Molecular Coordination, Structure, and Stability of Metal-Polyphosphate Complexes Resolved by Molecu
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Park, Yeonsoo↗
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Alkyl Coordination in meso -(ONO) 2– Supported Uranium(IV) Complexes
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38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗
Photophysical properties of three-coordinate heteroleptic Cu( I ) β-diketiminate triarylphosphine complexes
A series of heteroleptic copper(I) β-diketiminate triarylphosphine complexes is reported, having the general formula Cu(R 1 NacNac R2 )(PPh X 3 ), where R 1 NacNac R2 is a substituted β-diketiminate and PPh X 3 is a triphenylphosphine derivative. A total of five different R 1 NacNac R2 ligands and three different triarylphosphines are used to assemble the nine complexes. Here, the syntheses, X-ray crystal structures, cyclic voltammograms, and UV–vis absorption spectra of all compounds are described. Whereas most of the compounds are weakly luminescent or only luminesce at 77 K, the four complexes with the more sterically encumbered β-diketiminate ligands, with methyl or isopropyl substituents at the 2- and 6-positions of the N-phenyl rings, exhibit weak room-temperature photoluminescence with peaks between 519 and 566 nm and long excited-state lifetimes in the range of 15–70 μs. The sterically encumbering substituents in this subset have subtle effects on the UV–vis absorption maximum, which red shifts slightly as the steric bulk increases, as well as significant effects on the photoluminescence lifetime, which is observed to increase as the steric bulk is augmented. Substituents on the triarylphosphine also influence the excited-state dynamics in the bulky complexes, with the more electron-rich tris(4-methoxyphenyl)phosphine (PPh OMe 3 ) giving longer-excited-state lifetimes compared to triphenylphosphine (PPh 3 ) when the same R 1 NacNac R2 ligand is used.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Assimilation of a Coordinated Fleet of Uncrewed Aircraft System Observations in Complex Terrain: EnKF System Design and Preliminary Assessment
Abstract Uncrewed aircraft system (UAS) observations collected during the 2018 Lower Atmospheric Process Studies at Elevation—a Remotely Piloted Aircraft Team Experiment (LAPSE-RATE) field campaign were assimilated into a high-resolution configuration of the Weather Research and Forecasting Model using an ensemble Kalman filter. The benefit of UAS observations was assessed for a terrain-driven (drainage and upvalley) flow event that occurred within Colorado’s San Luis Valley (SLV) using independent observations. The analysis and prediction of the strength, depth, and horizontal extent of drainage flow from the Saguache Canyon and the subsequent transition to upvalley and up-canyon flow were improved relative to that obtained both without data assimilation (benchmark) and when only surface observations were assimilated. Assimilation of UAS observations greatly improved the analyses of vertical variations in temperature, relative humidity, and winds at multiple locations in the northern portion of the SLV, with reductions in both bias and the root-mean-square error of roughly 40% for each variable relative to the benchmark run. Despite these noted improvements, some biases remain that were tied to measurement error and/or the impact of the boundary layer parameterization on vertically spreading the observations, both of which require further exploration. The results presented here highlight how observations obtained with a fleet of profiling UAS improve limited-area, high-resolution analyses and short-term forecasts in complex terrain.
54 ENVIRONMENTAL SCIENCES↗
Assimilation of a Coordinated Fleet of Uncrewed Aircraft System Observations in Complex Terrain: Observing System Experiments
Uncrewed aircraft system (UAS) observations from the Lower Atmospheric Profiling Studies at Elevation–A Remotely-Piloted Aircraft Team Experiment (LAPSE-RATE) field campaign were assimilated into a high-resolution configuration of the Weather Research and Forecasting (WRF) Model. The impact of assimilating targeted UAS observations in addition to surface observations was compared to that obtained when assimilating surface observations alone using observing system experiments (OSEs) for a terrain-driven flow case and a convection initiation (CI) case observed within Colorado’s San Luis Valley (SLV). The assimilation of UAS observations in addition to surface observations results in a clear increase in skill for both flow regimes over that obtained when assimilating surface observations alone. For the terrain-driven flow case, the UAS observations improved the representation of thermal stratification across the northern SLV, which produced stronger upvalley flow over the eastern half of the SLV that better matched the observations. For the CI case, the UAS observations improved the representation of the pre-convective environment by reducing dry biases across the SLV and over the surrounding terrain. This led to earlier CI and more organized convection over the foothills that spilled outflows into the SLV, ultimately helping to increase low-level convergence and CI there. In addition, the importance of UAS capturing an outflow that originated over the Sangre de Cristo Mountains and triggered CI is discussed. These outflows and subsequent CI were not well captured in the simulation that assimilated surface observations alone. We report that observations obtained with a fleet of UAS are shown to notably improve high-resolution analyses and short-term predictions of two very different mesogamma-scale weather events.
54 ENVIRONMENTAL SCIENCES↗
Dynamic Resectorization and Coordination Technology: An Evaluation of Air Traffic Control Complexity
The work described in this report is done under contract with the National Aeronautics and Space Administration (NASA) to support the Advanced Air Transportation Technology (AATR) program. The goal of this program is to contribute to and accelerate progress in Advanced Air Transportation Technologies. Wyndemere Incorporated is supporting this goal by studying the complexity of the Air Traffic Specialist's role in maintaining the safety of the Air Transportation system. It is envisioned that the implementation of Free Flight may significantly increase the complexity and difficulty of maintaining this safety. Wyndemere Incorporated is researching potential methods to reduce this complexity. This is the final report for the contract.
Brinton, Christopher R.↗
Photodissociation and Infrared Spectroscopy of Uranium–Nitrogen Cation Complexes
Laser vaporization of uranium in a pulsed supersonic expansion of nitrogen is used to produce complexes of the form U + (N 2 ) n (n = 1–8). These ions are mass selected in a reflectron time-of-flight spectrometer and studied with visible and UV laser fixed-frequency photodissociation and with tunable infrared laser photodissociation spectroscopy. The dissociation patterns and spectroscopy of U + (N 2 ) n indicate that N 2 ligands are intact molecules and that there is no insertion chemistry resulting in UN + or NUN + . Fixed frequency photodissociation at 532 and 355 nm indicate that the U + –N 2 bond dissociation energy varies little with changing coordination. The photon energy and the number of ligands eliminated allow an estimate of the average U + –N 2 dissociation energy of 12 kcal/mol. Infrared bands are observed for these complexes near the N–N stretch vibration via elimination of N 2 molecules. These resonances are observed to be shifted about 130 cm–1 to the red from the free-N 2 frequency for complexes with n = 3–8. Density functional theory indicates that U + is most stable in the sextet state in these complexes and that N 2 molecules bind in end-on configurations. Furthermore, the fully coordinated complex is predicted to be U + (N 2 ) 8 , which has a cubic structure. The vibrational frequencies predicted by theory are consistently lower than those in the experiment, independent of the isomeric structure or spin state of the complexes. Despite its failure to reproduce the infrared spectra, theory provides an average U + –N 2 dissociation energy of 11.8 ± 0.5 kcal/mol, in good agreement with the value from the experiments.
11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
Ancillary Steric Effects on the Activation of SiH Bonds in Arylsilazido Rare-Earth Compounds
Three new hydridosilazido ligands, –N(SiHMe 2 )Aryl (Aryl = Ph, 2,6-C 6 Me 2 H 3 (dmp), 2,6-C 6 iPr 2 H 3 (dipp)) and their rare-earth complexes Ln{N(SiHMe 2 )Aryl} 3 (THF) n (Ln = Sc, Y, Lu; Aryl = Ph, n = 2; Aryl = dmp, n = 1; Aryl = dipp, n = 0) were synthesized to study the relationships among ligand steric properties, secondary Ln←H–Si bonding, and the reactivity of amide and SiH groups. In these compounds, the steric encumbrance of the aryl group was systematically increased from phenyl to 2,6-dimethylphenyl to 2,6-diisopropylphenyl. NMR, IR, and X-ray diffraction studies of the complexes characterize the number of secondary interactions and additional THF ligands coordinated to the rare-earth centers. The complexes with the smallest phenylsilazido ligands, Ln{N(SiHMe 2 )Ph} 3 (THF) 2 , contain features associated with three nonbridging 2-center-2-electron (2c-2e) Si–H bonds. Characterization of intermediate-sized Ln{N(SiHMe 2 )dmp} 3 THF reveals three and two Ln←H–Si interactions for yttrium and lutetium analogues, respectively, with both metals having one coordinated THF per complex. Ln{N(SiHMe 2 )dipp} 3 is formed solvent-free, and all three ligands adopt Ln←H–Si bonding modes. The reaction between Ln{N(SiHMe 2 )dipp} 3 and ketones provides the hydrosilylated product via addition of C=O and Si–H bonds, which occurs rapidly even at low temperature. Furthermore, this reaction is proposed to occur through an associative mechanism on the basis of negative activation entropy measured for substitution of pyridine in Ln{N(SiHMe 2 )dipp} 3 ·NC 5 H 5 .
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
CO oxidation over a ligand coordinated single site Rh catalyst: identification of the active complex
Single atom catalysis has evolved as a promising strategy to enhance atom utilization efficiency, lower reaction temperatures, and control reaction pathways in heterogeneous catalytic reactions. An important challenge using supported single atom catalysts is the stability of metal single atoms during reactions. Here, we present an approach to stabilize single rhodium atoms on a titania support via a metal–ligand coordination strategy. We explore the reaction activity and mechanism of CO oxidation, as well as the stability under oxidative reaction conditions. Kinetic studies suggest that, with an excess of oxygen in the feed gas, oxygen activation is more facile on defective titania surfaces than on pristine titania surfaces. In situ diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) analysis shows that on the pristine titania surface, the 1,10-phenanthroline-5,6-dione (PDO) coordinated Rh catalyst (Rh–PDO/TiO 2 ) catalyzes CO oxidation via the formation of carbonate-like species, which is similar to what occurs on Rh nanoparticle catalysts. However, on the defective titania surface, no carbonate species form for Rh–PDO/def-TiO 2 . The supported Rh–ligand catalysts are also shown to be very stable in such a reaction environment at elevated temperatures, potentially allowing for wide applications.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Coupled Cluster Study of the Interactions of AnO 2 , AnO 2 + , and AnO 2 2+ (An = U, Np) with N 2 and CO
We report thermochemical and spectroscopic properties for actinyl complexes involving UO 2 2+/1+/0 and NpO 2 2+/1+/0 with N 2 and CO, together with the UO 2 -O 2 , UO 2 + -O 2 , and UO 2 + -NO complexes, have been studied for the first time using an accurate composite coupled cluster approach. Two general bonding motifs were investigated, end-on (η 1 ) and side-on (η 2 ) relative to the metal center of the actinyls. For end-on CO complexes, both C-coordinated (An-C) and O-coordinated (An-O) structures were examined, with the former always being lower in energy. All of the η 1 complexes were calculated to be stable, with dissociation energies ranging from 2 to 36 kcal/mol, except for that of UO 2 + -O 2 (the η 1 orientation for UO 2 + -NO was not amenable to single reference coupled cluster). In agreement with a previous study, the η 2 structure for UO 2 + -O 2 was calculated to be relatively strongly bound, by 22.3 kcal/mol in this work. The closely related NO complex, however, had a calculated dissociation energy of just 4.0 kcal/mol. The binding energy of O 2 to neutral UO 2 in a η 2 orientation was calculated to be very strong, 75.4 kcal/mol, and strongly resembled a UO 2 + (O 2 – ) complex at equilibrium. The N–N and C–O bonds were found to be somewhat activated for all the side-on (η 2 ) neutral An(IV) complexes, with stretching frequencies of N 2 or CO being red-shifted by as much as 480 cm –1 with a 0.06 Å bond length elongation. Dissociation energies for the η 1 complexes are strongly correlated with the extent of electron transfer from ligand to actinyl. The nature of bonding in the actinyl complexes is examined using natural resonance theory (NRT). The correlation between bonding motif and small molecule activation is in agreement with experiments in condensed phases.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Regulation of Chloroplast Division and Compartment Size (Final Technical Report)
During leaf growth and development, chloroplasts numbers increase as cells expand to maximize energy capture and photosynthetic capacity. Chloroplasts proliferate by dividing in the middle, producing a large population of small organelles of similar size and shape. This process is orchestrated by macromolecular complexes located both inside and outside the chloroplast whose assembly and contractile activity across the two envelope membranes must be coordinated and spatially regulated. Through research supported by our DOE funding, and by exploiting the powerful model system Arabidopsis thaliana, we have significantly advanced our knowledge of how coordination of the division complexes is achieved and how division-site placement is spatially restricted to the middle of the chloroplast. Using chloroplast division mutants, we gained new understanding of how chloroplast size and shape influence chloroplast movement and photosynthetic performance. We identified a gene contributing to natural variation in chloroplast size. Major findings are highlighted.
59 BASIC BIOLOGICAL SCIENCES↗
Structure and bonding of a radium coordination compound in the solid state
The structure and bonding of radium (Ra) is poorly understood because of challenges arising from its scarcity and radioactivity. Here we report the synthesis of a molecular Ra 2+ complex using 226 Ra and the organic ligand dibenzo-30-crown-10, and its characterization in the solid state by single-crystal X-ray diffraction. The crystal structure of the Ra 2+ complex shows an 11-coordinate arrangement comprising the 10 donor O atoms of dibenzo-30-crown-10 and that of a bound water molecule. Under identical crystallization conditions, barium (Ba 2+ ) yielded a 10-coordinate ‘Pac-Man’-shaped structure lacking water. Furthermore, the bond distance between the Ra centre and the O atom of the coordinated water is substantially longer than would be predicted from the ionic radius of Ra 2+ and by analogy with Ba 2+ , supporting greater water lability in Ra 2+ complexes than in their Ba 2+ counterparts. In conclusion, barium often serves as a non-radioactive surrogate for radium, but our findings show that Ra 2+ chemistry cannot always be predicted using Ba 2+ .
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Synthesis and Structural Investigation of Rigid Naphthyridine-Bis(carbene) for Trigonal Planar Coordination of Coinage Metals
Coinage metal complexes, particularly Cu(I) and Au(I), supported by N-heterocyclic carbenes are of broad interest in organometallic synthesis, catalysis, and luminescent materials. The d 10 coinage metals can adopt varied linear, trigonal planar, and tetrahedral geometries. However, two-coordinate, linear Cu(I) and Au(I) complexes supported by sterically demanding monodentate or chelating carbenes are generally observed. In most cases, chelating ligands generate multinuclear species with linear geometries at the corresponding Cu(I) centers rather than mononuclear complexes. In this report, we synthesized two bis(carbene) ligands anchored by a flexible bipyridine and a rigid naphthyridine backbone with tunable proximal and distal steric properties at the wingtips to examine the influence of backbone rigidity and directionality of carbene donors on the formation of trigonal planar coinage metal species. Here, the bipyridine-bis(carbene) (ImPy) 2 ligand exclusively stabilizes dinuclear chloride complexes of Cu(I) and Ag(I), whereas the naphthyridine-bis(carbene) (NBC) stabilizes mononuclear, trigonal planar chloride complexes of Cu(I) and Ag(I) and a dinuclear chloride Au(I) complex.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Coordination Chemistry of Solvated Metal Ions in Soft Donor Solvents
The structures of hexaammine solvated indium(III) and thallium(III) ions in liquid ammonia solution are determined by EXAFS. Both complexes have regular octahedral coordination geometry with mean In-N and Tl-N bond distances of 2.23(1) and 2.29(2) Å, respectively. Ammine solvated thallium(III) in liquid ammonia is characterized with 205Tl NMR measurements. Solvents such as liquid ammonia, N,N-dimethylthioformamide (DMTF), trialkyl and triphenyl phosphite and phosphine are strong electron pair donors and thereby able to form bonds with a large covalent contribution with strong electron pair acceptors. A survey of reported structures of ammine, DMTF, trialkyl and triphenyl phosphite and phosphine solvated metal ions in the solid state and solution is presented. The M-N and M-S bond distances in ammine and DMTF solvated metal ions are compared with the M-O bond distance in the corresponding metal ion hydrates, expected to form mainly electrostatic interactions with metal ions. The d10 metal ions have high ability to form bonds with a high degree of covalency with increasing ability down the group and with decreasing charge of the metal ion. The difference in M-N and M-O bond distances between ammine solvated and hydrated metal ions with the same coordination geometry decreases significantly with the increasing ability of the metal ion to form bonds with a large covalent contribution. This difference correlates well with the covalent bonding index, γM2*r.
Biochemistry & Molecular Biology↗
Artificial Iron Proteins: Modeling the Active Sites in Non-Heme Dioxygenases
An important class of non-heme dioxygenases contains a conserved Fe binding site that consists of a 2-His-1-carboxylate facial triad. Results from structural biology show that, in the resting state, these proteins are six-coordinate with aqua ligands occupying the remaining three coordination sites. Here, we have utilized biotin–streptavidin (Sav) technology to design new artificial Fe proteins (ArMs) that have many of the same structural features found within active sites of these non-heme dioxygenases. An Sav variant was isolated that contains the S 112 E mutation, which installed a carboxylate side chain in the appropriate position to bind to a synthetic Fe II complex confined within Sav. Structural studies using X-ray diffraction (XRD) methods revealed a facial triad binding site that is composed of two N donors from the biotinylated ligand and the monodentate coordination of the carboxylate from S 112 E. Two aqua ligands complete the primary coordination sphere of the Fe II center with both involved in hydrogen bond networks within Sav. The corresponding Fe III protein was also prepared and structurally characterized to show a six-coordinate complex with two exogenous acetato ligands. The Fe III protein was further shown to bind an exogenous azido ligand through replacement of one acetato ligand. Spectroscopic studies of the ArMs in solution support the results found by XRD.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Random coordinate descent: A simple alternative for optimizing parameterized quantum circuits
Variational quantum algorithms rely on the optimization of parameterized quantum circuits in noisy settings. The commonly used back-propagation procedure in classical machine learning is not directly applicable in this setting due to the collapse of quantum states after measurements. Thus, gradient estimations constitute a significant overhead in a gradient-based optimization of such quantum circuits. This paper introduces a random coordinate descent algorithm as a practical and easy-to-implement alternative to the full gradient descent algorithm. This algorithm only requires one partial derivative at each iteration. Motivated by the behavior of measurement noise in the practical optimization of parameterized quantum circuits, this paper presents an optimization problem setting that is amenable to analysis. Under this setting, the random coordinate descent algorithm exhibits the same level of stochastic stability as the full gradient approach, making it as resilient to noise. The complexity of the random coordinate descent method is generally no worse than that of the gradient descent and can be much better for various quantum optimization problems with anisotropic Lipschitz constants. Theoretical analysis and extensive numerical experiments validate our findings. Published by the American Physical Society 2024
Ding, Zhiyan (ORCID:000000018863403X)↗
High methylation potential of mercury complexed with mixed thiolate ligands by Geobacter sulfurreducens PCA
We report some thiols, such as cysteine (CYS) at moderate concentrations (10–500 µM), can enhance methylmercury (MeHg) formation by Geobacter sulfurreducens PCA, whereas others such as dithiol 2,3-dimercaptopropanesulfonate (DMPS) and 2,3-dimercaptosuccinic acid (DMSA) abolish mercury [Hg(II)] methylation. Little is known, however, about whether Hg(II) methylation could be enhanced or inhibited by the presence of mixed thiol ligands at low concentrations observed in the environment. Surprisingly we found that mixing CYS (1 µM) with DMPS (0.025–0.5 µM) or DMSA (0.025–1 µM) substantially increased MeHg production by 1.5–3.5-fold, compared to the no-thiol control, whereas complexation with a single DMPS, or DMSA, or CYS (1 µM) strongly inhibited Hg(II) methylation. Pre-equilibration between Hg(II) and thiols before the addition of cells was necessary to observe enhanced methylation. Spectroscopic analyses indicated the formation of mixed or heteroleptic coordinated Hg(II)-S 3 /S 4 complexes, which likely facilitated exchange of Hg(II) with cells and its uptake and internal transfer to the HgcAB proteins required for methylation. These results suggest that the effects of thiols on Hg(II) methylation were more complex than previously thought (using a single thiol) and thus underscore the importance of understanding how mixed thiols and their interactions with Hg(II) may ultimately influence MeHg production in the natural environment.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗