENCE↗

DOE OSTI2026

Graphical User Interface for a Biasing Board for the PSEC6

The PSEC6 is an application-specific integrated circuit (ASIC) designed for a readout system for a large area picosecond photodetector (LAPPD). The PSEC6 is currently in fabrication and pending testing. The testing system for the PSEC5, the previous iteration of the ASIC, required expensive and non-portable equipment, because the ASIC needs twelve adjustable reference voltages. The new testing system consists of an low-cost, open-source, cross-platform graphical user interface (GUI), a digital system, and a biasing board. The digital system is the interface between the GUI and biasing board, and can be implemented on a microcontroller or field-programmable gate array (FPGA). The biasing board contains twelve digital-to-analog converters (DACs) that are configurable via the GUI, which gives users the ability to write voltage values to all or specific DACs. The GUI was developed in C on Linux using the widget library GTK4 and cross-compiled for Windows compatibility. I2C and SPI protocols were implemented on an Adafruit Feather ESP32-S3 microcontroller to write commands to the DACs and PSEC6. A hardware implementation of the I2C protocol is in development on an FPGA. Since LAPPDs will be used by the Accelerator Neutrino Neutron Interaction Experiment (ANNIE) at Fermilab, the PSEC6 testing system in this internship project can potentially benefit future neutrino research. The project is relevant to the Department of Energy’s microelectronics mission, because the PSEC6 is an ASIC that will handle fast time signals arriving from the detector for readout. It also provided experience with building a cross-platform user interface, practicing digital design and implementation in hardware description language (HDL), and using simulations to inform new design iterations.

Guerrero, Sasha Camila [North Central Coll.]↗

DOE OSTI2026

Graphical User Interface for a Biasing Board for the PSEC6

Guerrero, Sasha Camila [North Central Coll.]↗

DOE OSTI2020

Milling stability identification using Bayesian machine learning

This paper describes automated identification of the milling stability boundary using Bayesian machine learning and experiments. The Bayesian machine learning process begins with the user’s initial beliefs about milling stability. This “prior” is a distribution that uses all available information, which may be based only on experience or may be informed by physics-based model predictions. Experiments are then completed to update this prior by calculating the “posterior,” a modified probabilistic description of the milling stability limit based on the new information. The approach is demonstrated and results are presented for both numerical and experimental cases.

Karandikar, Jaydeep↗