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At least 289 records · Page 16

Self-Assembly of Metallo-Supramolecules under Kinetic or Thermodynamic Control: Characterization of Positional Isomers Using Scanning Tunneling Spectroscopy

Coordination-driven self-assembly has been extensively employed to construct a variety of discrete structures as a bottom-up strategy. However, mechanistic understanding regarding whether self-assembly is under kinetic or thermodynamic control is less explored. To date, such mechanistic investigation has been limited to distinct, assembled structures. It still remains a formidable challenge to study the kinetic and thermodynamic behavior of self-assembly systems with multiple assembled isomers due to the lack of characterization methods. Herein, we use a stepwise strategy which combined self-recognition and self-assembly processes to construct giant metallo-supramolecules with 8 positional isomers in solution. With the help of ultrahigh-vacuum, low-temperature scanning tunneling microscopy and scanning tunneling spectroscopy, we were able to unambiguously differentiate 14 isomers on the substrate which correspond to 8 isomers in solution. Through measurement of 162 structures, the experimental probability of each isomer was obtained and compared with the theoretical probability. Finally, such a comparison along with density functional theory (DFT) calculation suggested that although both kinetic and thermodynamic control existed in this self-assembly, the increased experimental probabilities of isomers compared to theoretical probabilities should be attributed to thermodynamic control.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Single-Molecule Charge Transport through Positively Charged Electrostatic Anchors

The charge transport in single-molecule junctions depends critically on the chemical identity of the anchor groups that are used to connect the molecular wires to the electrodes. In this research, we report a new anchoring strategy — called the electrostatic anchor here — formed through the efficient Coulombic interaction between the gold electrodes and the positively charged pyridinium terminal groups. Our results show that these pyridinium groups serve as efficient electrostatic anchors forming robust gold–molecule–gold junctions. Here, we have also observed binary switching in dicationic viologen molecular junctions, demonstrating an electron injection-induced redox switching in single-molecule junctions. We attribute the difference in low- and high conductance states to a dicationic ground state and a radical cationic metastable state, respectively. Overall, this anchoring strategy and redox switching mechanism could constitute the basis for a new class of redox-activated single-molecule switches.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Contra-Thermodynamic Positional Isomerization of Olefins

A light-driven method for the contra-thermodynamic positional isomerization of olefins is described. In this work, stepwise PCET activation of a more substituted and more thermodynamically stable olefin substrate is mediated by an excited-state oxidant and a Brønsted base to afford an allylic radical that is captured by a Cr(II) cocatalyst to furnish an allylchromium- (III) intermediate. In situ protodemetalation of this allylchromium complex by methanol is highly regioselective and affords an isomerized and less thermodynamically stable alkene product. The higher oxidation potential of the less substituted olefin isomer renders it inert to further oxidation by the excited-state oxidant, enabling it to accumulate in solution over the course of the reaction. A broad range of isopropylidene substrates are accommodated, including enol ethers, enamides, styrenes, 1,3-dienes, and tetrasubstituted alkyl olefins. Mechanistic investigations of the protodemetalation step are also presented.

14 SOLAR ENERGY↗

Positional Isomer of P3HB by Stereoselective Polymerization of Racemic α-Methyl-β-propiolactone Delivers Polyethylene-like Properties

Biobased and biodegradable poly(3-hydroxybutyrolactone) (P3HB) has long been considered as a more sustainable alternative to petroleum-based, nonbiodegradable polyolefins, but its properties are far off from its polyolefin (polyethylene, PE, and polypropylene, PP) counterpart’s unique set of thermal (low T g below −20 °C and high T m > 100 °C) and mechanical (high ductility >350%) characteristics. Here, we report that a positional isomer of P3HB, poly(3-hydroxy-2-methylpropionate) (P3H2MP), synthesized by catalyst-controlled stereoselective polymerization of racemic α-methyl-β-propiolactone, can match that demanding set of thermomechanical properties of PE. In particular, isotactic-rich P3H2MP, readily synthesized under ambient conditions, reaches high M n close to one million Da, T g down to −25 °C, T m up to 115 °C, tensile strength up to 64 MPa, and toughness up to 131 MJ m –3 , thus mechanically outperforming PE while maintaining a comparable low T g and high T m combination. A P3H2MP-based triblock copolymer further widens the low-high temperature window from T g = −29 °C to T m = 186 °C, resembling those of PP. These results show that P3H2MP exhibits the unique combination of thermomechanical properties matching those of high-performance polyolefins.

Biopolymers↗

Observational Evidence of State‐Dependent Positive and Negative Land Surface Feedback on Afternoon Deep Convection Over the Southern Great Plains

Abstract The detection of soil moisture‐precipitation feedback is complicated by the dependence of feedback sign on atmospheric state and cloud types. We evaluated responses of convective clouds to changes in surface evaporative fraction (EF) from satellite and ground‐based measurements over the Southern Great Plains in summer months. Strong responses to EF were inferred only after accounting for tropospheric states supporting systematically positive or negative responses. State dependence (inferred from controlled model experiments) explains the weak response found in previous studies. The probability of transitions from shallow to deep cumulus, and subsequent precipitation onset, increases by 58% over drier surfaces in weakly stratified environments having deeper boundary layers. Boundary layer dynamics play a more important role than low‐level relative humidity in these environments. Wetter surfaces yield increased deep convection in moist and thermally stratified environments. The distinct pathways of convective initiation over dry and wet land surfaces can play important roles in drought onset and termination.

Qiu, Shaoyue↗

An Assessment of Global Positioning System Velocity Uncertainty in California

We analyze data from 580 continuous global positioning system (GPS) stations in California to quantify differences in published velocity estimates from five analysis centers. Horizontal and vertical rates for individual stations can differ up to 5 mm/yr, with systematic differences in some areas comparable to deformation rates. Published velocity uncertainties vary between analysis centers and are systematically underreported in the horizontal relative to empirical uncertainties calculated from the scatter of analysis center velocities. In the vertical, published velocity uncertainties are both over and underreported and vary more widely between centers. An interpolated ensemble vertical velocity field shows high-subsidence regions in the Central Valley and Salton Trough have the largest empirical uncertainties, while station density has a modest impact on uncertainties. Applications that rely on subcentimeter GPS accuracy should consider the possibility that formal errors published with velocity rate estimates understate true velocity uncertainties in both the horizontal and vertical.

54 ENVIRONMENTAL SCIENCES↗

Dislocation-position fluctuations in solid 4He as collective variables in a quantum crystal

Abstract Quantum behavior at mesoscopic length scales is of significant interest, both from a fundamental-physics standpoint, as well as in the context of technological advances. In this light, the description of collective variables comprising large numbers of atoms, but nevertheless displaying non-classical behavior, is a fundamental problem. Here, we show that an effective-Hamiltonian approach for such variables, as has been applied to describe the quantum behavior of coupled qubit/oscillator systems, can also be very useful in understanding intrinsic behavior of quantum materials. We consider lattice dislocations – naturally occurring mesoscopic line defects in crystals – in the prototypical bosonic quantum crystal, solid 4 He. For this purpose, we map fully atomistic quantum simulations onto effective one-dimensional Hamiltonians in which the collective dislocation-position variables are represented as interacting, massive quantum particles. The results provide quantitative understanding of several experimental observations in solid 4 He.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Fine root and soil carbon stocks are positively related in grasslands but not in forests

Increasing fine root carbon (FRC) inputs into soils has been proposed as a solution to increasing soil organic carbon (SOC). However, FRC inputs can also enhance SOC loss through priming. Here, we tested the broad-scale relationships between SOC and FRC at 43 sites across the US National Ecological Observatory Network. We found that SOC and FRC stocks were positively related with an across-ecosystem slope of 7 ± 3 kg SOC m −2 per kg FRC m −2 , but this relationship was driven by grasslands. Grasslands had double the across-ecosystem slope while forest FRC and SOC were unrelated. Furthermore, deep grassland soils primarily showed net SOC accrual relative to FRC input. Conversely, forests had high variability in whether FRC inputs were related to net SOC priming or accrual. We conclude that while FRC increases could lead to increased SOC in grasslands, especially at depth, the FRC-SOC relationship remains difficult to characterize in forests.

54 ENVIRONMENTAL SCIENCES↗

Silver salt enabled H/D exchange at the β-position of thiophene rings: synthesis of fully deuterated thiophene derivatives

Here, we disclose a silver catalyzed H/D exchange reaction, which can introduce the deuterium atom at the β position of thiophene rings without the assistance of any coordinating groups. The advantages of this reaction include operation in open air, usage of D 2 O as the deuterium source, good tolerance to a range of functional groups and obtaining high atom% deuterium incorporation. In addition, this H/D exchange reaction is employed for direct deuteration of a thiophene based monomer, which is usually prepared by multistep synthesis from expensive deuterated starting materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Top-down mass spectrometry and assigning internal fragments for determining disulfide bond positions in proteins

Disulfide bonds in proteins have a substantial impact on protein structure, stability, and biological activity. Localizing disulfide bonds is critical for understanding protein folding and higher-order structure. Conventional top-down mass spectrometry (TD-MS), where only terminal fragments are assigned for disulfide-intact proteins, can access disulfide information, but suffers from low fragmentation efficiency, thereby limiting sequence coverage. Here, we show that assigning internal fragments generated from TD-MS enhances the sequence coverage of disulfide-intact proteins by 20–60% by returning information from the interior of the protein sequence, which cannot be obtained by terminal fragments alone. Further, the inclusion of internal fragments can extend the sequence information of disulfide-intact proteins to near complete sequence coverage. Importantly, the enhanced sequence information that arise from the assignment of internal fragments can be used to determine the relative position of disulfide bonds and the exact disulfide connectivity between cysteines. The data presented here demonstrates the benefits of incorporating internal fragment analysis into the TD-MS workflow for analyzing disulfide-intact proteins, which would be valuable for characterizing biotherapeutic proteins such as monoclonal antibodies and antibody–drug conjugates.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Positional ordering induced by dynamic steric interactions in superparamagnetic rods

The dynamic motion produced by precessing magnetic fields can drive matter into far-from-equilibrium states. We predict 1D periodic ordering in systems of precessing rods when magnetic interactions between rods remain insignificant. The precession angle of the rods is completely determined by the field's precession angle and the ratio of the field's precession frequency and the characteristic response frequency of the rods. Here, we develop a molecular dynamics model that explicitly calculates magnetic interactions between particles, and we also simulate rods in the limit of a strong and fast precessing magnetic field where inter-rod magnetic interactions are negligible, using a purely steric model. Our simulations show how steric interactions drive the rods from a positionally disordered phase (nematic) to a layered (smectic) phase. As the rod precession angle increases, the nematic–smectic transition density significantly decreases. The minimization of unfavorable steric interactions also induces phase separation in binary mixtures of rods of different lengths. This effect is general to any force that produces precession in elongated particles. This work will advance the understanding and control of out-of-equilibrium soft matter systems.

42 ENGINEERING↗

Computational analysis of ion orbital loss in diverted positive- and negative-triangularity tokamaks

The mechanism of ion orbital loss in diverted negative-triangularity (NT) tokamaks is significantly different from that of positive-triangularity (PT) tokamaks. The orbital loss from the edge of NT tokamaks can be quite large, because the separatrix X-point is located on the outboard side, meaning that trapped ions crossing the separatrix are lost to the inboard divertor plate after a mirror reflection on the side of the strong magnetic field. NT tokamaks have difficulties in building up steep pressure gradients in the edge regions. However, the majority of trapped ions crossing the separatrix in PT tokamaks survive (through complete banana motions) without reaching the X-point region. For NT tokamaks, topological changes in the trapped ion trajectories can be achieved in the presence of the radial electric field, thus reducing the orbital loss, whereas for PT tokamaks, the orbital loss is relatively insensitive to the radial electric field.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Characterization of electron spin polarization from positive electron affinity GaAs photocathodes

Negative Electron Affinity (NEA) GaAs photocathodes are widely used to generate spin-polarized electron beams, typically achieving Electron Spin Polarizations (ESPs) in the range of 35%–40%. However, when operated in a Positive Electron Affinity (PEA) state, where a potential barrier inhibits low-energy electrons from escaping into vacuum, measured ESPs can exceed 50%. This effect can occur naturally during photocathode operation, as the NEA surface activation layers can degrade easily over time, increasing the electron affinity. In this work, we investigate and characterize the behavior of enhanced ESPs under PEA conditions. We present experimental measurements of ESP using a retarding-field Mott polarimeter on GaAs photocathodes with controlled and varying electron affinities. These results are complemented by theoretical explanations considering the material band structure, the light excitation profile, and spin depolarization mechanisms.

Electronic band structure↗

Stochasticity and positive feedback enable enzyme kinetics at the membrane to sense reaction size

Here, we present detailed kinetic analyses of a panel of soluble lipid kinases and phosphatases, as well as Ras activating proteins, acting on their respective membrane surface substrates. The results reveal that the mean catalytic rate of such interfacial enzymes can exhibit a strong dependence on the size of the reaction system—in this case membrane area. Experimental measurements and kinetic modeling reveal how stochastic effects stemming from low molecular copy numbers of the enzymes alter reaction kinetics based on mechanistic characteristics of the enzyme, such as positive feedback. For the competitive enzymatic cycles studied here, the final product—consisting of a specific lipid composition or Ras activity state—depends on the size of the reaction system. Furthermore, we demonstrate how these reaction size dependencies can be controlled by engineering feedback mechanisms into the enzymes.

59 BASIC BIOLOGICAL SCIENCES↗

A comparative study of internal kink stability in EU DEMO designs with negative and positive triangularity

Abstract Internal kink (IK) instability is investigated for European demonstration fusion reactor (EU DEMO) plasmas in both negative triangularity (NT) and positive triangularity (PT) configurations. For NT plasmas, the IK becomes more unstable as an ideal conformal wall moves away from the plasma boundary, with the mode growth rate saturating at the wall radial location of about b / a = 1.5 , where a is the plasma minor radius and b the wall radial location. The plasma resistivity destabilizes the IK mode. The effect of sub-sonic toroidal plasma flow is sufficiently weak and can thus be ignored for these EU DEMO equilibria. These results are consistent with those for PT plasmas, albeit with larger mode growth rate in the NT configuration. Both perturbative and self-consistent magneto-hydrodynamic (MHD)-kinetic hybrid calculations predict (partial) stabilization of the IK modes in both NT and PT configurations, with inclusion of various kinetic contributions. Precessional drift motion of trapped fusion-born alphas in EU DEMO produces weak stabilization to the IK mode. Stronger stabilization occurs with the toroidal precession of trapped thermal particles (ions and electrons) and the bounce-transit motion of thermal ions. The stabilization is similar between the NT and PT configurations, due to the similarity of the mode eigenfunction (occupying a nearly circular region in the plasma core) despite the sign difference in the triangularity. The non-perturbative MHD-kinetic hybrid model predicts much less stabilization of the mode than the perturbative model, primarily due to the self-consistent determination of the mode eigenvalue in the former. Generally, no significant difference in the IK mode stability is found between the NT and PT plasmas in EU DEMO.

Physics↗

Global gyro-kinetic ion temperature gradient and trapped electron mode turbulence modelling in X -point geometry in negative and positive triangularity

Comparative modelling of ion temperature gradient (ITG)/trapped electron mode (TEM) turbulence in negative (NT) and positive (PT) triangularity plasma shapes was done using the nonlinear global full-f gyrokinetic particle code JOREK-GK in the realistic X-point tokamak geometry including the Scrape Off Layer (SOL) for TCV and DIII-D parameters. A comparison of JOREK-GK code with the gyrokinetic codes GS2 and GENE was done using NT/PT triangularity TCV L-modes parameters showing good agreement between codes in linear growth rates and clear beneficial effect of NT as compared to PT. Global non-linear modelling of the ITG/TEM saturated turbulence for realistic DIII-D NT pulses was done and compared with numerically constructed PT equilibrium with the same plasma profiles. Existence of longer correlation length of density fluctuations in PT compared to NT was demonstrated. Stronger and more sheared zonal flows are generated via Reynolds stress in NT compared to PT. These factors are stabilizing for TEM/ITG turbulence in NT and lead to smaller heat fluxes and heat conductivities in NT compared to PT configuration. Weak dependence of plasma confinement on collisionality and plasma rotation was found in modelling of DIII-D NT shots similar to the experiment. The confinement scaling with normalized ion gyro-radius ρ* was estimated both for NT and PT. Bohm-like scaling was obtained in both configurations, however with better confinement for NT compared to PT which could be favourable factor for reactor size machines.

ITG↗