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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 289 records · Page 16
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals

Innovative new crystallographic methods are facilitating structural studies from ever smaller crystals of biological macromolecules. In particular, serial X-ray crystallography and microcrystal electron diffraction (MicroED) have emerged as useful methods for obtaining structural information from crystals on the nanometre to micrometre scale. Despite the utility of these methods, their implementation can often be difficult, as they present many challenges that are not encountered in traditional macromolecular crystallography experiments. Here, XFEL serial crystallography experiments and MicroED experiments using batch-grown microcrystals of the enzyme cyclophilin A are described. The results provide a roadmap for researchers hoping to design macromolecular microcrystallography experiments, and they highlight the strengths and weaknesses of the two methods. Specifically, we focus on how the different physical conditions imposed by the sample-preparation and delivery methods required for each type of experiment affect the crystal structure of the enzyme.

36 MATERIALS SCIENCE↗
NASA NTRS1986

Small-scale coronal structure, part 3

Recent observations and models pertaining specifically to solar coronal bright points (BPs) and generally to small-scale coronal structure are reviewed. Two questions were addressed: What is the degree of correspondence among various alleged signatures of BPs at different levels of atmosphere and what can PBs tell about the emerging flux spectrum of the sun?

Webb, David F.↗
DOE OSTI2015

Structural properties of small rhodium clusters

We report a systematic study of the structural properties of rhodium clusters at the atomistic level. A novel global-minimum search algorithm, known as parallel tempering multicanonical basin hopping plus genetic algorithm (PTMBHGA), is used to obtain the geometrical structures with lowest minima at the semi-empirical level where Gupta potential is used to describe the atomic interaction among the rhodium atoms. These structures are then re-optimized at the density functional theory (DFT) level with exchange-correlation energy approximated by Perdew-Burke-Ernzerhof (PBE) generalized gradient approximation (GGA). The structures are optimized for different spin multiplicities. The ones with lowest energies will be taken as ground-state structures. In most cases, we observe only minor changes in the geometry and bond length of the clusters as a result of DFT-level re-optimization. Only in some limited cases, the initial geometries obtained from the PTMBHGA are modified by the re-optimization. The variation of structural properties, such as ground-state geometry, symmetry and binding energy, with respect to the cluster size is studied and agreed well with other results available in the literature.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
NASA NTRS2016

Advanced Deployable Structural Systems for Small Satellites

One of the key challenges for small satellites is packaging and reliable deployment of structural booms and arrays used for power, communication, and scientific instruments. The lack of reliable and efficient boom and membrane deployment concepts for small satellites is addressed in this work through a collaborative project between NASA and DLR. The paper provides a state of the art overview on existing spacecraft deployable appendages, the special requirements for small satellites, and initial concepts for deployable booms and arrays needed for various small satellite applications. The goal is to enhance deployable boom predictability and ground testability, develop designs that are tolerant of manufacturing imperfections, and incorporate simple and reliable deployment systems.

Belvin, W. Keith↗
NASA NTRS2004

Small-scale Interstellar Structure Toward the Open Cluster Chi Persei; Program ID: BO29 (Cycle 2)

The primary objective of this program was to obtain FUSE observations of the interstellar H2 absorption toward six early-type stars in the core of the open star cluster Chi Persei. High resolution optical observations of the interstellar Na I absorption toward these stars and others in the core of Chi Per have revealed a rich variety of small-scale diffuse ISM structure in both the distant Perseus and more local Orion spiral arms. At the 1 arc minute angular scales typically probed by the separations of these stars, this structure corresponds to respective physical length scales of 0.6 and 0.15 pc in the Perseus and Orion arm gas. The principal scientific goal of the FUSE observations was to determine if this small-scale Na I structure toward the core of Chi Per was reflected in the abundance and/or excitation of interstellar H2. In September 2001, we obtained FUSE observations of the Chi Per stars BD +56 563, BD +56 571, BD +56 573, BD +56 574, BD +56 575, and BD +56 578 for this program. The data reveal that the Perseus arm gas exhibits significant small-scale variations in the strength of its molecular hydrogen absorption while the Orion arm H2 absorption is relatively uniform. We presented these results at the January 2003 American Astronomical Society meeting in Seattle, WA (points, Meyer, Lauroesch, Nguyen, and Friedman 2002, Bulletin of the American Astronomical Society, 34,1229). Since Na I is not a dominant ion in H I clouds, the variations detected in the Perseus arm Na I line profiles could be due to spatial differences in either the physical structure or the physical conditions in the gas. Although many of the H2 absorption profiles are too saturated or too weak to be definitive in this regard, it is clear that small-scale variations are present in H2 gas with excitation as high as the J=4 rotational level. In contrast, lower spatial resolution H I 21 cm studies of the Perseus arm gas across the face of the h and Chi Per double cluster have shown smoother, continuous variations on the larger scale. In order to investigate if the global velocity structure of H2 toward h and Chi Per more closely follows the chaotic structure seen in interstellar Na I absorption or the smoother, continuous H I structure, we have expanded our FUSE study with a Cycle 4 program (D902, PI: Points) to survey the H2 absorption toward a number of other stars across the face of the double cluster. We have obtained FUSE spectra of 14 additional h and Chi Per stars through this program and are now combining all of the data into a comprehensive study that will be submitted for publication next year.

Meyer, David M.↗
NASA NTRS1991

Kinematic and precipitation structure of a small, long-lived mesoscale convective system

A comprehensive analysis using conventional single Doppler radar analyses, analysis of multiparameter (CP-2) data, network sounding and surface data, and GOES satellite data is presented to characterize the internal kinematic and precipitation structure of a small, long-lived mesoscale convective system. The data pertain to the Cooperative Huntsville Meteorological experiment conducted over northern Alabama and central Tennessee during June and July of 1986. The mesoscale convective system pulsations visible in the IR patterns were associated with the development of closely interacting aggregates of convective elements. The aggregates were about 20 km in diameter, attained echo tops of about 13 km, and were dominated by a single relatively intense convective element. The measured difference in radial velocity across the upper portion of these elements was about 20 m/s over a distance of about 10 km.

Knupp, Kevin R.↗
DOE OSTI2015

Crystal Structures and Small-angle X-ray Scattering Analysis of UDP-galactopyranose Mutase from the Pathogenic Fungus Aspergillus fumigatus

UDP-galactopyranose mutase (UGM) is a flavoenzyme that catalyzes the conversion of UDP-galactopyranose to UDP-galactofuranose, which is a central reaction in galactofuranose biosynthesis. Galactofuranose has never been found in humans but is an essential building block of the cell wall and extracellular matrix of many bacteria, fungi, and protozoa. The importance of UGM for the viability of many pathogens and its absence in humans make UGM a potential drug target. Here we report the first crystal structures and small-angle x-ray scattering data for UGM from the fungus Aspergillus fumigatus, the causative agent of aspergillosis. The structures reveal that Aspergillus UGM has several extra secondary and tertiary structural elements that are not found in bacterial UGMs yet are important for substrate recognition and oligomerization. Small-angle x-ray scattering data show that Aspergillus UGM forms a tetramer in solution, which is unprecedented for UGMs. The binding of UDP or the substrate induces profound conformational changes in the enzyme. Two loops on opposite sides of the active site move toward each other by over 10 {angstrom} to cover the substrate and create a closed active site. The degree of substrate-induced conformational change exceeds that of bacterial UGMs and is a direct consequence of the unique quaternary structure of Aspergillus UGM. Galactopyranose binds at the re face of the FAD isoalloxazine with the anomeric carbon atom poised for nucleophilic attack by the FAD N5 atom. The structural data provide new insight into substrate recognition and the catalytic mechanism and thus will aid inhibitor design.

Dhatwalia, Richa↗
DOE OSTI2015

Structural changes of small amplitude kinetic Alfvén solitary waves due to second-order corrections

The structural changes of kinetic Alfvén solitary waves (KASWs) due to higher-order terms are investigated. While the first-order differential equation for KASWs provides the dispersion relation for kinetic Alfvén waves, the second-order differential equation describes the structural changes of the solitary waves due to higher-order nonlinearity. The reductive perturbation method is used to obtain the second-order and third-order partial differential equations; then, Kodama and Taniuti's technique [J. Phys. Soc. Jpn. 45, 298 (1978)] is applied in order to remove the secularities in the third-order differential equations and derive a linear second-order inhomogeneous differential equation. The solution to this new second-order equation indicates that, as the amplitude increases, the hump-type Korteweg-de Vries solution is concentrated more around the center position of the soliton and that dip-type structures form near the two edges of the soliton. This result has a close relationship with the interpretation of the complex KASW structures observed in space with satellites.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2019

Structural evolutions of small aromatic mixtures under extreme temperature conditions: Insights from ReaxFF molecular dynamics investigations

Conversion mechanisms of carbonaceous materials during controlled pyrolysis under high temperature currently rely on empirical understanding, rather than a detailed atomistic description of the underlying chemical evolution. Here in this work, a series of molecular dynamics simulations, based on reactive force fields, were performed to probe the structural evolutions of small aromatic (number of aromatic rings ≤4) mixtures under extreme conditions (temperature 3000–4000 K). For any temperature studied and independent of the presence of alkane radicals, three major gas-phase byproducts, H 2 , C 2 H 2 , and C 2 H 4 , were found in bulk treated by rapid heating. Temperatures as well as alkane addition can affect the production/consumption rates and fractionation of these gas species. Compared to alkane radicals, temperatures also play important roles in modulating the initial growth pathways of solid carbon clusters. At 3000 K, aromatic carbon cluster formation is mainly initiated through the direct combination of aryl radicals. Conversely, at 4000K, carbon cluster formation is initiated by the assembly of chained radicals, since substantial polyacetylenic chains were produced. Through cross comparison on different simulation models/methods, as well as with experiments, the effect of processing conditions on carbonaceous materials conversion was revealed, and underlying mechanisms responsible for the observed phenomena are proposed.

36 MATERIALS SCIENCE↗
DOE OSTI2012

Model-based Approaches for the Determination of Lipid Bilayer Structure from Small-Angle Neutron and X-ray Scattering Data

Some of our recent work has resulted in the detailed structures of fully hydrated, fluid phase phosphatidylcholine (PC) and phosphatidylglycerol (PG) bilayers. These structures were obtained from the joint refinement of small-angle neutron and X-ray data using the scattering density profile (SDP) models developed by Ku erka et al. (Ku erka et al. 2012; Ku erka et al. 2008). In this review, we first discuss models for the standalone analysis of neutron or X-ray scattering data from bilayers, and assess the strengths and weaknesses inherent in these models. In particular, it is recognized that standalone data do not contain enough information to fully resolve the structure of inherently disordered fluid bilayers, and therefore may not provide a robust determination of bilayer structural parameters, including the much sought after area per lipid. We then discuss the development of matter density-based models (including the SDP model) that allow for the joint refinement of different contrast neutron and X-ray data sets, as well as the implementation of local volume conservation in the unit cell (i.e., ideal packing). Such models provide natural definitions of bilayer thicknesses (most importantly the hydrophobic and Luzzati thicknesses) in terms of Gibbs dividing surfaces, and thus allow for the robust determination of lipid areas through equivalent slab relationships between bilayer thickness and lipid volume. In the final section of this review, we discuss some of the significant findings/features pertaining to structures of PC and PG bilayers as determined from SDP model analyses.

Heberle, Frederick A↗
DOE OSTI2016

A PORTRAIT OF COLD GAS IN GALAXIES AT 60 pc RESOLUTION AND A SIMPLE METHOD TO TEST HYPOTHESES THAT LINK SMALL-SCALE ISM STRUCTURE TO GALAXY-SCALE PROCESSES

The cloud-scale density, velocity dispersion, and gravitational boundedness of the interstellar medium (ISM) vary within and among galaxies. In turbulent models, these properties play key roles in the ability of gas to form stars. New high-fidelity, high-resolution surveys offer the prospect to measure these quantities across galaxies. We present a simple approach to make such measurements and to test hypotheses that link small-scale gas structure to star formation and galactic environment. Our calculations capture the key physics of the Larson scaling relations, and we show good correspondence between our approach and a traditional “cloud properties” treatment. However, we argue that our method is preferable in many cases because of its simple, reproducible characterization of all emission. Using, low- J {sup 12}CO data from recent surveys, we characterize the molecular ISM at 60 pc resolution in the Antennae, the Large Magellanic Cloud (LMC), M31, M33, M51, and M74. We report the distributions of surface density, velocity dispersion, and gravitational boundedness at 60 pc scales and show galaxy-to-galaxy and intragalaxy variations in each. The distribution of flux as a function of surface density appears roughly lognormal with a 1 σ width of ∼0.3 dex, though the center of this distribution varies from galaxy to galaxy. The 60 pc resolution line width and molecular gas surface density correlate well, which is a fundamental behavior expected for virialized or free-falling gas. Varying the measurement scale for the LMC and M31, we show that the molecular ISM has higher surface densities, lower line widths, and more self-gravity at smaller scales.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2012

DISCOVERY OF SMALL-SCALE SPIRAL STRUCTURES IN THE DISK OF SAO 206462 (HD 135344B): IMPLICATIONS FOR THE PHYSICAL STATE OF THE DISK FROM SPIRAL DENSITY WAVE THEORY

We present high-resolution, H-band imaging observations, collected with Subaru/HiCIAO, of the scattered light from the transitional disk around SAO 206462 (HD 135344B). Although previous sub-mm imagery suggested the existence of a dust-depleted cavity at r {<=} 46 AU, our observations reveal the presence of scattered light components as close as 0.''2 ({approx} 28 AU) from the star. Moreover, we have discovered two small-scale spiral structures lying within 0.''5 ({approx} 70 AU). We present models for the spiral structures using the spiral density wave theory, and derive a disk aspect ratio of h {approx} 0.1, which is consistent with previous sub-mm observations. This model can potentially give estimates of the temperature and rotation profiles of the disk based on dynamical processes, independently from sub-mm observations. It also predicts the evolution of the spiral structures, which can be observable on timescales of 10-20 years, providing conclusive tests of the model. While we cannot uniquely identify the origin of these spirals, planets embedded in the disk may be capable of exciting the observed morphology. Assuming that this is the case, we can make predictions on the locations and, possibly, the masses of the unseen planets. Such planets may be detected by future multi-wavelength observations.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS2012

Discovery of Small-Scale Spiral Structures in the Disk of SAO 206462 (HD 135344B): Implications for the Physical State of the Disk from Spiral Density Wave Theory

We present high-resolution, H-band, imaging observations, collected with Subaru/HiCIAO, of the scattered light from the transitional disk around SAO 206462 (HD 135344B). Although previous sub-mm imagery suggested the existence of the dust-depleted cavity at r approximates 46 AU, our observations reveal the presence of scattered light components as close as 0".2 (approx 28 AU) from the star. Moreover, we have discovered two small-scale spiral structures lying within 0".5 (approx 70 AU). We present models for the spiral structures using the spiral density wave theory, and derive a disk aspect ratio of h approx 0.1, which is consistent with previous sub-mm observations. This model can potentially give estimates of the temperature and rotation profiles of the disk based on dynamical processes, independently from sub-mm observations. It also predicts the evolution of the spiral structures, which can be observable on timescales of 10-20 years, providing conclusive tests of the model. While we cannot uniquely identify the origin of these spirals, planets embedded in the disk may be capable of exciting the observed morphology. Assuming that this is the case, we can make predictions on the locations and, possibly, the masses of the unseen planets. Such planets may be detected by future multi-wavelengths observations.

Grady, C. A.↗
NASA NTRS2012

Discovery of Small-Scale Spiral Structures in the Disk of SAO 206462 (HD 135344B)(exp 1): Implications for the Physical State of the Disk from Spiral Density Wave Theory

We present high-resolution, H-band, imaging observations, collected with Subaru /HiCIAO, of the scattered light from the transitional disk around SAO 206462 (HD 1353448). Although previous sub-mm imagery suggested the existence of the dust-depleted cavity at r <= 46 AU, our observations reveal the presence of scattered light components as close as O".2 (approx 28 AU) from the star. Moreover , we have discovered two small-scale spiral structures lying within 0".5 (approx 70 AU). We present models for the spiral structures using the spiral density wave theory, and derive a disk aspect ratio of h approx. 0.1, which is consistent with previous sub-mm observations. This model can potentially give estimates of the temperature and rotation profiles of the disk based on dynamical processes. independently from sub-nun observations. It also predicts the evolution of the spiral structures, which can be observable on timescales of 10-20 years, providing conclusive tests of the model. While we cannot uniquely identify the origin of these spirals, planets embedded in the disk may be capable of exciting the observed morphology. Assuming that this is the case, we can make predictions on the locations and, possibly, the masses of the unseen planets. Such planets may be detected by future multi-wavelengths observations,

Muto, T.↗
DOE OSTI2014

Extremely small test cell structure for resistive random access memory element with removable bottom electrode

We established a method of preparing an extremely small memory cell by fabricating a resistive random access memory (ReRAM) structure on the tip of a cantilever of an atomic force microscope. This structure has the high robustness against the drift of the cantilever, and the effective cell size was estimated to be less than 10 nm in diameter due to the electric field concentration at the tip of the cantilever, which was confirmed using electric field simulation. The proposed structure, which has a removable bottom electrode, enables not only the preparation of a tiny ReRAM structure but also the performance of unique experiments, by making the most of its high robustness against the drift of the cantilever.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
NASA NTRS2011

Combined fast multipole-QR compression technique for solving electrically small to large structures for broadband applications

An approach that efficiently solves for a desired parameter of a system or device that can include both electrically large fast multipole method (FMM) elements, and electrically small QR elements. The system or device is setup as an oct-tree structure that can include regions of both the FMM type and the QR type. An iterative solver is then used to determine a first matrix vector product for any electrically large elements, and a second matrix vector product for any electrically small elements that are included in the structure. These matrix vector products for the electrically large elements and the electrically small elements are combined, and a net delta for a combination of the matrix vector products is determined. The iteration continues until a net delta is obtained that is within predefined limits. The matrix vector products that were last obtained are used to solve for the desired parameter.

Jandhyala, Vikram↗
DOE OSTI2010

Structure of the Small Outer Capsid Protein, Soc: A Clamp for Stabilizing Capsids of T4-like Phages

Many viruses need to stabilize their capsid structure against DNA pressure and for survival in hostile environments. The 9-kDa outer capsid protein (Soc) of bacteriophage T4, which stabilizes the virus, attaches to the capsid during the final stage of maturation. There are 870 Soc molecules that act as a 'glue' between neighboring hexameric capsomers, forming a 'cage' that stabilizes the T4 capsid against extremes of pH and temperature. Here we report a 1.9 {angstrom} resolution crystal structure of Soc from the bacteriophage RB69, a close relative of T4. The RB69 crystal structure and a homology model of T4 Soc were fitted into the cryoelectron microscopy reconstruction of the T4 capsid. This established the region of Soc that interacts with the major capsid protein and suggested a mechanism, verified by extensive mutational and biochemical studies, for stabilization of the capsid in which the Soc trimers act as clamps between neighboring capsomers. The results demonstrate the factors involved in stabilizing not only the capsids of T4-like bacteriophages but also many other virus capsids.

36 MATERIALS SCIENCE↗