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NASA NTRS2023

Broader Impacts and Outreach Videos on Ocean Physics and Biogeochemistry

This is just a preliminary NF1676 in advance of filming for a project....A convergent team of experts in biology, chemistry, physics, engineering, mathematics, and computational modeling examine how dynamic and coupled phytoplankton-pathogen-particle-predator linkages coalesce to explain the observed high spatial variability in the efficiency of the export of particulate organic carbon (POC) to the deep ocean. They elucidate and quantify the linkages between viruses and ballast minerals to increase understanding of carbon cycling in the oceanic biological carbon pump and the impact of viruses within it. By providing knowledge than can be used to improve the parameterization of carbon export in Earth system models, the project will help reduce uncertainty in regional marine biogeochemical projections, potentially improving marine ecosystem and fisheries management on timescales from seasons to decades. The project includes activities that provide teaching resources and hands-on training to educators within a ‘Tools of Science’ program that provides a simple and succinct way to communicate the process of scientific research to students in a way that is useful to teachers. The project couples laboratory-based experiments on model host-virus-grazer systems with extensive field based observational and manipulative studies on natural populations of diatoms and coccolithophores, the two phytoplankton groups that account for most of the estimated particulate organic matter flux to the deep ocean. Experiments and measurements integrate diagnostic biological and chemical controls on infection and particle coagulation theory with microscale physics and grazing to quantify links to each hypothesized export mechanism under field-relevant turbulent conditions. Cutting-edge engineering and analytical tools are used to diagnose and track infection dynamics while characterizing and quantifying particle aggregation and disaggregation, mineral dissolution, sinking dynamics, grazing rates, and fecal pellet production at unprecedented resolution and under well-defined, microscale physical regimes. Field campaigns elucidate the relative efficiency of hypothesized mechanisms in stimulating POC export in natural blooms, while providing bulk and size-resolved estimates of POC flux.

Daniel B Whitt↗
NASA NTRS2022

Estimates of Diurnal and Daily Net Primary Productivity Using the Geostationary Ocean Color Imager (GOCI) Data

For the past three decades, polar-orbiting ocean color satellites have provided local, regional to global scale estimates of oceanic net primary production that have greatly aided studies of ocean carbon cycling, food web dynamics and climate change. Despite considerable progress, accurate estimates of daily ocean productivity from space have not been realized because polar-orbiting satellites are unable to account for variations in phytoplankton physiology and carbon fixation rates from changing incident irradiance levels over the course of the day. Here we have attempted to exploit the unique short-temporal measurements provided by the Korean Geostationary Ocean Color Imager (GOCI), to obtain for the first time, diurnal and daily measurements of surface- and euphotic-column integrated Net Primary Productivity (NPP). These estimates are based on the Absorption Based Productivity Model (AbPM), and are calibrated with a bio-optical database of measurements made at different times of the day during the Korea-US Ocean Color (KORUS-OC) cruise in May–June 2016. Photo-physiological rate estimates, varied across different water types encountered around the Korean Peninsula, but on account of their limited number, were regionally scaled through the use of dynamic optical-biogeochemical (O-BGC) Biomes. Comparisons of GOCI derived estimates of daily and weekly integrated NPP against in-situ measurements, clearly underscore the superiority of geostationary over polar-orbiting ocean color satellites, which consider the strong short-term fluctuations in phytoplankton light absorption and incident irradiance fields over the course of the day.

Diurnal productivity↗
NASA NTRS2022

The Transformation and Export of Organic Carbon Across an Arctic River-Delta-Ocean Continuum

The Arctic Ocean is surrounded by land that feeds highly seasonal rivers with water enriched in high concentrations of dissolved and particulate organic carbon (DOC and POC). Explicit estimates of the flux of organic carbon across the land-ocean interface are difficult to quantify and many interdependent processes makes source attribution difficult. A high-resolution 3-D biogeochemical model was built for the lower Yukon River and coastal ocean to estimate biogeochemical cycling across the land-ocean continuum. The model solves for complex reactions related to organic carbon transformation, including mechanistic photodegradation and multi-reactivity microbial processing, DOC to POC flocculation, and phytoplankton dynamics. The baseline DOC and POC flux out of the delta from April to September 2019, was 977 and 536 Gg C (~80% of the annual total), but only 50% of the DOC and 25% of the POC exited the plume across the 10 m isobath. Microbial breakdown of DOC accounted for a net loss of 168 Gg C (17% of delta export) within the plume and photodegradation accounted for a net loss of 46.6 Gg C DOC (5% of delta export) in 2019. Flocculation decreased the total organic carbon flux by only 6.4 Gg C (~1%), while POC sinking accounted for 63.3 Gg C (10%) settling in the plume. The loss of chromophoric dissolved organic matter (CDOM) due to photodegradation increased the light available for phytoplankton growth throughout the coastal ocean, demonstrating the secondary effects that organic carbon reactions can have on biological processes and the net coastal carbon flux.

Land-Ocean Continuum↗
NASA NTRSDate not supplied

Nutrient Controls on Net Primary Production Decline in the Subtropical North Atlantic

The subtropical North Atlantic Ocean (STNA) has been experiencing a steady decline in both Chlorophyll a (the primary photosynthetic pigment in phytoplankton used to identify abundance in the ocean) and net primary production (the net amount carbon fixed in the surface ocean by phytoplankton after losses to respiration). This decline is spread across the entire STNA and has been ongoing since the beginning of the satellite ocean color record in 1997. Previous work has attributed these changes to decreased nutrient exchange between nutrient-poor surface waters and nutrient-rich deep waters resulting from increased stratification driven by surface warming due to climate change. Our results from an analysis of satellite data, Argo float data, and historical cruise data show significant inconsistencies with this hypothesis. We observe a trend of increased stratification for half the STNA basin but decreased stratification in the other half. Where we see increased stratification, we also see changes in nitrate that would result in an increased delivery of nitrate to surface waters if vertical transport across the stratified layers was the dominant source of nutrients. Our working hypothesis is that changes in circulation in the subtropical gyre have resulted in an altered mix of source waters with distinct nutrient characteristics. The mechanism behind the decline in primary production in the STNA remains unclear. We will use the ECCO-Darwin data-assimilative global ocean biogeochemistry model to further investigate the mechanisms behind the observed changes in production and nutrients in the STNA.

Nutrient↗
NASA NTRS2023

A Hyperspectral Inversion Framework for Estimating Absorbing Inherent Optical Properties and Biogeochemical Parameters in Inland and Coastal Waters

The simultaneous remote estimation of biogeochemical parameters (BPs) and inherent optical properties (IOPs) from hyperspectral satellite imagery of globally distributed optically distinct inland and coastal waters is a complex, unsolved, non-unique inverse problem. To tackle this problem, we leverage a machine-learning model termed Mixture Density Networks (MDNs). MDNs outperform operational algorithms by calculating the covariance between the simultaneously estimated products. We train the MDNs on a large ( N = 8237) dataset of co-aligned, in situ measured, hyperspectral remote sensing reflectance (R rs ), BPs, and absorbing IOPs from globally representative optically distinct inland and coastal waters. The estimated IOPs include absorption due to phytoplankton (a ph ), chromophoric dissolved organic matter (a cdom ), and non-algal particles (a nap ). The estimated BPs include chlorophyll-a, total suspended solids, and phycocyanin (PC). MDNs dramatically reduce uncertainty in the retrievals, relative to operational algorithms, when using a 50/50 dataset split, where the MDNs are trained on a randomly selected half of the in situ dataset and validated on the other half. Our model is shown to have higher, or equivalent, generalization performance than the calculated operational algorithms available for all BPs and IOPs (except PC) via a leave-one-out cross-validation assessment. The MDNs are sensitive to uncertainties in the hyperspectral satellite R rs , resulting from instrument noise and atmospheric correction; there is a difference of ~37.4–62.8% (using median symmetric accuracy) between the MDNs’ estimates derived from co-located satellite-derived R rs and in situ R rs . Of the IOPs, a cdom and a nap are less sensitive to uncertainties in hyperspectral satellite imagery relative to a ph , with remote estimates of a ph exhibiting incorrect spectral shape and magnitude relative to in situ measured IOPs. Despite the uncertainties in satellite derived R rs , the spatial distributions of BPs and IOPs in MDN-derived product maps of Lake Erie and the Curonian Lagoon, based on imagery taken with the Hyperspectral Imager for the Coastal Ocean (HICO) and PRecursore Iper-Spettrale della Missione Applicativa (PRISMA), are confirmed via co-aligned in situ measurements and agree with the literature’s understanding of these well-studied regions. The consistency and accuracy of the model on HICO and PRISMA imagery, despite radiometric uncertainties, demonstrate its applicability to future hyperspectral missions, such as the Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission, where the simultaneous estimation model will serve as a key part of phytoplankton community composition analysis.

Ryan E. O'Shea↗
NASA NTRS1989

Lipophilic pigments from the benthos of a perennially ice-covered Antarctic lake

The benthos of a perennially ice-covered Antarctic lake, Lake Hoare, contained three distinct 'signatures' of lipophilic pigments. Cyanobacterial mats found in the moat at the periphery of the lake were dominated by the carotenoid myxoxanthophyll; carotenoids: chlorophyll a ratios in this high light environment ranged from 3 to 6.8. Chlorophyll c and fucoxanthin, pigments typical of golden-brown algae, were found at 10 to 20 m depths where the benthos is aerobic. Anaerobic benthic sediments at 20 to 30 m depths were characterized by a third pigment signature dominated by a carotenoid, tentatively identified as alloxanthin from planktonic cryptomonads, and by phaeophytin b from senescent green algae. Pigments were not found associated with alternating organic and sediment layers. As microzooplankton grazers are absent from this closed system and transformation rates are reduced at low temperatures, the benthos beneath the lake ice appears to contain a record of past phytoplankton blooms undergoing decay.

NASA Discipline Number 52-30↗
NASA NTRS2013

The Ocean Colour Climate Change Initiative: III. A Round-Robin Comparison on In-Water Bio-Optical Algorithms

Satellite-derived remote-sensing reflectance (Rrs) can be used for mapping biogeochemically relevant variables, such as the chlorophyll concentration and the Inherent Optical Properties (IOPs) of the water, at global scale for use in climate-change studies. Prior to generating such products, suitable algorithms have to be selected that are appropriate for the purpose. Algorithm selection needs to account for both qualitative and quantitative requirements. In this paper we develop an objective methodology designed to rank the quantitative performance of a suite of bio-optical models. The objective classification is applied using the NASA bio-Optical Marine Algorithm Dataset (NOMAD). Using in situ Rrs as input to the models, the performance of eleven semianalytical models, as well as five empirical chlorophyll algorithms and an empirical diffuse attenuation coefficient algorithm, is ranked for spectrally-resolved IOPs, chlorophyll concentration and the diffuse attenuation coefficient at 489 nm. The sensitivity of the objective classification and the uncertainty in the ranking are tested using a Monte-Carlo approach (bootstrapping). Results indicate that the performance of the semi-analytical models varies depending on the product and wavelength of interest. For chlorophyll retrieval, empirical algorithms perform better than semi-analytical models, in general. The performance of these empirical models reflects either their immunity to scale errors or instrument noise in Rrs data, or simply that the data used for model parameterisation were not independent of NOMAD. Nonetheless, uncertainty in the classification suggests that the performance of some semi-analytical algorithms at retrieving chlorophyll is comparable with the empirical algorithms. For phytoplankton absorption at 443 nm, some semi-analytical models also perform with similar accuracy to an empirical model. We discuss the potential biases, limitations and uncertainty in the approach, as well as additional qualitative considerations for algorithm selection for climate-change studies. Our classification has the potential to be routinely implemented, such that the performance of emerging algorithms can be compared with existing algorithms as they become available. In the long-term, such an approach will further aid algorithm development for ocean-colour studies.

Phytoplankton↗
NASA NTRS2014

Remotely Searching for Noctiluca Miliaris in the Arabian Sea

Reversing monsoonal winds in the Arabian Sea result in two seasons with elevated biological activity, namely the annual summer Southwest Monsoon (SWM; June to September) and winter Northeast Monsoon (NEM; November to March) [Wiggert et al., 2005]. Generally speaking, the SWM and NEM create two geographically distinct blooms [Banse and English, 2000; Levy et al., 2007]. In the summer, winds from the southwest drive offshore Ekman transport and coastal upwelling along the northwestern coast of Africa, which brings nutrient-rich water to the surface from below the permanent thermocline [Bauer et al., 1991]. In the winter, cooling of the northern Arabian Sea causes surface waters to sink, which generates convective mixing that injects nutrients throughout the upper mixed layer [Madhupratap et al., 1996]. This fertilization of otherwise nutrient-deplete surface waters produces one of the most substantial seasonal extremes of phytoplankton biomass and carbon flux anywhere in the world [Smith, 2005].

Arabian Sea↗
NASA NTRS2018

Satellite Remote Sensing: Ocean Color

Satellite ocean color instruments routinely provide global, synoptic views of the Earth's marine biosphere. These spaceborne radiometers measure light exiting the top of the atmosphere at discrete wavelengths in the ultraviolet to shortwave infrared region of the spectrum. This includes measurements of the color of the ocean - information used to infer the contents of the sunlit upper ocean, such as concentrations of phytoplankton, suspended sediments, and dissolved organic carbon. Continuous marine biological, ecological, and biogeochemical data records from satellite ocean color instruments now span over twenty years. This time-series not only supports Earth system and climate research, but also ecosystem and watershed management activities, including detection of nuisance and harmful algal blooms.

Biosphere↗
NASA NTRS2022

Alignment of Optical Backscatter Measurements from the EXPORTS Northeast Pacific Field Deployment

Backscattering of light is commonly measured by ocean observing systems, including ships and autonomous platforms, and is used as a proxy for the concentration of water column constituents such as phytoplankton and particulate carbon. Multiple on-going projects involve large numbers of independent measurements of backscatter, as well as other biologically relevant parameters, to understand how biology is changing in time and space throughout the global ocean. Rarely are there sufficient measurements to test how well these instruments are inter-calibrated in real-world deployment conditions. This paper develops a procedure to align multiple independently calibrated backscatter instruments to each other using nearby profiling casts and applies this method to nine instruments deployed during a recent field campaign in the North Pacific during August–September of 2018. This process revealed several incorrect calibrations; post-alignment, all nine instruments aligned extremely well with each other. We also tested an alignment to a deep-water reference and found that this method is generally sufficient but has significant limitations; this procedure lacks the ability to correct instruments measuring only shallow profiles and can only account for additive offsets, not multiplicative changes. These findings highlight the utility of process studies involving several independent measurements of similar parameters in the same area.

North Pacific↗
NASA NTRS1966

Marine Biology, volume II

Symposium on marine biology - growth rate, cycles, transportation, photosynthesis, distribution, sampling, nutrition, and light control of natural phytoplankton ecological systems

CONFERENCE↗
NASA NTRS1966

Composition

Water temperature, pH difference, geographical location, and other factors influence on composition and distribution of natural ecological systems of phytoplankton species

PH FACTOR↗
NASA NTRS1966

Plankton

Grazing and exclusion of marine animals by overconcentration of phytoplankton

PLANKTON↗
NASA NTRS1972

Agricultural and urban pollution

The degradation produced by the introduction of agricultural and urban wastes into estuarine systems, with emphasis on the Chesapeake Bay area, is discussed. The subjects presented are: (1) effects of sediment loading and (2) organic and nutrient loading problems. The impact of high turbidity on the biological life of the bay is analyzed. The sources of nutrients which produce over-enrichment of the waters and the subsequent production of phytoplankton are examined.

Brehmer, M. L.↗
NASA NTRS1971

New pre-Paleozoic nannofossils from the Stoer Formation /Torridonian/, northwest Scotland.

The nature of the sph eroidal unicellular fossils 10 to 62 micrometers in diameter that are abundant in black shales referred to the Stoer Formation of lower Torridonian age at Stoer Bay, in northwest Scotland, is examined. It is shown that their biological affinities are obscure; it is, however, not unlikely that many or most of them are independent unicellular members of the marine phytoplankton.

Cloud, P.↗