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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 289 records · Page 16
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

How Representative Are Uncrewed Aircraft System Measurements of the Convective Boundary Layer?

Abstract Uncrewed aircraft systems (UAS) demonstrate significant potential for filling data gaps in the atmospheric boundary layer. However, the extent to which UAS observations—typically vertical profiles taken over 15 min—are representative of the boundary layer as a whole remains poorly characterized. Using large eddy simulations (LES) of the daytime convective boundary layer (CBL), we quantify random errors in UAS measurements that occur due to insufficient statistical convergence of the time average to the true ensemble mean. Random errors in first‐order moments increase as the CBL becomes increasingly unstable, and are largest near the surface for most quantities. Errors are on the order of 2–6 m for wind speed, 15–60 for wind direction, 0.2–3 K for potential temperature, and 0.1–1 g for specific humidity, with errors in turbulent fluxes on the order of 50%–100%. Sampling strategies that mitigate random errors are discussed in light of our results.

Greene, Brian R. [Now at Verisk Extreme Event Solu↗
DOE OSTI2025

Improving seasonal precipitation forecasts in the Western United States through statistical downscaling

Abstract Seasonal precipitation forecasts in the western United States are critical resources for water resource management, especially during winter. While current seasonal forecasting systems provide monthly precipitation forecasts operationally, their coarse resolution limits their effectiveness in capturing the localized precipitation patterns and snowpack conditions essential for water resource managers in the mountainous regions. Here, analog statistical downscaling is demonstrated as an effective approach to enhance the spatial resolution of operational seasonal forecasts provided by the North American Multi-Model Ensemble. Downscaling was performed by building an analog ‘library’, in which corresponding model forecasts and observed values during the training period were stored. In the testing period, unseen model forecasts referenced the closest historical forecast from the analog library and applied the corresponding observational value for each point. This analysis indicates that downscaled products can capture localized features more accurately than the original coarse resolution forecasts, reducing forecast error across the western United States. Moreover, downscaling individual ensemble members—rather than downscaling the ensemble mean—further reduces forecasting error for their multi-model ensemble mean products. The greatest error reductions in the downscaled product, measured by root mean squared error (RMSE), were observed at low to mid-elevations (500–2000 meters), with 50%–70% improvement relative to the original forecasts. In the higher elevations (2000 meters and above), changes in RMSE relative to the original forecast were limited to 10%–30% improvements. The improvement is more substantial for forecast systems with 10 ensemble members compared to that with 4 members, but this relationship does not hold for the system with 24 ensemble members. These findings show that analog statistical downscaling can effectively address the spatial limitations of seasonal precipitation forecasts with minimal computational cost, providing a valuable framework for enhancing coarse resolution forecasting products while providing insights into the timing of ensemble mean calculations during the downscaling process.

Vernon, B. (ORCID:0009000891670689)↗
DOE OSTI2022

Non-Parametric Statistical Analysis of Current Waveforms through Power System Sensors

The protection, control, and monitoring of the power grid is not possible without accurate measurement devices. As the percentage of renewable energy sources penetrating the existing grid infrastructure increases, so do uncertainties surrounding their effects on the everyday operation of the power system. Many of these devices are sources of high-frequency transients. These transients may be useful for identifying certain events or behaviors otherwise not seen in traditional analysis techniques. Therefore, the ability of sensors to accurately capture these phenomena is paramount. In this work, two commercial-grade power system distribution sensors are investigated in terms of their ability to replicate high-frequency phenomena by studying their responses to three events: a current inrush, a microgrid “close-in”, and a fault on the terminals of a wind turbine. Kernel density estimation is used to derive the non-parametric probability density functions of these error distributions and their adequateness is quantified utilizing the commonly used root mean square error (RMSE) metric. It is demonstrated that both sensors exhibit characteristics in the high harmonic range that go against the assumption that measurement error is normally distributed.

47 OTHER INSTRUMENTATION↗
DOE OSTI2020

Raytracing the long trace profiler

The optical design of the Long Trace Profiler optical system is explored with a commercial raytrace program, Zemax OpticStudio™ (ZOS)1, with the intent of finding and correcting sources of systematic error. ZOS provides both geometric raytracing tools and physical optics Gaussian beam propagation and diffraction image calculation tools, and two design modes, sequential component (SC) and non-sequential component (NSC) that are optimized for different aspects of the design process. The original LTP-II system employs a singlet lens with a 1250 mm focal length. It is optimized to provide minimum distortion over a surface slope angle range of ±5 mrad. Using the ZOS tools, we are able to simulate ghost rays that produce distortion in the beam spot image and can minimize the distortion by deliberate misalignment of the beamsplitter (BS) components. Unfortunately, the reference beam is compromised because of the component tilts. The most recent LTP500 system design simplifies the optical system and makes the reference beam usable again, even with misalignment of the polarizing beamsplitter (PBS). Two lenses are designed for the LTP500 - a cemented doublet that has been fabricated, and a singlet with one aspheric surface. Both have focal distances of 500 mm with an expanded angular measurement range of ±10 mrad. The aspheric singlet provides superior performance. ZOS allows the import of wavefront measurement data produced by commercial interferometer software. We apply the wavefront error measurement from the cemented doublet to the model to show that the 19nm RMS wavefront error needs to be improved by at least a factor of ten in order to reduce the systematic error to a level that will allow the LTP to approach its design limit of a few tens of nanoradians.

Takacs, Peter Z.↗
DOE OSTI2022

Perturbation theory models for LSST-era galaxy clustering: Tests with subpercent mock catalog measurements in Fourier and configuration space

Here, we analyze the clustering of galaxies using the z = 1.006 snapshot of the CosmoDC2 simulation, a high-fidelity synthetic galaxy catalog designed to validate analysis methods for the Vera C. Rubin Observatory Legacy Survey of Space and Time (LSST). We present sub-percent measurements of the galaxy auto-correlation and galaxy-dark matter cross correlations in Fourier space and configuration space for a magnitude-limited galaxy sample. At these levels of precision, the statistical errors of the measurement are comparable to the systematic effects present in the simulation and measurement procedure; nevertheless, using a hybrid-PT model, we are able to model non-linear galaxy bias with 0.5% precision up to scales of k max = 0.5 h/Mpc and r min = 4 Mpc/h. While the linear bias parameter is measured with 0.01% precision, other bias parameters are determined with considerably weaker constraints and sometimes bimodal posterior distributions. We compare our fiducial model with lower dimensional models where the higher-order bias parameters are fixed at their co-evolution values and find that leaving these parameters free provides significant improvements in our ability to model small scale information. We also compare bias parameters for galaxy samples defined using different magnitude bands and find agreement between samples containing equal numbers of galaxies. Finally, we compare bias parameters between Fourier space and configuration space and find moderate to significant tension between the two approaches. Although our model is often unable to fit the CosmoDC2 galaxy samples within the 0.1% precision of our measurements, our results suggest that the hybrid-PT model used in this analysis is capable of modeling non-linear galaxy bias within the percent level precision needed for upcoming galaxy surveys.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Detecting macroevolutionary genotype–phenotype associations using error-corrected rates of protein convergence

On macroevolutionary timescales, extensive mutations and phylogenetic uncertainty mask the signals of genotype–phenotype associations underlying convergent evolution. To overcome this problem, we extended the widely used framework of non-synonymous to synonymous substitution rate ratios and developed the novel metric ω C , which measures the error-corrected convergence rate of protein evolution. While ω C distinguishes natural selection from genetic noise and phylogenetic errors in simulation and real examples, its accuracy allows an exploratory genome-wide search of adaptive molecular convergence without phenotypic hypothesis or candidate genes. Using gene expression data, we explored over 20 million branch combinations in vertebrate genes and identified the joint convergence of expression patterns and protein sequences with amino acid substitutions in functionally important sites, providing hypotheses on undiscovered phenotypes. We further extended our method with a heuristic algorithm to detect highly repetitive convergence among computationally non-trivial higher-order phylogenetic combinations. Our approach allows bidirectional searches for genotype–phenotype associations, even in lineages that diverged for hundreds of millions of years.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Molecular Symmetry in VQE: A Dual Approach for Trapped-Ion Simulations of Benzene

Understanding complex chemical systems—such as biomolecules, catalysts, and novel materials—is a central goal of quantum simulations. Near-term strategies hinge on the use of variational quantum eigensolver (VQE) algorithms combined with a suitable ansatz. However, straightforward application of many chemically-inspired ansatze yields prohibitively deep circuits. In this work, we employ several circuit optimization methods tailored for trapped-ion quantum devices to enhance the feasibility of intricate chemical simulations. The techniques aim to lessen the depth of the unitary coupled cluster with singles and doubles (uCCSD) ansatz's circuit compilation, a considerable challenge on current noisy quantum devices. Furthermore, we use symmetry-inspired classical post-selection methods to further refine the outcomes and minimize errors in energy measurements, without adding quantum overhead. Our strategies encompass optimal mapping from orbital to qubit, term reordering to minimize entangling gates, and the exploitation of molecular spin and point group symmetry to eliminate redundant parameters. The inclusion of error mitigation via post-selection based on known molecular symmetries improves the results to near milli-Hartree accuracy. These methods, when applied to a benzene molecule simulation, enabled the construction of an 8-qubit circuit with 69 two-qubit entangling operations, pushing the limits for variational quantum eigensolver (VQE) circuits executed on quantum hardware to date. 1 1 This manuscript has been authored in part by UT-Battelle, LLC, under contract DE-AC05-000R22725 with the US Department of Energy (DOE). The publisher acknowledges the US government license to provide public access under the DOE Public Access Plan(https://energy.gov/doe-public-access-plan).

Goings, Joshua↗
DOE OSTI2021

High-Speed X-Ray Stereo Digital Image Correlation in a Shock Tube

X-ray stereo digital image correlation (DIC) measurements were performed at 10 kHz on the internal surface of a jointed structure in a shock tube at a shock Mach number of 1.42 and compared with optical stereo DIC measurements on the outer, visible surface of the structure. The shock tube environment introduces temperature and density gradients in the gas through which the structure was imaged, resulting in spatial and temporal index of refraction variations. These variations cause bias errors in optical DIC measurements due to beam-steering but have minimal influence on x-ray DIC measurements. These results demonstrate the utility of time-resolved x-ray DIC measurements in complicated environments where optical measurements suffer severe errors and/or are precluded by lack of optical access.

42 ENGINEERING↗
DOE OSTI2022

Test of nuclear decay rate variation due to an antineutrino flux

Unexplained variations of the decay rate parameter for weak interaction decays such as β ± decay, electron capture, as well as strong interaction α decay have been reported. Because these variations have been presented by a number of groups, at various locations, using various types of detectors, different isotopes, and over extended periods of time, some researchers have interpreted the source of these variations as not from ambient environmental factors such as temperature, pressure, and humidity but via an unexplained fundamental interaction. The state of decay rate parameter variations experiments is reviewed, and the reported results are placed into a common comparable context by defining a phenomenological cross section. After that we make decay parameter measurements as a function of time at the level of 10 -5 in the presences of an antineutrino flux with an on-off cycle time of ≈ 30 days. This level of precision requires a detailed understanding of both systematic and statistical errors; otherwise, systematic errors in the measurement may mimic the decay events of fundamental interactions. The experiment searched for variation of the $^{54}_{25}$Mn, e - capture decay rate parameter and $^{137}_{55}$Cs, β - decay rate parameter both to a level of precision of 1 part in ≈10 5 by comparing the difference between the decay rate in the presence of an antineutrino flux ≈ 3 x 10 12 $\bar{ν}$ cm -2 s -1 and no flux measurements. The experiment was located 6.53 m from the reactor core of the High Flux Isotope Reactor at the Oak Ridge National Laboratory. Two weak interaction decays, one via electron capture and the other via β - decay, were selected because the final state and the time reverse state each contain a neutrino and antineutrino, covering arguments that the antineutrino flux may interact differently or not at all in one of the cases. The $\gamma$ spectra from both decays were collected and analyzed independently. The measured variation in the decay rate parameters are found to be δλ/λ =(0.034 ± 1.38) x10 -5 for $^{54}_{25}$Mn and δλ/λ =(0.67±1.56) x10 -5 for $^{137}_{55}$Cs. These results are consistent with no measurable decay rate parameter variation due to an antineutrino flux, yielding a 68% confidence level upper limit sensitivity for $^{54}_{25}$Mn δλ/λ ≤ 1.31 x 10 -5 or σ ≤ 1.29 x10 -25 cm 2 in cross section and for $^{137}_{55}$Cs δλ/λ ≤ 2.23 x 10 -5 or σ ≤ 5.69 x10 -27 cm 2 . The cross-section upper limit obtained in these null or no observable effect measurements are ≈ 10 4 times more sensitive than past experiments reporting positive results in 54 Mn and 137 Cs. . .

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Conserving Land–Atmosphere Synthesis Suite (CLASS)

Accurate estimates of terrestrial water and energy cycle components are needed to better understand climate processes and improve models’ ability to simulate future change. Various observational estimates are available for the individual budget terms; however, these typically show inconsistencies when combined in a budget. In this work, a Conserving Land–Atmosphere Synthesis Suite (CLASS) of estimates of simultaneously balanced surface water and energy budget components is developed. Individual CLASS variable datasets, where possible, 1) combine a range of existing variable product estimates, and hence overcome the limitations of estimates from a single source; 2) are observationally constrained with in situ measurements; 3) have uncertainty estimates that are consistent with their agreement with in situ observations; and 4) are consistent with each other by being able to solve the water and energy budgets simultaneously. First, available datasets of a budget variable are merged by implementing a weighting method that accounts both for the ability of datasets to match in situ measurements and the error covariance between datasets. Then, the budget terms are adjusted by applying an objective variational data assimilation technique (DAT) that enforces the simultaneous closure of the surface water and energy budgets linked through the equivalence of evapotranspiration and latent heat. Comparing component estimates before and after applying the DAT against in situ measurements of energy fluxes and streamflow showed that modified estimates agree better with in situ observations across various metrics, but also revealed some inconsistencies between water budget terms in June over the higher latitudes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

First estimation of high-resolution solar photovoltaic resource maps over China with Fengyun-4A satellite and machine learning

Fengyun-4A (FY-4A), which is the latest-generation Chinese geostationary meteorological satellite, measures solar reflection and thermal emission with high temporal, spatial, and spectral resolutions. It is expected to be highly beneficial for solar resource assessment and forecasting in China. This study is the first to estimate, using FY-4A and a random forest model, the global horizontal irradiance (GHI) at a 4-km–15-min spatio-temporal resolution over China, as a means to arrive at a solar photovoltaic (PV) resource map. In terms of GHI estimates, the root mean square error and mean bias error between hourly measured and retrieved values are 147.02 (35.2%), –5.64 W/m 2 (–1.4%), respectively, whereas the values of daily estimates are 29.20 (18.0%), –2.97 W/m 2 (–1.3%). The retrieval accuracy is found much better for instances with solar zenith angles smaller than 60°. Relatively larger errors are found at locations in the Sichuan Basin and northeastern China, which can be attributed to bright surfaces and/or strong cloud transients. With the retrieved irradiance, PV resource is derived through a physical model chain. The annual mean PV resource map suggests that, over most of the west areas, the annual mean effective irradiance exceeds 1700 kWh/m 2 , with the highest value found in Tibet (around 2000 kWh/m 2 per annum). Eastern China has an annual effective irradiance of only 1300–1500 kWh/m 2 . In conclusion, the region with poorest solar resource is the Sichuan Basin (less than 1100 kWh/m 2 per annum).

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2023

𝐷-meson semileptonic decays to pseudoscalars from four-flavor lattice QCD

We present lattice-QCD calculations of the hadronic form factors for the semileptonic decays D → πℓν, D → Kℓν, and D s → Kℓν. Our calculation uses the highly improved staggered quark (HISQ) action for all valence and sea quarks and includes N f = 2 + 1 + 1 MILC ensembles with lattice spacings ranging from a ≈ 0.12 fm down to 0.042 fm. At most lattice spacings, an ensemble with physical-mass light quarks is included. The HISQ action allows all the quarks to be treated with the same relativistic light-quark action, allowing for nonperturbative renormalization using partial conservation of the vector current. We combine our results with experimental measurements of the differential decay rates to determine |V cd | D → π = 0.2238(11) Expt (15) QCD (04) EW (02) SIB [22] QED and |V cs | D → K = 0.9589 (23) Expt (40) QCD (15) EW (05) SIB [95] QED . This result for |V cd | is the most precise to date, with a lattice-QCD error that is, for the first time for the semileptonic extraction, at the same level as the experimental error. Using recent measurements from BES III, we also give the first-ever determination of |V cd | D s → K = 0.258(15) Expt (01) QCD [03] QED from D s → Klν. Our results also furnish new Standard Model calculations of the lepton flavor universality ratios $R$$^{D → π}_{μ/e}$ = 0.98671(17) QCD [500] QED , $R$$^{D → π}_{μ/e}$ = 0.97606(16) QCD [500] QED , and $R$$^{D → π}_{μ/e}$ = 0.98099(10) QCD [500] QED , which are consistent within 2σ with experimental measurements. Our extractions of |V cd | and |V cs |, when combined with a value for |V cb |, provide the most precise test of second-row Cabibbo-Kobayashi-Maskawa unitarity, finding agreement with unitarity at the level of one standard deviation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

A non-intrusive optical approach to characterize heliostats in utility-scale power tower plants: Flight path generation/optimization of unmanned aerial systems

A newly developed in situ non-intrusive optical (NIO) approach has been developed to survey various types of heliostat optical errors for a concentrating solar power (CSP) tower plant. To measure mirror surface slope error, facet canting error, and heliostat tracking error at a sub-milliradian accuracy, NIO requires several reflection images scanned over each individual heliostat. For a utility-scale plant that typically includes more than 10,000 heliostats, an unmanned aerial system (UAS) is crucial for efficient implementation of the NIO method. Here, we develop a flight path generation/optimization algorithm to plan more efficient UAS paths to collect NIO data over a utility-scale heliostat field. The algorithm considers NIO data requirements, all potential constraints, optimization within each subfield, and operational flexibility. Case studies are presented to illustrate the feasibility and robustness of the developed flight path algorithm. The path planning algorithm may also find applications elsewhere, such as drone-driven imaging under extreme conditions.

14 SOLAR ENERGY↗
DOE OSTI2020

Model independent comparison of supernova and strong lensing cosmography: Implications for the Hubble constant tension

We use supernovae measurements, calibrated by the local determination of the Hubble constant $H_0$ by SH0ES, to interpolate the distance-redshift relation using Gaussian process regression. We then predict, independent of the cosmological model, the distances that are measured with strong lensing time delays to test their mutual agreement. In this work we find excellent agreement between these predictions and the measurements. The agreement holds when we consider only the redshift dependence of the distance-redshift relation, independent of the value of $H_0$. Our results disfavor the possibility that lens mass modeling contributes a 10% bias or uncertainty in the strong lensing analysis, as suggested recently in the literature. In general our analysis strengthens the case that residual systematic errors in both measurements are below the level of the current discrepancy with the CMB determination of $H_0$, and supports the possibility of new physical phenomena on cosmological scales. With additional data our methodology can provide more stringent tests of unaccounted for systematics in the determinations of the distance-redshift relation in the late universe.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Geophysical and Environmental Monitoring Data, and Subsurface Flow Modelling Results for Chicken Bone Meadow, Mt. Snodgrass, Crested Butte, CO

This dataset includes geoelectrical monitoring data acquired between October 2021 and November 2022, soil moisture and temperature data, groundwater data obtained from borehole SNIB covering the period from June 2021 to September 2022, and hydrological modelling results. The data were acquired to investigate how variations in bedrock type and topography, and vegetation cover control subsurface flow dynamics. To provide insights into the subsurface flow dynamics and their controls, a monitoring transect was installed at the Chicken Bone Meadow, Mt. Snodgrass, Crested Butte, CO, measuring the spatio-temporal variations of soil moisture, soil and snow temperature, subsurface electrical resistivity variations, and groundwater dynamics. Field data are organized in a folder structure, with Electrical Resistivity Tomography (ERT) data being provided as one file per measurement, and data of the soil moisture and temperature sensors being provided as text files covering the entire monitoring period. The ‘Locations.csv’ file contains the location of all sensors, given in NAD83 – UTM Zone 13N. ERT monitoring data has been processed to filter data based on reciprocal errors (data with errors > 30% were removed), a linear error model was fitted to each survey, and to ensure a constant set of measurements for time-lapse inversion, filtered data were interpolated and assigned a 100% measurement error. Soil moisture and temperature data were acquired at 15 min intervals, and averaged to provide 1h data. Weather data and borehole data (groundwater depth, conductivity and temperature) were acquired at 30 min intervals, and are provided as daily measurements; all measurements are averaged, except of precipitation values, which are given as daily accumulation. The hydrological model was set up along the ERT monitoring transect, and net infiltration was used as surface boundary condition and derived from the weather data. Four different results are provided, (1) results for a parameterization using hydraulic permeability and porosity as derived from the ERT data through petrophysical relationships, and (2) three simplified model results, using 1 to 3 geological layers above the bedrock. Modelling was performed using PFLOTRAN, and for each model the PFLOTRAN input files are provided. The result files include weekly hydrological modelling results (e.g., saturation, velocities, pressures), as well as the model parameterization. The dataset additionally includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata; and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Measuring and modeling soil moisture and runoff at solar farms using a disconnected impervious surface approach

Abstract Ground‐mounted photovoltaic sites are often treated as impervious surfaces in stormwater permits. This ignores the pervious soils beneath and between solar arrays and leads to an overestimation of runoff. Our objective was to improve solar farm stormwater hydrology models by explicitly considering the disconnected impervious nature of solar design and site characteristics. Experimental sites established on utility scale solar farms in Colorado, Georgia, Minnesota, New York, and Oregon had perennial vegetative plantings with mean precipitation ranging from 40.6 to 124.5 cm, and soil texture ranging from loamy sand to clay. Soil moisture measurements were collected beneath arrays, under drip edges, and in the vegetated area between arrays at each site. Hydrus‐3D models for soil moisture and stormwater hydrology were developed that accounted for precipitation falling on solar panels, drip edge redistribution of rainfall, infiltration, and runoff in the pervious areas between solar arrays and beneath panels. Drip edge runoff averaged 3‐ to 10‐times incident precipitation at the New York and Minnesota sites, respectively. Root mean square error values between measured sub‐hourly soil moisture and predicted moisture for large measured single storm events averaged 0.029 across all five sites. Predicted runoff depths were strongly affected by precipitation depth, soil texture, soil profile depth, and soil bulk density. Runoff depths across the five experimental sites averaged 13%, 25%, and 45% of the 2‐, 10‐, and 100‐year design storm depths, clearly showing that these solar farms do not behave like impervious surfaces, but rather as disconnected impervious surfaces with substantial infiltration of runoff in the vegetated areas between and beneath solar arrays.

Agriculture↗
DOE OSTI2024

Towards optimal sensor placement for inverse problems in spaces of measures

The objective of this work is to quantify the reconstruction error in sparse inverse problems with measures and stochastic noise, motivated by optimal sensor placement. To be useful in this context, the error quantities must be explicit in the sensor configuration and robust with respect to the source, yet relatively easy to compute in practice, compared to a direct evaluation of the error by a large number of samples. In particular, we consider the identification of a measure consisting of an unknown linear combination of point sources from a finite number of measurements contaminated by Gaussian noise. The statistical framework for recovery relies on two main ingredients: first, a convex but non-smooth variational Tikhonov point estimator over the space of Radon measures and, second, a suitable mean-squared error based on its Hellinger–Kantorovich distance to the ground truth. To quantify the error, we employ a non-degenerate source condition as well as careful linearization arguments to derive a computable upper bound. This leads to asymptotically sharp error estimates in expectation that are explicit in the sensor configuration. Thus they can be used to estimate the expected reconstruction error for a given sensor configuration and guide the placement of sensors in sparse inverse problems.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Three-dimensional traction microscopy accounting for cell-induced matrix degradation

Tractions exerted by cells on the extracellular matrix (ECM) are critical in many important physiological and pathological processes such as embryonic morphogenesis, wound healing, and cancer metastasis. Three-dimensional Traction Microscopy (3DTM) is a tool to quantify cellular tractions by first measuring the displacement field in the ECM in response to these tractions, and then using this measurement to infer tractions. Most applications of 3DTM have assumed that the ECM has spatially-uniform mechanical properties, but cells secrete enzymes that can locally degrade the ECM. In this work, a novel computational method is developed to quantify both cellular tractions and ECM degradation. In particular, the ECM is modeled as a hyperelastic, Neo-Hookean solid, whose material parameters are corrupted by a single degradation parameter. The feasibility of determining both the traction and the degradation parameter is first demonstrated by showing the existence and uniqueness of the solution. An inverse problem is then formulated to determine the nodal values of the traction vector and the degradation parameter, with the objective of minimizing the difference between a predicted and measured displacement field, under the constraint that the predicted displacement field satisfies the equation of equilibrium. The inverse problem is solved by means of a gradient-based optimization approach, and the gradient is computed efficiently using appropriately derived adjoint fields. The computational method is validated in-silico using a geometrically realistic neuronal cell model and synthetic traction and degradation fields. It is found that the method accurately recovers both the traction and degradation fields. Moreover, it is found that neglecting ECM degradation can yield significant errors in traction measurements. Finally, our method can extend the range of context where tractions can be appropriately measured.

42 ENGINEERING↗