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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 289 records · Page 16

Self-assembly and condensation of intermolecular poly(UG) RNA quadruplexes

Abstract Poly(UG) or ‘pUG’ dinucleotide repeats are highly abundant sequences in eukaryotic RNAs. In Caenorhabditis elegans, pUGs are added to RNA 3′ ends to direct gene silencing within Mutator foci, a germ granule condensate. Here, we show that pUG RNAs efficiently self-assemble into gel condensates through quadruplex (G4) interactions. Short pUG sequences form right-handed intermolecular G4s (pUG G4s), while longer pUGs form left-handed intramolecular G4s (pUG folds). We determined a 1.05 Å crystal structure of an intermolecular pUG G4, which reveals an eight stranded G4 dimer involving 48 nucleotides, 7 different G and U quartet conformations, 7 coordinated potassium ions, 8 sodium ions and a buried water molecule. A comparison of the intermolecular pUG G4 and intramolecular pUG fold structures provides insights into the molecular basis for G4 handedness and illustrates how a simple dinucleotide repeat sequence can form complex structures with diverse topologies.

Biochemistry & Molecular Biology↗

Binding Free Energy Analysis of Colicin D, E3 and E8 to Their Respective Cognate Immunity Proteins Using Computational Simulations

Colicins are antimicrobial proteins produced by bacteria for the purpose of destroying neighboring bacteria. Colicin activity is neutralized by a specific cognate immunity protein in order to protect the host. This study investigates the structural and binding mechanisms underlying the interaction of colicin-D, -E3 and -E8 to their respective immunity proteins (ImD, Im3 and Im8) using structure prediction, molecular dynamics (MD) simulations and MM-PBSA approach of free energy calculations. High-confidence colicin-immunity (Col-Im) complex structures predicted using AlphaFold2 were subjected to MD simulations of 150 ns with GROMACS and were analyzed for the binding free energy calculation using gmx_MMPBSA. Results showed that the complex of Col_E3-Im3 exhibited the most favorable binding free energy, driven by strong van der Waals and electrostatic interactions. Col_D-ImD and Col_E8-Im8 also showed the favorable binding. Electrostatics and hydrogen bonding emerged as a key factor driving binding and stability, while polar solvation acted as a destabilizing factor across all systems. These outcomes provide an understanding of the molecular mechanisms of Col-Im systems, with potential applications for developing natural antimicrobials for food safety.

Biochemistry & Molecular Biology↗

Large Space Shuttle Flight Experiment

It appears practical to challenge the Orbiter DAP with a large, attached structure. The definition of this capability is a fundamental step in the development of nearly all large space systems currently under consideration. Experiment features may be incorporated that apply to control systems for large space systems such as modal damping devices. In a relatively simple deployable structure, the correlation of flight test results with ground test and analysis should provide a basis for extrapolation to more complex structures. Initial experiment concepts will provide a starting point for the examination of antenna feed mast requirements with the objective changing the design to produce a representative test article. Correlation of construction operations with ground simulations will provide for better task and time-line definition. EVA needs to be a direct benefit to the conduct of the experiment. Early consideration of safety issues is a precaution against defining an unacceptable experiment concept. Integration of many objectives seems feasible and is generally perceived as the only way to justify a relatively expensive experiment.

Jenkins, L. M.↗

Scalable Nanoimprint Manufacturing of Functional Multilayer Metasurface Devices

Optical metasurfaces, consisting of subwavelength-scale meta-atom arrays, hold great promise of overcoming the fundamental limitations of conventional optics. Due to their structural complexity, metasurfaces usually require high-resolution yet slow and expensive fabrication processes. Here, using a metasurface polarimetric imaging device as an example, the photonic structures and the Nanoimprint lithography (NIL) processes are designed, creating two separate NIL molds over a patterning area of > 20 mm2 with designed Moiré alignment markers by electron-beam writing, and further subsequently integrate silicon and aluminum metasurface structures on a chip. Uniquely, the silicon and aluminum metasurfaces are fabricated by using the nanolithography and 3D pattern-transfer capabilities of NIL, respectively, achieving nanometer-scale linewidth uniformity, sub-200 nm translational overlay accuracy, and <0.017 rotational alignment error while significantly reducing fabrication complexity and surface roughness. Here, the micro-sized multilayer metasurfaces have high circular polarization extinction ratios as large as ≈20 and ≈80 in blue and red wavelengths. Further, the metasurface chip-integrated CMOS imager demonstrates high accuracy in broad-band, full Stokes parameter analysis in the visible wavelength ranges and single-shot polarimetric imaging. This novel, NIL-based, multilayered nanomanufacturing approach is applicable to the scalable production of large-area functional structures for ultra-compact optic, electronic, and quantum devices.

36 MATERIALS SCIENCE↗

Matrix Perturbation Techniques in Structural Dynamics

Matrix perturbation are developed techniques which can be used in the dynamical analysis of structures where the range of numerical values in the matrices extreme or where the nature of the damping matrix requires that complex valued eigenvalues and eigenvectors be used. The techniques can be advantageously used in a variety of fields such as earthquake engineering, ocean engineering, aerospace engineering and other fields concerned with the dynamical analysis of large complex structures or systems of second order differential equations. A number of simple examples are included to illustrate the techniques.

Caughey, T. K.↗

Structural reliability methods: Code development status

The Probabilistic Structures Analysis Method (PSAM) program integrates state of the art probabilistic algorithms with structural analysis methods in order to quantify the behavior of Space Shuttle Main Engine structures subject to uncertain loadings, boundary conditions, material parameters, and geometric conditions. An advanced, efficient probabilistic structural analysis software program, NESSUS (Numerical Evaluation of Stochastic Structures Under Stress) was developed as a deliverable. NESSUS contains a number of integrated software components to perform probabilistic analysis of complex structures. A nonlinear finite element module NESSUS/FEM is used to model the structure and obtain structural sensitivities. Some of the capabilities of NESSUS/FEM are shown. A Fast Probability Integration module NESSUS/FPI estimates the probability given the structural sensitivities. A driver module, PFEM, couples the FEM and FPI. NESSUS, version 5.0, addresses component reliability, resistance, and risk.

Millwater, Harry R.↗

Crystal growth and crystallography

Selected topics that may be of interest for both crystal-structure and crystal-growth communities are overviewed. The growth of protein crystals, along with that of some other compounds, is one of the topics, and recent insights into related phenomena are considered as examples of applications of general principles. The relationship between crystal growth shape and structure is reviewed and an attempt to introduce semiquantitative characterization of binding for proteins is made. The concept of kinks for complex structures is briefly discussed. Even at sufficiently low supersaturations, the fluctuation of steps may not be sufficient to implement the Gibbs-Thomson law if the kink density is low enough. Subsurface ordering of liquids and growth of rough interfaces from melts is discussed. Crystals growing in microgravity from solution should be more perfect if they preferentially trap stress-inducing impurities, thus creating an impurity-depleted zone around themselves. Evidently, such a zone is developed only around the crystals growing in the absence of convection. Under terrestrial conditions, the self-purified depleted zone is destroyed by convection, the crystal traps more impurity and grows stressed. The stress relief causes mosaicity. In systems containing stress-inducing but poorly trapped impurities, the crystals grown in the absence of convection should be worse than those of their terrestrial counterparts.

Review, Tutorial↗

Parallel algorithms and archtectures for computational structural mechanics

The determination of the fundamental (lowest) natural vibration frequencies and associated mode shapes is a key step used to uncover and correct potential failures or problem areas in most complex structures. However, the computation time taken by finite element codes to evaluate these natural frequencies is significant, often the most computationally intensive part of structural analysis calculations. There is continuing need to reduce this computation time. This study addresses this need by developing methods for parallel computation.

Patrick, Merrell↗

Cirrus structure and radiative parameters from airborne lidar and spectral radiometer observations - The 28 October 1986 FIRE study

A description is presented of cirrus based on results from a FIRE observation flight in central Wisconsin on October 28, 1986. Cirrus structure and radiative parameters as determined by the ER-2 lidar and imaging spectral radiometers are presented. From the lidar observations a complex structure was shown with differing cloud layers extending over six kilometers of altitude range. Both thin and dense cirrus layers were present and mixed phase clouds were found at lower altitudes. As indicated by the cloud structure, precipitation of crystals from high, but vertically thin, layers produces a significant fraction of the lower cirrus. Multiple layers should be considered as normal for cirrus formations. It is noted that the cloud height is an important factor for satellite cloud retrievals and cloud climatology.

Spinhirne, James D.↗

An instability in planetary rings due to ballistic transport

Ballistic transport in planetary rings is the net radial transport of mass and angular momentum due to exchanges of meteoroid impact ejecta between neighboring ring regions. The detailed linear stability analysis in this paper demonstrates that ballistic transport causes wavelike disturbances to grow and propagate in an otherwise uniform ring. The growth is strongest for intermediate values of the normal ring optical depth tau = 0.1 to 1.0 and goes to zero as tau approaches 0 and tau approaches infinity. For nominal values of various physical parameters, the minimum e-folding time is approximately 10(exp 5) years for tau approximately 0.4. The direction of propagation is opposite to the sense of any asymmetry that may exist in the ejecta direction distribution (inward for prograde ejecta and outward for retrograde ejecta). The additional effect of viscous transport tends to damp wavelike perturbations strongly at short wavelengths and at high values of tau. The quantitative agreement between this analytic work and numerical simulations reported elsewhere is generally quite good. As applied to Saturn's rings, the results in this paper strengthen the earlier conclusion from numerical calculations that the 100-km structure in the inner B Ring is caused by ballistic transport. However, it is also clear that ballistic transport cannot produce the complex structure seen in the outer two-thirds of the B Ring where tau greater than or approximately 1.5. Wavelike structures in the C Ring might also be attributed to ballistic transport; but this requires further study.

Durisen, Richard H.↗

Stress analysis of gas turbine engine structures using the boundary element method

The theory of the boundary element method is briefly reviewed with particular reference to the feasibility of elastic and inelastic three-dimensional stress analysis of complex structures characteristic of gas turbine engine components. Particular requirements of gas turbine analysis are defined, and examples of the use of a boundary element code designed for the three-dimensional stress analysis of turbine components are presented. It is shown that the general-purpose boundary element code can accurately and efficiently analyze many of the gas turbine engine structures.

Wilson, R. B.↗

Reconciling Heliostat and Solar Panel Wind Loads To Develop a Reduced-Order Model for Heliostat Wind Loads

This work has been carried out as part of the HelioCon Field Deployment subtask, with the aim to distill published literature in papers and standards on heliostat and solar panel wind loads to develop a reduced order model for heliostat wind loads. It is intended to be understood and applied by structural engineers and heliostat designers as inputs to determine wind loads on heliostats due to the underlying derivations and factors that influence the complex structural dynamics and wind-induced behavior of heliostats.

14 SOLAR ENERGY↗

Volumetric visualization of 3D data

In recent years, there has been a rapid growth in the ability to obtain detailed data on large complex structures in three dimensions. This development occurred first in the medical field, with CAT (computer aided tomography) scans and now magnetic resonance imaging, and in seismological exploration. With the advances in supercomputing and computational fluid dynamics, and in experimental techniques in fluid dynamics, there is now the ability to produce similar large data fields representing 3D structures and phenomena in these disciplines. These developments have produced a situation in which currently there is access to data which is too complex to be understood using the tools available for data reduction and presentation. Researchers in these areas are becoming limited by their ability to visualize and comprehend the 3D systems they are measuring and simulating.

Russell, Gregory↗

The 3rd Annual Controlled Structures Technology Symposium

Viewgraphs of presentations at the Controlled Structures Technology (CST) MIT Space Engineering Research Center 3rd Annual Symposium are included. Topics covered include optical interferometer testbed; active impedence matching of complex structural systems; application of CST to adaptive optics; middeck 0-G dynamics Experiment (MODE); inhibiting multiple mode vibration in controlled flexible systems; the middeck active control experiment (MACE); robust control for uncertain structures; cost averaging techniques for robust structural control; and intelligent structures technology.

Source record↗

Reliable Bonding of Composite Laminates Using Reflowable Epoxy Resins

Epoxy matrix composites assembled with adhesives maximize the performance of aerospace structures, but the possibility of forming weak bonds requires the installation of redundant fasteners, which add weight and manufacturing cost. Co-cured joints (e.g. unitized composite structures) are immune to weak bonds because the uncured resin undergoes diffusion and mixing through the joint. A means of co-curing complex structures may reduce the need for redundant fasteners in bondlines. To this end, NASA started the AERoBOND project to develop novel joining materials to enable a “secondary-co-cure” assembly process. Aerospace epoxy resin systems reformulated with offset stoichiometry prevented the resin from advancing beyond the gel point during a conventional autoclave cure cycle up to 180 °C. The offset resins were applied to the joining surfaces of laminate preforms as prepreg. Two surfaces with complimentary offset resins were joined using conventional secondary bonding techniques. Preliminary efforts have indicated that the resulting joint has no discernable interface and appears as a conventional co-cured laminate under optical magnification. This report will discuss the initial work performed regarding formulation of the epoxy resin system using calorimetry, rheology, and mechanical testing.

Palmieri, Frank L.↗

Electronic structure of the honeycomb iridate Cu 2 ⁢IrO 3 at high pressure

Cu 2 IrO 3 has attracted recent interest due to its proximity to the Kitaev quantum spin liquid state and the complex structural response observed at high pressures. We use x-ray spectroscopy and scattering as well as electrical transport techniques to unveil the electronic structure of Cu 2 IrO 3 at ambient and high pressures. Despite featuring a Ir 4+ J eff = 1/2 state at ambient pressure, Ir L 3 -edge resonant inelastic x-ray scattering reveals broadened electronic excitations that point to the importance of Ir 5d-Cu 3d interaction. High pressure first drives an Ir-Ir dimer state with collapsed < L · S > and < L z >/< S z >, signaling the formation of 5d molecular orbitals. A novel Cu → Ir charge transfer is observed above 30 GPa at low temperatures, leading to an approximate Ir 3+ and Cu 1.5+ valence, with persistent insulating electrical transport seemingly driven by charge segregation of Cu 1+ /Cu 2+ ions into distinct sites. Concomitant x-ray spectroscopy and diffraction measurements through different thermodynamic paths demonstrate a strong electron-lattice coupling, with J eff = 1/2 and Ir 3+ /Cu 1.5+ electronic states occurring only in phases 1 and 5, respectively. Remarkably, the charge-transfer state can only be reached if Cu 2 IrO 3 is pressurized at low temperature, suggesting that phonons play an important role in the inhibiting this phase. Furthermore, these results point to the choice of thermodynamic path across interplanar collapse transition as a key parameter to access novel states in intercalated iridates.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Estimating Design Loads in Coupled Vibrating Structures

Approximate spectral analysis faster and less expensive than transient analysis. Method of vibration analysis combines separate modes of spacecraft and launcher to determine approximate conditions for resonance. Useful for analysis of any complex structure made up of substructures not coupled too closely; however important to note, method includes effect of dynamic impedance between launcher and payload.

Trubert, M. R.↗

Vibration suppression in a large space structure

The Yale University Center for Systems Science and the NASA Johnson Space Center collaborated in a study of vibration suppression in a large space structure during the period January 1985 to August 1987. The research proposal submitted by the Center to NASA concerned disturbance isolation in flexible space structures. The general objective of the proposal was to create within the Center a critical mass of expertise on problems related to the dynamics and control of large flexible space structures. A specific objective was to formulate both passive and active control strategies for the disturbance isolation problem. Both objectives were achieved during the period of the contract. While an extensive literature exists on the control of flexible space structures, it is generally acknowledged that many important questions remain open at even a fundamental level. Hence, instead of studying grossly simplified models of complex structural systems, it was decided as a first step to confine attention to detailed and thorough analyses of simple structures.

Narendra, Kumpati S.↗