Inside the microbial black box: a redox-centric framework for deciphering microbial metabolism
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RAS is the most frequently mutated oncogene in cancer. RAS proteins show high sequence similarities in their G-domains but are significantly different in their C-terminal hypervariable regions (HVR). These regions interact with the cell membrane via lipid anchors that result from posttranslational modifications (PTM) of cysteine residues. KRAS4b is unique as it has only one cysteine that undergoes PTM, C185. Small molecule covalent modification of C185 would block any form of prenylation and subsequently inhibit attachment of KRAS4b to the cell membrane, blocking its biological activity. We translated this concept to the discovery and development of disulfide tethering screen hits into irreversible covalent modifiers of C185. These compounds inhibited proliferation of KRAS4b-driven mouse embryonic fibroblasts, but not cells driven by N-myristoylated KRAS4b that harbor a C185S mutation and are not dependent on C185 prenylation. Top–down proteomics was used to confirm target engagement in cells. These compounds bind in a pocket formed when the HVR folds back between helix 3 and 4 in the G-domain (HVR-α3-α4). This interaction can happen in the absence of small molecules as predicted by molecular dynamics simulations and is stabilized in the presence of C185 binders as confirmed by small-angle X-ray scattering and solution NMR. NOESY-HSQC, an NMR approach that measures internuclear distances of 6 Å or less, and structure analysis identified the critical residues and interactions that define the HVR-α3-α4 pocket. Further development of compounds that bind to this pocket could be the basis of a new approach to targeting KRAS cancers.
Protocol optimization is critical in Computed Tomography (CT) for achieving desired diagnostic image quality while minimizing radiation dose. Due to the inter-effect of influencing CT parameters, traditional optimization methods rely on the testing of exhaustive combinations of these parameters. This poses a notable limitation due to the impracticality of exhaustive parameter testing. This study introduces a novel methodology leveraging Virtual Imaging Trials (VITs) and reinforcement learning to more efficiently optimize CT protocols. Computational phantoms with liver lesions were imaged using a validated CT simulator and reconstructed with a novel CT reconstruction Toolkit. The optimization parameter space included tube voltage, tube current, reconstruction kernel, slice thickness, and pixel size. The optimization process was done using a Proximal Policy Optimization (PPO) agent which was trained to maximize the Detectability Index (d’) of the liver lesion for each reconstructed image. Results showed that our reinforcement learning approach found the absolute maximum d’ across the test cases while requiring 79.7% fewer steps compared to an exhaustive search, demonstrating both accuracy and computational efficiency, offering a efficient and robust framework for CT protocol optimization. The flexibility of the proposed technique allows for use of varying image quality metrics as the objective metric to maximize for. Our findings highlight the advantages of combining VIT and reinforcement learning for CT protocol management.
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This dataset contains telemetry data for the 520EV refuse trucks accessed through a Veracity data platform as provided by Peterbilt. The dataset contains driving data on both electric trucks used by SWS. Data were recorded at an hourly resolution and contain energy use data while driving and idling, distance driven (miles), and driving speed (miles per hour). This dataset also contains charging data on the fast charger in kilowatt-hours for each hour.
The presentation summarizes part of our work on the PrOMMiS project. It describes a systematic benchmarking activity of data-driven optimization algorithms for self-driving laboratories in critical materials manufacturing.
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Inverter-based resources are key components in modern power systems, but accurately modeling their complex behavior can be challenging. Standard, generic converter models often oversimplify inverter dynamics, leading to significant errors in predicting performance. In this work, we compare several data-driven machine learning (ML) approaches for inverter modeling, performing experiments on power conversion systems, systematically varying input conditions, and recording the resulting voltages and currents. The ML models were then trained on this measured data to capture the inverter's dynamic response and to predict the inverter's output current. A performance comparison between the four ML models under study is conducted, laying the foundation for future work on hardware implementation for real-time inference.
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This paper presents a systematic framework to tune a generic IBR EMT model to match with an OEM provided balckbox inverter model based on the fault current responses. The key learnings and findings are summarized as follows: The tunable key parameters include inner control loops and current limiters to align the fault current magnitude, sequence content, and phase trajectories with the OEM models across diverse fault type and locations. The tuned model's fidelity is validated through comparative analysis with an OEM blackbox model, assessing both the fault current response and the responses of multiple relay elements. The results demonstrate the tuned generic model can trigger relay decision logic that is identical or near identical to that of the OEM model, thus generating very good match model for fault studies.
Liquan program designed to analyze liquid propellant rocket engine static firing data - avoiding blackbox computer programs
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The implementation of both sequential and batch methods of estimation on IMP-16 microprocessors was investigated. Simulated data was used from a tracking and data relay satellite whose target satellite was the Solar Maximum Mission. An interesting feature of the hardware was the use of two interconnected IMP-16's. Some preliminary results from the study, as well as the difficulties and advantages in the use of microprocessors, are presented.
On the basis of early estimates of the Shuttle induced environment, Scialdone (1979) concluded that in the vicinity of the cargo, the cargo would have the largest influence on the environment. As a contamination control device, realtime monitors can indicate safe operational periods for sensitive attached payloads. It was, therefore, decided to develop the OSS-1/Contamination Monitor Package (CMP) experiment which was seen as a forerunner of an operational monitor. A description of the CMP is provided, taking into account four actively temperature controlled quartz crystal microbalances (TQCM). The TQCM temperatures could be varied from -60 C to +80 C. The sensor consisted of a matched pair of quartz crystals. The crystals were designated as a sensor and reference crystal. Results obtained during the STS-3 mission are discussed. These results show the feasibility and advantages of a small real-time contamination monitor.
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New laser cavity configuration efficiently couples solar radiation to laser mode volume. Lasing output powers of approximately 300 mW achieved for durations of 150 ms. New system allows lasing at substantially lower solar simulator intensities (150 Suns) and much longer laser gain lengths (60 cm).