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All sources NASA NTRS DOE OSTI

DOE OSTI2019

The combined force field-sampling problem in simulations of disordered amyloid-β peptides

Molecular dynamics simulations of intrinsically disordered proteins (IDPs) can provide high resolution structural ensembles if the force field is accurate enough and if the simulation sufficiently samples the conformational space of the IDP with the correct weighting of sub-populations. Here, we investigate the combined force field–sampling problem by testing a standard force field as well as newer fixed charge force fields, the latter specifically motivated for better description of unfolded states and IDPs, and comparing them with a standard temperature replica exchange (TREx) protocol and a non-equilibrium Temperature Cool Walking (TCW) sampling algorithm. The force field and sampling combinations are used to characterize the structural ensembles of the amyloid-beta peptides Aβ42 and Aβ43, which both should be random coils as shown recently by experimental nuclear magnetic resonance (NMR) and 2D Förster resonance energy transfer (FRET) experiments. The results illustrate the key importance of the sampling algorithm: while the standard force field using TREx is in poor agreement with the NMR J-coupling and nuclear Overhauser effect and 2D FRET data, when using the TCW method, the standard and optimized protein-water force field combinations are in very good agreement with the same experimental data since the TCW sampling method produces qualitatively different ensembles than TREx. Lastly, we also discuss the relative merit of the 2D FRET data when validating structural ensembles using the different force fields and sampling protocols investigated in this work for small IDPs such as the Aβ42 and Aβ43 peptides.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2019

Field theory and a structure-preserving geometric particle-in-cell algorithm for drift wave instability and turbulence

A field theory and the associated structure-preserving geometric particle-in-cell (PIC) algorithm are developed to study low frequency electrostatic perturbations with fully kinetic ions and adiabatic electrons in magnetized plasmas. The algorithm is constructed by geometrically discretizing the field theory using discrete exterior calculus, high-order Whitney interpolation forms, and non-canonical Hamiltonian splitting method. The discretization preserves the non-canonical symplectic structure of the particle-field system, as well as the electromagnetic gauge symmetry. As a result, the algorithm is charge-conserving and possesses long-term conservation properties. Because drift wave turbulence and anomalous transport intrinsically involve multi time-scales, simulation studies using fully kinetic particles demand algorithms with long-term accuracy and fidelity. The structure-preserving geometric PIC algorithm developed adequately serves this purpose. The algorithm has been implemented in the code, tested and benchmarked using the examples of ion Bernstein waves and drift waves. We apply the algorithm to study the ion temperature gradient (ITG) instability and turbulence in a 2D slab geometry. Simulation results show that at the early stage of the turbulence, the energy diffusion is between the Bohm scaling and gyro-Bohm scaling. Finally, at later time, the observed diffusion is closer to the gyro-Bohm scaling, and density blobs generated by the rupture of unstable modes are the prominent structures of the fully developed ITG turbulence.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2022

Training neural networks using Metropolis Monte Carlo and an adaptive variant

Abstract We examine the zero-temperature Metropolis Monte Carlo (MC) algorithm as a tool for training a neural network by minimizing a loss function. We find that, as expected on theoretical grounds and shown empirically by other authors, Metropolis MC can train a neural net with an accuracy comparable to that of gradient descent (GD), if not necessarily as quickly. The Metropolis algorithm does not fail automatically when the number of parameters of a neural network is large. It can fail when a neural network’s structure or neuron activations are strongly heterogenous, and we introduce an adaptive Monte Carlo algorithm (aMC) to overcome these limitations. The intrinsic stochasticity and numerical stability of the MC method allow aMC to train deep neural networks and recurrent neural networks in which the gradient is too small or too large to allow training by GD. MC methods offer a complement to gradient-based methods for training neural networks, allowing access to a distinct set of network architectures and principles.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Towards Quantum Computing Phase Diagrams of Gauge Theories with Thermal Pure Quantum States

The phase diagram of strong interactions in nature at finite temperature and chemical potential remains largely theoretically unexplored due to inadequacy of Monte-Carlo–based computational techniques in overcoming a sign problem. Quantum computing offers a sign-problem-free approach, but evaluating thermal expectation values is generally resource intensive on quantum computers. To facilitate thermodynamic studies of gauge theories, we propose a generalization of the thermal-pure-quantum-state formulation of statistical mechanics applied to constrained gauge-theory dynamics, and numerically demonstrate that the phase diagram of a simple low-dimensional gauge theory is robustly determined using this approach, including mapping a chiral phase transition in the model at finite temperature and chemical potential. Quantum algorithms, resource requirements, and algorithmic and hardware error analysis are further discussed to motivate future implementations. Thermal pure quantum states, therefore, may present a suitable candidate for efficient thermal simulations of gauge theories in the era of quantum computing.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2022

Applying Infrared Thermography as a Method for Online Monitoring of Turbine Blade Coolant Flow

As gas turbine engine manufacturers strive to implement condition-based operation and maintenance, there is a need for blade monitoring strategies capable of early fault detection and root-cause determination. Given the importance of blade cooling flows to turbine blade health and longevity, there is a distinct lack of methodologies for coolant flowrate monitoring. The present study addresses this identified opportunity by applying an infrared thermography system on an engine-representative research turbine to generate data-driven models for prediction of blade coolant flowrate. Thermal images were used as inputs to a linear regression and regularization algorithm to relate blade surface temperature distribution with blade coolant flowrate. Additionally, this study investigates how coolant flowrate prediction accuracy is influenced by the number and breadth of diagnostic measurements. Here, the results of this study indicate that a source of high-fidelity training data can be used to predict blade coolant flowrate within about six percent error. Furthermore, identification of prioritized sensor placement supports application of this technique across multiple sensor technologies capable of measuring blade surface temperature in operating gas turbine engines, including spatially resolved and point-based measurement techniques.

42 ENGINEERING↗

DOE OSTI2019

BuildingIQ Technology Field Validation

This document describes a field validation and verification of the BuildingIQ Predictive Energy Optimization (PEO) technology based on a five-site study. BuildingIQ describes its PEO technology as a software-as-a-service (SaaS) platform that optimizes commercial building HVAC control for system efficiency, occupant comfort, and cost. It is targeted for use in large, complex buildings, and integrates with the building automation system (BAS) to conduct supervisory control. The PEO algorithm defines optimal space air temperature setpoints that are automatically implemented at the variable air volume (VAV) terminal units when possible, or through supply air temperature and duct static pressure setpoints at the air handling unit (AHU) level. The optimization is built upon a learned predictive model that provides a 24-hour ahead forecast of the building’s power profile, using weather forecasts and historical operational data; this model is updated every 4 to 6 hours. Demand-responsive load reductions may also be implemented.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2018

BuildingIQ Technology Field Validation

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2020

NRC Multiphysics Analysis Capability Deployment (FY2021--Part 1)

This report details progress and activities of Idaho National Laboratory (INL) on the Nuclear Regulatory Commission (NRC) project “Development and Modeling Support for Advanced Non-Light Water Reactors.” The tasks completed for this report are as follows: First, Task 1d: The net radiation transfer method was implemented into MOOSE for modeling reactor cavity cooling system geometries. RCCS models for two experiments were created: (1) Natural Convection Shutdown Heat Removal Test Facility (NSTF) experiment R022, and (2) HTTR VCS mockup. For validation, computed temperature distributions were compared to measured temperatures. Next, Task 4c: An algorithm for computing the pebble bed reactor equilibrium core isotopic com-position was developed and an initial version is implemented into the reactor multi-physics code Griffin. Initial results for a simplified axisymmetric pebble bed reactor are presented. Finally, Task 7: generation of a reference plant model for molten salt cooled pebble bed reactor.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2021

A high-resolution unified observational data product of mesoscale convective systems and isolated deep convection in the United States for 2004–2017

Deep convection possesses markedly distinct properties at different spatiotemporal scales. We present an original high-resolution (4 km, hourly) unified data product of mesoscale convective systems (MCSs) and isolated deep convection (IDC) in the United States east of the Rocky Mountains and examine their climatological characteristics from 2004 to 2017. The data product is produced by applying an updated Flexible Object Tracker algorithm to hourly satellite brightness temperature, radar reflectivity, and precipitation datasets. Analysis of the data product shows that MCSs are much larger and longer-lasting than IDC, but IDC occurs about 100 times more frequently than MCSs, with a mean convective intensity comparable to that of MCSs. Hence both MCS and IDC are essential contributors to precipitation east of the Rocky Mountains, although their precipitation shows significantly different spatiotemporal characteristics. IDC precipitation concentrates in summer in the Southeast with a peak in the late afternoon, while MCS precipitation is significant in all seasons, especially for spring and summer in the Great Plains. The spatial distribution of MCS precipitation amounts varies by season, while diurnally, MCS precipitation generally peaks during nighttime except in the Southeast. Potential uncertainties and limitations of the data product are also discussed. The data product is useful for investigating the atmospheric environments and physical processes associated with different types of convective systems; quantifying the impacts of convection on hydrology, atmospheric chemistry, and severe weather events; and evaluating and improving the representation of convective processes in weather and climate models.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1989

The development of an explicit thermochemical nonequilibrium algorithm and its application to compute three dimensional AFE flowfields

This study presents a three-dimensional explicit, finite-difference, shock-capturing numerical algorithm applied to viscous hypersonic flows in thermochemical nonequilibrium. The algorithm employs a two-temperature physical model. Equations governing the finite-rate chemical reactions are fully-coupled to the gas dynamic equations using a novel coupling technique. The new coupling method maintains stability in the explicit, finite-rate formulation while allowing relatively large global time steps. The code uses flux-vector accuracy. Comparisons with experimental data and other numerical computations verify the accuracy of the present method. The code is used to compute the three-dimensional flowfield over the Aeroassist Flight Experiment (AFE) vehicle at one of its trajectory points.

Palmer, Grant↗

NASA NTRS1993

Numerical model for the Programmable Multirole Furnace (PMZF)

The present account of the Programmable Multizone Furnace numerical model uses various examples to illustrate the ways in which the model serves as an optimization, test, prediction, and visualization tool; a numerical PID-control algorithm obtains the desired sample temperature distributions and allows the model to solve an inverse heat transfer problem where the desired sample temperature profile is the input and the required heater power distribution is the output of numerical simulations. Parametric studies show how the total power consumption of the furnace is affected by such design variables as the conductivity.

Kassemi, M.↗

NASA NTRS1993

Mineralogic variability of the Kelso Dunes, Mojave Desert, California derived from Thermal Infrared Multispectral Scanner (TIMS) data

Mineral identification and mapping of alluvial material using thermal infrared (TIR) remote sensing is extremely useful for tracking sediment transport, assessing the degree of weathering and locating sediment sources. As a result of the linear relation between a mineral's percentage in a given area (image pixel) and the depth of its diagnostic spectral features, TIR spectra can be deconvolved in order to ascertain mineralogic percentages. Typical complications such as vegetation, particle size and thermal shadowing are minimized upon examination of dunes. Actively saltating dunes contain little to no vegetation, are very well sorted and lack the thermal shadows that arise from rocky terrain. The primary focus of this work was to use the Kelso Dunes as a test location for an accuracy analysis of temperature/emissivity separation and linear unmixing algorithms. Accurate determination of ground temperature and component discrimination will become key products of future ASTER data. A decorrelation stretch of the TIMS image showed clear color variations within the active dunes. Samples collected from these color units were analyzed for mineralogy, grain size, and separated into endmembers. This analysis not only revealed that the dunes contained significant mineralogic variation, but were more immature (low quartz percentage) than previously reported. Unmixing of the TIMS data using the primary mineral endmembers produced unique variations within the dunes and may indicate near, rather than far, source locales for the dunes. The Kelso Dunes lie in the eastern Mojave Desert, California, approximately 95 km west of the Colorado River. The primary dune field is contained within a topographic basin bounded by the Providence, Granite Mountains, with the active region marked by three northeast trending linear ridges. Although active, the dunes appear to lie at an opposing regional wind boundary which produces little net movement of the crests. Previous studies have estimated the dunes range from 70% to 90% quartz mainly derived from a source 40 km to the west. The dune field is assumed to have formed in a much more arid climate than present, with the age of the deposit estimated at greater than 100,000 years.

Ramsey, Michael S.↗

NASA NTRS1994

Rapid computation of spectrally integrated non-local thermodynamic equilibrium limb emission

The interpretation of infrared radiance measurements made by satellite-borne limb-scanning broadband radiometers requires accurate and computationally fast techniques with which to evaluate the equation of radiative transfer. This requirement is made even more stringent when analyzing measurements of non-local thermodynamic equilibrium (non-LTE) emission from the terrestrial mesosphere and lower thermosphere. In principle, line-by-line calculations which explicitly account for the departure from thermodynamic equilibrium in both the source functions and the transmittances are necessary. In this paper we extend the emissivity growth approximation (EGA) technique developed for local thermodynamic equilibrium (LTE) limb radiance for the molecular oxygen dayglow (1.27 micrometers and 762 nm), ozone and carbon dioxide in the 9- to 11-micrometer spectral interval, carbon monoxide (4.6 micrometers), nitric oxide (5.3 micrometers), and the carbon dioxide bands (15 micrometers) are presented. Using the non-LTE form of the EGA, the spectrally integrated limb emission is calculated for 35 tangent heights in the mesosphere and lower thermosphere (a total of 1200 atmospheric layers) with line-by-line accuracy in approximately 0.35 s of CPU time on readily available desktop computer hardware, while the corresponding line-by-line calculations may require several minutes. The non-LTE EGA technique will allow kinetic temperature and minor constituend retrieval algorithms to readily include non-LTE efects limited only by the a priori knowledge of the departure from LTE in the observed bands.

Mlynczak, Martin G.↗

NASA NTRS1996

Modeling Global Biogenic Emission of Isoprene: Exploration of Model Drivers

Vegetation provides the major source of isoprene emission to the atmosphere. We present a modeling approach to estimate global biogenic isoprene emission. The isoprene flux model is linked to a process-based computer simulation model of biogenic trace-gas fluxes that operates on scales that link regional and global data sets and ecosystem nutrient transformations Isoprene emission estimates are determined from estimates of ecosystem specific biomass, emission factors, and algorithms based on light and temperature. Our approach differs from an existing modeling framework by including the process-based global model for terrestrial ecosystem production, satellite derived ecosystem classification, and isoprene emission measurements from a tropical deciduous forest. We explore the sensitivity of model estimates to input parameters. The resulting emission products from the global 1 degree x 1 degree coverage provided by the satellite datasets and the process model allow flux estimations across large spatial scales and enable direct linkage to atmospheric models of trace-gas transport and transformation.

Alexander, Susan E.↗

NASA NTRS2012

High-Precision Temperature Control of a Crystal Growth Furnace at 1,500 C

For crystal growth of semiconductor materials a short-term temperature stability of 0.1 C at 1500 C is one of the essential parameters to be addressed for achieving high-quality crystals. Hence, for temperature monitoring and control with high precision in a floating zone furnace two sets of thermo-sensors, type B thermocouples and optical fibre thermometers, have been implemented and successfully operated in the furnace for more than 2000 h. The optical fibre thermometers consist of an optical system made of sapphire (two fibres plus a prism in between for deflection) and transmit the infra-red radiation of the heater to the outside of the hot core of the furnace for pyrometric temperature measurement. A dedicated control algorithm has been set up which controlled the power settings to the individual heaters. Both sensor types showed no degradation after this period and yielded a short-term stability at 1200 C of 0.05 C (optical fibre thermometers), respectively 0.08 C (thermocouples).

Stenzel, Ch.↗

NASA NTRS2024

Applications of Remote Sensing for Land Use Planning Scenarios with Suitability Analysis

In regions undergoing rapid urbanization, such as West Africa, land use planning (LUP) is vital to accommodate growing population and manage natural resources. Suitability analysis modeling is a widely used tool in LUP to determine the extent to which a land area is suitable for a designated purpose, but there is a gap in the integration of remote sensing time series data into land use decisions. The goal of this study was to incorporate remote sensing time series information with suitability analyses to inform LUP decisions in urban areas. In the study area of Kumasi, Ghana, land cover trends and land surface temperature (LST) from 2000 to 2019 were used to understand climate change trends. Suitability analyses determined the fitness of land areas for predetermined uses. These background processes informed a genetic algorithm to project plausible futures for three land use scenarios. One scenario represented current land use planning practices for addressing population growth, another scenario prioritized minimizing climate change impacts while also accommodating population growth, and the final scenario focused on both of these climate and population goals in addition to high density urban development. Each of these scenarios was successful in achieving population accommodation and respective climate change mitigation goals. The results for these scenarios provide insight into plausible land use distributions in 2050 based on different planning approaches. The genetic algorithm was able to effectively develop results for each scenario through the integration of remotely sensed trends and suitability models, providing a novel approach to land use decision-making.

remote sensing time series↗

NASA NTRSDate not supplied

Remote Sensing of Atmospheric Temperature, Water Vapor, Trace Gases, Cloud, and Surface Properties on Daily and Decadal Time Scales

Hyperspectral IR sounders such as AIRS on Aqua, CrIS on S-NPP, NOAA20 and JPSS-2, IASI on Metop A, B, and C provide high-quality atmospheric temperature, water, vapor, and greenhouse gas vertical profiles. Additionally, they provide atmospheric cloud properties, surface emissivity, and surface skin temperatures. We have developed two algorithms which can consistently derive these products from multiple IR sounders. The first one is a Single Field-of-view Sounder Atmospheric Product (SIFSAP) algorithm and the second one is a Climate Fingerprinting Sounder Product (ClimFiSP) algorithm. The SiFSAP algorithm performs one retrieval for each FOV using an all-sky optimal estimation approach. The core of the SiFSAP algorithm is an accurate and fast Principal Component-based Radiative Transfer Model (PCRTM), which can calculate hyperspectral radiance spectra under both clear and cloudy conditions. The PCRTM was developed in the past decade using consistent reference line-by-line radiative transfer model and spectroscopy for hyperspectral sounders such as AIRS, CrIS, IASI, NAST-I, and S-HIS. The ClimFiSP algorithm, which performs retrievals from spatiotemporally averaged L1 hyperspectral radiances directly, will be orders of magnitude faster than traditional method. he ClimFiSP algorithm uses consistent radiative kernels and a robust spectral fingerprinting method. It provides accurate data climate data fusion products from multiple satellite sensors. Both SiFSAP and ClimFiSP will be available at NASA GES DISC data center for public access.

Xu Liu↗

DOE OSTI2021

Developing a Drilling Optimization System for Improved Overall Rate of Penetration in Geothermal Wells

Geothermal energy is renewable, reliable and environmentally friendly source of energy. The major cost in the development of geothermal wells is the actual drilling of the wells. The main objective of this paper is to introduce a new real-time drilling optimization system designed for granite formation to reduce the overall drilling cost. In this study, a drilling optimization system is verified using drilling data from Utah-Forge well 58-32. The drilling optimization system used the Utah-Forge well 58-32 data to achieve real-time unconfined compressive strength (UCS). Based on the UCS value from the previous feet, the system simulates the ROP for the next drilling feet. The drilling optimization system utilizes the Differential Evolution Algorithm (DEA), which is a metaheuristic method to search the space of solution, to find the best operating parameters (i.e. WOB and RPM) for the next drilling foot. The optimization algorithm takes a maximum cutter temperature into account as a constraint and avoids the accelerated wear. The developed drilling optimization system improves ROP responses and reduces the drilling cost of geothermal wells. The simulated ROP results from the system show a good agreement with the ROP from Utah-Forge well 58-32 drilling data. The drilling time before and after optimization for both intervals were presented.

15 GEOTHERMAL ENERGY↗