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At least 271 records · Page 15

Extending empirical constraints on the SZ–mass scaling relation to higher redshifts via HST weak lensing measurements of nine clusters from the SPT-SZ survey at z ≳ 1

We present a Hubble Space Telescope (HST) weak gravitational lensing study of nine distant and massive galaxy clusters with redshifts 1.0 ≲ z ≲ 1.7 (z median = 1.4) and Sunyaev Zel’dovich (SZ) detection significance ξ > 6.0 from the South Pole Telescope Sunyaev Zel’dovich (SPT-SZ) survey. We measured weak lensing galaxy shapes in HST/ACS F606W and F814W images and used additional observations from HST/WFC3 in F110W and VLT/FORS2 in U HIGH to preferentially select background galaxies at z ≳ 1.8, achieving a high purity. We combined recent redshift estimates from the CANDELS/3D-HST and HUDF fields to infer an improved estimate of the source redshift distribution. We measured weak lensing masses by fitting the tangential reduced shear profiles with spherical Navarro-Frenk-White (NFW) models. We obtained the largest lensing mass in our sample for the cluster SPT-CL J2040—4451, thereby confirming earlier results that suggest a high lensing mass of this cluster compared to X-ray and SZ mass measurements. Combining our weak lensing mass constraints with results obtained by previous studies for lower redshift clusters, we extended the calibration of the scaling relation between the unbiased SZ detection significance ζ and the cluster mass for the SPT-SZ survey out to higher redshifts. We found that the mass scale inferred from our highest redshift bin (1.2 < z < 1.7) is consistent with an extrapolation of constraints derived from lower redshifts, albeit with large statistical uncertainties. Thus, our results show a similar tendency as found in previous studies, where the cluster mass scale derived from the weak lensing data is lower than the mass scale expected in a PlanckνΛCDM (i.e. νΛ cold dark matter) cosmology given the SPT-SZ cluster number counts.

79 ASTRONOMY AND ASTROPHYSICS↗

Recombination smooths the time-signal disrupted by latency in within-host HIV phylogenies

Within-host HIV evolution involves several features that may disrupt standard phylogenetic reconstruction. One important feature is re-activation of latently integrated provirus, which has the potential to disrupt the temporal signal, leading to variation in the branch lengths and apparent evolutionary rates in a tree. Yet, real within-host HIV phylogenies tend to show clear, ladder-like trees structured by the time of sampling. Another important feature is recombination, which violates the fundamental assumption that evolutionary history can be represented by a single bifurcating tree. Thus, recombination complicates the within-host HIV dynamic by mixing genomes and creating evolutionary loop structures that cannot be represented in bifurcating trees. In this paper, we develop a coalescent-based simulator of within-host HIV evolution that includes latency, recombination, and effective population size dynamics that allows us to study the relationship between the true, complex genealogy of within-host HIV evolution, encoded as an Ancestral Recombination Graph (ARG), and the observed phylogenetic tree. To compare our ARG results to the familiar phylogeny format, we calculate the expected bifurcating tree after decomposing the ARG into all unique site trees, their combined distance matrix, and the overall corresponding bifurcating tree. While latency and recombination separately disrupt the phylogenetic signal, remarkably, we find that recombination recovers the temporal signal of within-host HIV evolution caused by latency by mixing fragments of old, latent genomes into the contemporary population. In effect, recombination averages over extant heterogeneity, whether it stems from mixed time-signals or population bottlenecks. Further, we establish that the signals of latency and recombination can be observed in phylogenetic trees despite being an incorrect representation of the true evolutionary history. Using an Approximate Bayesian Computation method, we develop a set of statistical probes to tune our simulation model to nine longitudinally-sampled within-host HIV phylogenies. Because ARGs are exceedingly difficult to infer from real HIV data, our simulation system allows investigating effects of latency, recombination, and population size bottlenecks by matching decomposed ARGs to real data as observed in standard phylogenies.

59 BASIC BIOLOGICAL SCIENCES↗

Empirical radius formulas for canonical neutron stars from bidirectionally selecting features of equations of state in extended Bayesian analyses of observational data

Significant advancement in Bayesian inference of nuclear equation of state (EOS) from gravitational wave and x-ray observations of neutron stars (NSs) has been made by the nuclear astrophysics community especially since GW170817. By extending the traditional Bayesian analysis which normally ends at presenting the marginalized posterior probability distribution functions (PDFs) of individual EOS parameters and their correlations (or sometimes only the Pearson correlation coefficients which are only reliably useful when the variables are linearly correlated while they are actually often not), we search for a data-driven and robust empirical formula for the radius 𝑅 1.4 of canonical NSs in terms of the characteristic EOS parameters (features). We also identify the single most important but currently poorly known EOS parameter for determining the 𝑅 1.4 . Using three regression-model-building methodologies: bidirectional stepwise feature selection, least absolute shrinkage selection operator (LASSO) regression, and neural network regression on a large set of posterior EOSs and the corresponding 𝑅 1.4 values inferred from earlier comprehensive Bayesian analyses of NS observational data, we systematically and rigorously develop the most probable 𝑅 1.4 formulas with varying statistical accuracy and technical complexity. Here, the most important EOS parameters for determining 𝑅 1.4 are found consistently in each of the feature selection processes to be (in order of decreasing importance): curvature 𝐾 sym , slope 𝐿, skewness 𝐽 sym of nuclear symmetry energy, skewness 𝐽 0 , incompressibility 𝐾 0 of symmetric nuclear matter, and the magnitude 𝐸 sym ⁡(𝜌 0 ) of symmetry energy at the saturation density 𝜌 0 of nuclear matter.

Bayesian methods↗

Evaporation Induced Entrainment of Contaminants from Evaporating and Burning Liquids.

This interim report details model development, theory, and a literature review focusing on the evaporation induced entrainment (sub-boiling) of contaminated liquids. Entrainment from a variety of sources is the topic of DOE Handbook 3010, and this report deals more broadly with fire related airborne sources of contaminants in hazardous operations. Relatively few studies have examined sub-boiling behavior in the past, however, it can be a phenomenon that presents a fire related risk under hazardous operations. Molecular dynamics simulations are used to infer the gaseous evolution of coordinated complexes, and a model for a water/plutonium/nitrate system is deduced from the simulation results by evaluating the statistical trends of the results. Questions remain as to the chemical reactivity and longevity of entrained species. A generalized computer model capability and simple analytical model assumptions are developed for predicting the results of these and other (boiling and solid entrainment) scenarios. Verification related predictions using these models are illustrated.

36 MATERIALS SCIENCE↗

Expanded genetic variation (SNP) and phenomics (image based) dataset for Populus trichocarpa

The image dataset consists of 11,791 images representing 1,219 genotypes of Populus trichocarpa undergoing in planta regeneration. Genotypes were imaged with a median of four weekly timepoints and a median of two replicates each. A representative and diverse subset of 249 images was annotated using the IDEAS annotation interface (ideas.eecs.oregonstate.edu) and these annotated images were used to train a deep semantic segmentation model (PSPNet), which was deployed for inference over the entire dataset. Annotated classes include specific stages of regeneration (callus and shoot) in addition to unregenerated plant material and background. Statistics of relative tissue area were extracted and used for downstream genetic association mapping in a genome-wide association study. The SNP dataset consists of over 40 million single-nucleotide polymorphisms across 1,323 wild accessions of Populus trichocarpa

09 BIOMASS FUELS↗

Comprehensive Neural Posterior Estimation for Galaxy-Galaxy Strong Lensing

We present a deep learning model based on neural posterior estimation (NPE) for comprehensive extraction of astrophysical parameters from galaxy-scale strong gravitational lenses. The unprecedentedly large amount of galaxy-scale strong lenses expected in future cosmological surveys (${\cal O}(10^5)$) promises to enable valuable statistical constraints in various studies ranging from galaxy formation to the nature of dark matter, but it also poses a significant challenge for traditional modelling pipelines. To this end, our automated model includes several new, state-of-the-art features and approaches leveraging the framework of simulation-based inference (SBI). We infer a total of 20 parameters describing the mass and light profiles of both lens and source galaxies, using simulated raw multi-band data modelled under noise and observing conditions expected by the Legacy Survey of Space and Time (LSST), with its summary statistics generated by a residual network. We examine the efficacy of multi-band data in extracting nearly 20 model parameters simultaneous from strong lensing images including lens light. Finally, We perform a comprehensive set of diagnostics for SBI models, evaluating the model's prediction accuracy, stability, and uncertainty quantification.

Zhao, Roy J. [Chicago U., KICP]↗

Estimation of stagnation performance metrics in magnetized liner inertial fusion experiments using Bayesian data assimilation

Here we present a new analysis methodology that allows for the self-consistent integration of multiple diagnostics including nuclear measurements, x-ray imaging, and x-ray power detectors to determine the primary stagnation parameters, such as temperature, pressure, stagnation volume, and mix fraction in magnetized liner inertial fusion (MagLIF) experiments. The analysis uses a simplified model of the stagnation plasma in conjunction with a Bayesian inference framework to determine the most probable configuration that describes the experimental observations while simultaneously revealing the principal uncertainties in the analysis. We validate the approach by using a range of tests including analytic and three-dimensional MHD models. An ensemble of MagLIF experiments is analyzed, and the generalized Lawson criterion χ is estimated for all experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

The members of the tribe Brassiceae share a whole-genome triplication (WGT), and one proposed model for its formation is a two-step pair of hybridizations producing hexaploid descendants. However, evidence for this model is incomplete, and the evolutionary and functional constraints that drove evolution after the hexaploidy are even less understood. Here, we report a new genome sequence of Crambe hispanica , a species sister to most sequenced Brassiceae. Using this new genome and three others that share the hexaploidy, we traced the history of gene loss after the WGT using the Polyploidy Orthology Inference Tool (POInT). We confirm the two-step formation model and infer that there was a significant temporal gap between those two allopolyploidizations, with about a third of the gene losses from the first two subgenomes occurring before the arrival of the third. We also, for the 90,000 individual genes in our study, make parental subgenome assignments, inferring, with measured uncertainty, from which of the progenitor genomes of the allohexaploidy each gene derives. We further show that each subgenome has a statistically distinguishable rate of homoeolog losses. There is little indication of functional distinction between the three subgenomes: the individual subgenomes show no patterns of functional enrichment, no excess of shared protein-protein or metabolic interactions between their members, and no biases in their likelihood of having experienced a recent selective sweep. We propose a "mix and match" model of allopolyploidy, in which subgenome origin drives homoeolog loss propensities but where genes from different subgenomes function together without difficulty.

59 BASIC BIOLOGICAL SCIENCES↗

Neural simulation-based inference approach for characterizing the Galactic Center γ-ray excess

The nature of the Fermi γ-ray Galactic Center Excess (GCE) has remained a persistent mystery for over a decade. Although the excess is broadly compatible with emission expected due to dark matter annihilation, an explanation in terms of a population of unresolved astrophysical point sources e.g., millisecond pulsars, remains viable. The effort to uncover the origin of the GCE is hampered in particular by an incomplete understanding of diffuse emission of Galactic origin. This can lead to spurious features that make it difficult to robustly differentiate smooth emission, as expected for a dark matter origin, from more “clumpy” emission expected from a population of relatively bright, unresolved point sources. Here, we use recent advancements in the field of simulation-based inference, in particular density estimation techniques using normalizing flows, in order to characterize the contribution of modeled components, including unresolved point source populations, to the GCE. Compared to traditional techniques based on the statistical distribution of photon counts, our machine learning-based method is able to utilize more of the information contained in a given model of the Galactic Center emission, and in particular can perform posterior parameter estimation while accounting for pixel-to-pixel spatial correlations in the γ-ray map. This makes the method demonstrably more resilient to certain forms of model misspecification. On application to Fermi data, the method generically attributes a smaller fraction of the GCE flux to unresolved point sources when compared to traditional approaches. We nevertheless infer such a contribution to make up a non-negligible fraction of the GCE across all analysis variations considered, with at least $38^{+9}_{-19}$% of the excess attributed to unresolved point sources in our baseline analysis.

79 ASTRONOMY AND ASTROPHYSICS↗

2D-FFTLog: efficient computation of real-space covariance matrices for galaxy clustering and weak lensing

ABSTRACT Accurate covariance matrices for two-point functions are critical for inferring cosmological parameters in likelihood analyses of large-scale structure surveys. Among various approaches to obtaining the covariance, analytic computation is much faster and less noisy than estimation from data or simulations. However, the transform of covariances from Fourier space to real space involves integrals with two Bessel integrals, which are numerically slow and easily affected by numerical uncertainties. Inaccurate covariances may lead to significant errors in the inference of the cosmological parameters. In this paper, we introduce a 2D-FFTLog algorithm for efficient, accurate, and numerically stable computation of non-Gaussian real-space covariances for both 3D and projected statistics. The 2D-FFTLog algorithm is easily extended to perform real-space bin-averaging. We apply the algorithm to the covariances for galaxy clustering and weak lensing for a Dark Energy Survey Year 3-like and a Rubin Observatory’s Legacy Survey of Space and Time Year 1-like survey, and demonstrate that for both surveys, our algorithm can produce numerically stable angular bin-averaged covariances with the flat sky approximation, which are sufficiently accurate for inferring cosmological parameters. The code CosmoCov for computing the real-space covariances with or without the flat-sky approximation is released along with this paper.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Optimal Cosmic Microwave Background Lensing Reconstruction and Parameter Estimation with SPTpol Data

Here, we perform the first simultaneous Bayesian parameter inference and optimal reconstruction of the gravitational lensing of the cosmic microwave background (CMB), using 100 deg 2 of polarization observations from the SPTpol receiver on the South Pole Telescope. These data reach noise levels as low as 5.8 μK arcmin in polarization, which are low enough that the typically used quadratic estimator (QE) technique for analyzing CMB lensing is significantly suboptimal. Conversely, the Bayesian procedure extracts all lensing information from the data and is optimal at any noise level. We infer the amplitude of the gravitational lensing potential to be ${A}_{\phi }=0.949\,\pm \,0.122$ using the Bayesian pipeline, consistent with our QE pipeline result, but with 17% smaller error bars. The Bayesian analysis also provides a simple way to account for systematic uncertainties, performing a similar job as frequentist "bias hardening" or linear bias correction, and reducing the systematic uncertainty on A Φ due to polarization calibration from almost half of the statistical error to effectively zero. Finally, we jointly constrain A Φ along with A L , the amplitude of lensing-like effects on the CMB power spectra, demonstrating that the Bayesian method can be used to easily infer parameters both from an optimal lensing reconstruction and from the delensed CMB, while exactly accounting for the correlation between the two. These results demonstrate the feasibility of the Bayesian approach on real data, and pave the way for future analysis of deep CMB polarization measurements with SPT-3G, Simons Observatory, and CMB-S4, where improvements relative to the QE can reach 1.5 times tighter constraints on A Φ and seven times lower effective lensing reconstruction noise.

79 ASTRONOMY AND ASTROPHYSICS↗

The cosmology dependence of galaxy clustering and lensing from a hybrid N -body–perturbation theory model

ABSTRACT We implement a model for the two-point statistics of biased tracers that combines dark matter dynamics from N-body simulations with an analytic Lagrangian bias expansion. Using Aemulus, a suite of N-body simulations built for emulation of cosmological observables, we emulate the cosmology dependence of these non-linear spectra from redshifts z = 0 to z = 2. We quantify the accuracy of our emulation procedure, which is sub-per cent at $k=1\, h \,{\rm Mpc}^{-1}$ for the redshifts probed by upcoming surveys and improves at higher redshifts. We demonstrate its ability to describe the statistics of complex tracer samples, including those with assembly bias and baryonic effects, reliably fitting the clustering and lensing statistics of such samples at redshift z ≃ 0.4 to scales of $k_{\rm max} \approx 0.6\, h\,\mathrm{Mpc}^{-1}$. We show that the emulator can be used for unbiased cosmological parameter inference in simulated joint clustering and galaxy–galaxy lensing analyses with data drawn from an independent N-body simulation. These results indicate that our emulator is a promising tool that can be readily applied to the analysis of current and upcoming data sets from galaxy surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

Mixed‐Phase Clouds Over the Southern Ocean as Observed From Satellite and Surface Based Lidar and Radar

Abstract This study investigates the occurrence of mixed‐phase clouds (MPC, i.e., cloud layers containing both liquid and ice water at sub‐freezing temperatures) over the Southern Ocean (SO) using space‐ and surface‐based lidar and radar observations. The occurrence of supercooled clouds is dominated by geometrically thin (<1 km) layers that rarely contain ice. We diagnose layers that are geometrically thicker than 1 km to contain ice ~65% and ~4% of the time from below by surface remote sensors and from above by orbiting remote sensors, respectively. We examine the discrepancy in MPC occurrence statistics as diagnosed from below and above the cloud layer. From above, we find that MPC occurrence has a gradient associated with the Antarctic Polar Front near 55°S with a rare occurrence of satellite‐derived MPC south of that latitude. In contrast, surface sensors find ice in 33% of supercooled liquid water layers. We infer using observing system simulation experiments and data analysis that space‐based lidar cannot identify the occurrence of MPC except when secondary ice‐forming processes operate in convection that is, sufficiently strong to loft ice crystals to cloud tops. We conclude that the CALIPSO phase statistics of MPC have a severe low bias in MPC occurrence. Based on surface‐based statistics in the SO, we present a parameterization of the frequency of MPC as a function of cloud top temperature that differs substantially from that used in recent climate model simulations.

54 ENVIRONMENTAL SCIENCES↗

Case studies in bias reduction and inference for electronic health record data with selection bias and phenotype misclassification

Electronic health records (EHR) are not designed for population‐based research, but they provide easy and quick access to longitudinal health information for a large number of individuals. Many statistical methods have been proposed to account for selection bias, missing data, phenotyping errors, or other problems that arise in EHR data analysis. However, addressing multiple sources of bias simultaneously is challenging. We developed a methodological framework (R package, SAMBA ) for jointly handling both selection bias and phenotype misclassification in the EHR setting that leverages external data sources. These methods assume factors related to selection and misclassification are fully observed, but these factors may be poorly understood and partially observed in practice. As a follow‐up to the methodological work, we demonstrate how to apply these methods for two real‐world case studies, and we evaluate their performance. In both examples, we use individual patient‐level data collected through the University of Michigan Health System and various external population‐based data sources. In case study (a), we explore the impact of these methods on estimated associations between gender and cancer diagnosis. In case study (b), we compare corrected associations between previously identified genetic loci and age‐related macular degeneration with gold standard external summary estimates. These case studies illustrate how to utilize diverse auxiliary information to achieve less biased inference in EHR‐based research.

60 APPLIED LIFE SCIENCES↗

A novel framework for increasing research transparency: Exploring the connection between diversity and innovation

A split sample/dual method research protocol is demonstrated to increase transparency while reducing the probability of false discovery. We apply the protocol to examine whether diversity in ownership teams increases or decreases the likelihood of a firm reporting a novel innovation using data from the 2018 United States Census Bureau’s Annual Business Survey. Transparency is increased in three ways: 1) all specification testing and identifying potentially productive models is done in an exploratory subsample that 2) preserves the validity of hypothesis test statistics fromde novoestimation in the holdout confirmatory sample with 3) all findings publicly documented in an earlier registered report and in this journal publication. Bayesian estimation procedures that leverage information from the exploratory stage included in the confirmatory stage estimation replace traditional frequentist null hypothesis significance testing. In addition to increasing statistical power by using information from the full sample, Bayesian methods directly estimate a probability distribution for the magnitude of an effect, allowing much richer inference. Estimated magnitudes of diversity along academic discipline, race, ethnicity, and foreign-born status dimensions are positively associated with innovation. A maximally diverse ownership team on these dimensions would be roughly six times more likely to report new-to-market innovation than a homophilic team.

Science & Technology - Other Topics↗

Giant Outer Transiting Exoplanet Mass (GOT ‘EM) Survey. I. Confirmation of an Eccentric, Cool Jupiter with an Interior Earth-sized Planet Orbiting Kepler-1514

Despite the severe bias of the transit method of exoplanet discovery toward short orbital periods, a modest sample of transiting exoplanets with orbital periods greater than 100 days is known. Long-term radial velocity (RV) surveys are pivotal to confirming these signals and generating a set of planetary masses and densities for planets receiving moderate to low irradiation from their host stars. Here we conduct RV observations of Kepler-1514 from the Keck I telescope using the High Resolution Echelle Spectrometer. From these data, we measure the mass of the statistically validated giant (1.108 ± 0.023 R {sub J}) exoplanet Kepler-1514 b with a 218-day orbital period as 5.28 ± 0.22 M {sub J}. The bulk density of this cool (∼390 K) giant planet is 4.82{sub −0.25}{sup +0.26}g cm{sup −3}, consistent with a core supported by electron degeneracy pressure. We also infer an orbital eccentricity of 0.401{sub −0.014}{sup +0.013} from the RV and transit observations, which is consistent with planet–planet scattering and disk cavity migration models. The Kepler-1514 system contains an Earth-size, Kepler Object of Interest on a 10.5-day orbit that we statistically validate against false-positive scenarios, including those involving a neighboring star. The combination of the brightness (V = 11.8) of the host star and the long period, low irradiation, and high density of Kepler-1514 b places this system among a rare group of known exoplanetary systems and as one that is amenable to continued study.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Modeling regional precipitation over the Indus River basin of Pakistan using statistical downscaling

Complex processes govern spatiotemporal distribution of precipitation within the high-mountainous headwater regions (commonly known as the upper Indus basin (UIB)), of the Indus River basin of Pakistan. Reliable precipitation simulations particularly over the UIB present a major scientific challenge due to regional complexity and inadequate observational coverage. Here, we present a statistical downscaling approach to model observed precipitation of the entire Indus basin, with a focus on UIB within available data constraints. Taking advantage of recent high altitude (HA) observatories, we perform precipitation regionalization using K-means cluster analysis to demonstrate effectiveness of low-altitude stations to provide useful precipitation inferences over more uncertain and hydrologically important HA of the UIB. We further employ generalized linear models (GLM) with gamma and Tweedie distributions to identify major dynamic and thermodynamic drivers from a reanalysis dataset within a robust cross-validation framework that explain observed spatiotemporal precipitation patterns across the Indus basin. Final statistical models demonstrate higher predictability to resolve precipitation variability over wetter southern Himalayans and different lower Indus regions, by mainly using different dynamic predictors. The modeling framework also shows an adequate performance over more complex and uncertain trans-Himalayans and the northwestern regions of the UIB, particularly during the seasons dominated by the westerly circulations. However, the cryosphere-dominated trans-Himalayan regions, which largely govern the basin hydrology, require relatively complex models that contain dynamic and thermodynamic circulations. Furthermore, we also analyzed relevant atmospheric circulations during precipitation anomalies over the UIB, to evaluate physical consistency of the statistical models, as an additional measure of reliability. Overall, our results suggest that such circulation-based statistical downscaling has the potential to improve our understanding towards distinct features of the regional-scale precipitation across the upper and lower Indus basin. Additionally, such understanding should help to assess the response of this complex, data-scarce, and climate-sensitive river basin amid future climatic changes, to serve communal and scientific interests.

54 ENVIRONMENTAL SCIENCES↗

Exceptionally stable preindustrial sea level inferred from the western Mediterranean Sea

An accurate record of preindustrial (pre-1900 CE) sea level is necessary to contextualize modern global mean sea level (GMSL) rise with respect to natural variability. Precisely dated phreatic overgrowths on speleothems (POS) provide detailed rates of Late Holocene sea-level rise in Mallorca. Statistical analysis indicates that sea level rose locally by 0.12 to 0.31 m (95% confidence) from 3.26 to 2.84 thousand years (ka) ago (2σ) and remained within 0.08 m (95% confidence) of preindustrial levels from 2.84 ka to 1900 CE. This sea-level history is consistent with glacial isostatic adjustment models adopting relatively weak upper mantle viscosities of ~10 20 Pa s. There is virtual certainty (>0.999 probability) that the average GMSL rise since 1900 CE has exceeded even the high average rate of sea-level rise between 3.26 and 2.84 ka inferred from the POS record. We conclude that modern GMSL rise is anomalous relative to any natural variability in ice volumes over the past 4000 years.

54 ENVIRONMENTAL SCIENCES↗