Genetic and microbial determinants of azoxymethane-induced colorectal tumor susceptibility in Collaborative Cross mice and their implication in human cancer
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59 BASIC BIOLOGICAL SCIENCES↗
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Results for “Association study”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Harmonic generation in a terawatt x-ray free-electron laser
Abstract Terawatt x-ray free-electron lasers (XFELs) represent the frontier in further development of x-ray sources and require high current densities with strong transverse focusing. In this paper, we investigate the implications/potentialities of TW XFELs on the generation of harmonics at still shorter wavelengths and higher photon energies. The simulations indicate that significant power levels are possible at high harmonics of the XFEL resonance and that these XFELs can be an important coherent source of hard x-rays through the gamma ray spectrum. For this purpose, we use the MINERVA simulation code which self-consistently includes harmonic generation. Both helical and planar undulators are discussed in which the fundamental is at 1.5 Å and study the associated harmonic generation. While tapered undulators are needed to reach TW powers at the fundamental, the taper does not enhance the harmonics because the taper must start before saturation of the fundamental, while the harmonics saturate before this point is reached. Nevertheless, the harmonics reach substantial powers. Simulations indicate that, for the parameters under consideration, peak powers of the order of 180 MW are possible at the fifth harmonic with a photon energy of about 41 keV and still high harmonics may also be generated at substantial powers. Such high harmonic powers are certain to enable a host of enhanced applications.
Physics↗
Simulation study of fast ion losses associated with the rotating n = 1 resonant magnetic perturbations in KSTAR
In this work we describe a simulation framework for testing the fast ion loss mechanism associated with the experimentally observed beam ion losses when an externally applied toroidally rotating perturbed magnetic field is used to control edge localized modes in the KSTAR tokamak. The simulations reproduce the key qualitative features of neutral beam injection (NBI) ion detection by a fast ion loss detector. The NBI ion losses in the simulation mainly occur for passing particles due to orbit stochastization, which is caused by orbit resonance with the 3D field perturbations. The relative toroidal angle of NBI ion deposition to the orbit island determines the radial path of the particles between confinement or loss. The fast ion loss quantity depends on the toroidal angle rotation of the 3D field with respect to the beam deposition position. The averaged transport of toroidal canonical angular momentum reveals that linear and nonlinear resonance of the NBI ions within the 3D field are the main factors determining fast ion transport and loss.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Commissioning plan for LCLS II 2 K cold box
Commissioning of the LCLS II cryogenic plant has been planned with respect to electrical and mechanical systems checkout, equipment cleanup, cool-down, and individual performance evaluation. This plant consists of warm and cold storage, helium compressors, 4.5 K and 2 K cold boxes, and all auxiliaries typical for helium refrigeration processes. The 2 K cold box, consisting of five cold compressors in series to produce the flow and pressures necessary for 2K operation, will be the last equipment installed and, along with an additional 10,000 L helium dewar, will allow the entire plant to be commissioned as a single entity. The pre-commissioning stages, commissioning plan for 2 K cold box without connecting to the LCLS II LINAC, additional test equipment needed to simulate the loads, all process studies and associated results are described herein.
36 MATERIALS SCIENCE↗
Stellar population analysis of MaNGA early-type galaxies: IMF dependence and systematic effects
We study systematics associated with estimating simple stellar population (SSP) parameters – age, metallicity [M/H], α-enhancement [α/Fe], and initial mass function (IMF) shape – and associated M * /L gradients, of elliptical slow rotators (E-SRs), fast rotators (E-FRs), and S0s from stacked spectra of galaxies in the MaNGA survey. These systematics arise from (i) how one normalizes the spectra when stacking; (ii) having to subtract emission before estimating absorption line strengths; (iii) the decision to fit the whole spectrum or just a few absorption lines; (iv) SSP model differences (e.g. isochrones, enrichment, IMF). The MILES+Padova SSP models, fit to the H β , 〈Fe〉, TiO 2SDSS , and [MgFe] Lick indices in the stacks, indicate that out to the half-light radius R e : (a) ages are younger and [α/Fe] values are lower in the central regions but the opposite is true of [M/H]; (b) the IMF is more bottom-heavy in the center, but is close to Kroupa beyond about R e /2; (c) this makes M * /L about 2 × larger in the central regions than beyond R e /2. While the models of Conroy et al. return similar [M/H] and [α/Fe] profiles, the age and (hence) M * /L profiles can differ significantly even for solar abundances and a Kroupa IMF; different responses to non-solar abundances and IMF parametrization further compound these differences. There are clear (model independent) differences between E-SRs, E-FRs, and S0s: younger ages and less enhanced [α/Fe] values suggest that E-FRs and S0s are not SSPs, but relaxing this assumption is unlikely to change their inferred M * /L gradients significantly.
79 ASTRONOMY AND ASTROPHYSICS↗
Dirty bosons on the Cayley tree: Bose-Einstein condensation versus ergodicity breaking
Building on large-scale quantum Monte Carlo simulations, we investigate the zero-temperature phase diagram of hard-core bosons in a random potential on site-centered Cayley trees with branching number K=2. In order to follow how the Bose-Einstein condensate (BEC) is affected by the disorder, we focus on both the zero-momentum density, probing the quantum coherence, and the one-body density matrix (1BDM) whose largest eigenvalue monitors the off-diagonal long-range order. We further study its associated eigenstate which brings useful information about the real-space properties of this leading eigenmode. Upon increasing randomness, we find that the system undergoes a quantum phase transition at finite disorder strength between a long-range ordered BEC state, fully ergodic at large scale, and a new disordered Bose glass regime showing conventional localization for the coherence fraction while the 1BDM displays a nontrivial algebraic vanishing BEC density together with a nonergodic occupation in real space. These peculiar properties can be analytically captured by a simple phenomenological description on the Cayley tree which provides a physical picture of the Bose glass regime.
36 MATERIALS SCIENCE↗
Use of diamond sensors for a high-flux, high-rate X-ray pass-through diagnostic
X-ray free-electron lasers (XFELs) deliver pulses of coherent X-rays on the femtosecond time scale, with potentially high repetition rates. While XFELs provide high peak intensities, both the intensity and the centroid of the beam fluctuate strongly on a pulse-to-pulse basis, motivating high-rate beam diagnostics that operate over a large dynamic range. The fast drift velocity, low X-ray absorption and high radiation tolerance properties of chemical vapour deposition diamonds make these crystals a promising candidate material for developing a fast (multi-GHz) pass-through diagnostic for the next generation of XFELs. A new approach to the design of a diamond sensor signal path is presented, along with associated characterization studies performed in the XPP endstation of the LINAC Coherent Light Source (LCLS) at SLAC. Qualitative charge collection profiles (collected charge versus time) are presented and compared with those from a commercially available detector. Quantitative results on the charge collection efficiency and signal collection times are presented over a range of approximately four orders of magnitude in the generated electron–hole plasma density.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Sorghum Association Panel whole‐genome sequencing establishes cornerstone resource for dissecting genomic diversity
SUMMARY Association mapping panels represent foundational resources for understanding the genetic basis of phenotypic diversity and serve to advance plant breeding by exploring genetic variation across diverse accessions. We report the whole‐genome sequencing (WGS) of 400 sorghum ( Sorghum bicolor (L.) Moench) accessions from the Sorghum Association Panel (SAP) at an average coverage of 38× (25–72×), enabling the development of a high‐density genomic marker set of 43 983 694 variants including single‐nucleotide polymorphisms (approximately 38 million), insertions/deletions (indels) (approximately 5 million), and copy number variants (CNVs) (approximately 170 000). We observe slightly more deletions among indels and a much higher prevalence of deletions among CNVs compared to insertions. This new marker set enabled the identification of several novel putative genomic associations for plant height and tannin content, which were not identified when using previous lower‐density marker sets. WGS identified and scored variants in 5‐kb bins where available genotyping‐by‐sequencing (GBS) data captured no variants, with half of all bins in the genome falling into this category. The predictive ability of genomic best unbiased linear predictor (GBLUP) models was increased by an average of 30% by using WGS markers rather than GBS markers. We identified 18 selection peaks across subpopulations that formed due to evolutionary divergence during domestication, and we found six F st peaks resulting from comparisons between converted lines and breeding lines within the SAP that were distinct from the peaks associated with historic selection. This population has served and continues to serve as a significant public resource for sorghum research and demonstrates the value of improving upon existing genomic resources.
59 BASIC BIOLOGICAL SCIENCES↗
Opportunities and Challenges in Passive Thermal-Fluid and Energy Systems
Abstract This article focuses on passive systems that are used in energy and thermal-fluid applications. These passive systems do not have moving parts and are reliable and cost-effective. Fluid motion in these passive devices could be driven by capillary force, gravity, osmotic pressure, and/or concentration gradient. The fundamental mechanisms and limitations of transport phenomena for passive systems are highlighted, followed by their applications in heat pipes, fuel cells, thermal energy storage, and desalination systems. The capabilities of the passive systems are limited by the balance between the driving force and transport resistance. Based on the fundamental understanding of fluid flow and phase change in passive systems, this study proposes associated transport phenomena and quantitative criteria to determine the maximum heat transfer rate, the transport distance, and minimum pore size of wick structures (when relevant) in these passive devices. This article concludes with the discussion of challenges and future opportunities of passive systems.
Engineering↗
Progress and challenges in small systems
We present a comprehensive review of the theoretical and experimental progress in the investigation of novel high-temperature quantum chromodynamics phenomena in small systems at both the Relativistic Heavy Ion Collider and the Large Hadron Collider. We highlight the challenges and opportunities associated with studying small systems, by which we generally mean collision systems that involve at least one light ion or even a photon projectile. Here, we discuss perspectives on possible future research directions to better understand the underlying physics at work in the collisions of small systems.
collective behavior↗
Progress and challenges in small systems
Here, we present a comprehensive review of the theoretical and experimental progress in the investigation of novel high-temperature quantum chromodynamics phenomena in small systems at both the Relativistic Heavy Ion Collider and the Large Hadron Collider. We highlight the challenges and opportunities associated with studying small systems, by which we generally mean collision systems that involve at least one light ion or even a photon projectile. We discuss perspectives on possible future research directions to better understand the underlying physics at work in the collisions of small systems.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Mitigating the Psychological Harm from Actinide Intakes [Slides]
This report provides an overview of actinide intakes, case studies and associated psychological challenges and concerns. It also details ways to mitigate harm before and following an intake.
61 RADIATION PROTECTION AND DOSIMETRY↗
High Performance Ionene Architectures for Membrane Separations (Final Technical Report)
Our DOE BES research grant (DE-SC0018181, 8/15/17-2/28/22) focused on the synthesis, characterization, and performance of a new class of polymers known as high-performance (HP)-ionenes as gas separation membranes, including associated computational studies. This research resulted in 11 peer-reviewed journal publications with an additional ~7 manuscripts currently in review or under preparation for submission. This DOE BES funding has also resulted in 3 U.S. patent applications.
36 MATERIALS SCIENCE↗
Improved Methods for Modeling Functional Transition Metal Compounds in Complex Environments: Ground States, Excited States, and Spectroscopies
Rapid advances in energy applications require new theory and computational models to provide guidance for interpretation of experimental results and mechanistic understanding. New theory development is necessary to treat systems of increasing complexity, size, and relevance to real applications. Functional transition metal compounds, including molecules, clusters, nanoparticles, surfaces, and solids, provide particular promise for magnetic, optical, and catalytic applications. However, such systems can be exceptionally challenging to model. To make progress in understanding and designing transition metal compounds for energy applications, theory must be able to simulate such systems in complex environments, as well as simulate the spectra of such complex systems to provide direct connections with experiment. Leveraging the independent expertise of the team’s members, this project aimed to make inroads to the theoretical and computational challenges associated with studying transition metal compounds, their reaction chemistry, photophysics and photochemistry, and response to spectroscopic interrogation.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Enriched Background Isotope Study (EBIS): Analysis of 14C-Enriched Carbon Cycle in Soils and Litter at Forested Oak Ridge and AmeriFlux Sites, 2001-2011
These data provide a record of the multi-year, multi-institutional Enriched Background Isotope Studies (EBIS) projects that ran from 2000 through 2011. Elevated levels of 14C enriched CO2 in the air and soil atmosphere as well as leaf, stem, and root tissues were observed on the Oak Ridge Reservations (ORR) during the summer of 1999, and were attributed to local incinerator activities on and/or near the ORR (Trumbore et al. 2002). The isolated enrichment of the background levels of 14C in local forest ecosystem represented a unique opportunity to study unresolved carbon cycling processes such as the contribution of leaf versus root litter contributions to soil carbon accumulation, the rate of vertical transport of carbon into deep soil storage pools, and the differential contribution of physicochemical versus faunal driven processes to soil carbon cycling and sequestration. Leaf litter from the local enriched forest was transplanted to selected sites on the ORR and to selected AmeriFlux study sites to study soil C cycling across a range of soils and climates. The EBIS research projects provide data on C flux from litter sources to mineral soil sinks for United States eastern hardwood forests necessary for testing process hypotheses and judging efficacy of soil C cycling models. Experimental results from this study are being used to parameterize and refine existing carbon dynamics models, the quantification of the long-term fate of ecosystem carbon inputs and as a means to judge the potential for ecosystem carbon sequestration via enhance litter inputs to soil. EBIS observations support conclusions that intra- and inter-annual soil carbon cycling in hardwood forest soils should be characterized as a least a two-compartment system where surface leaf-litter and belowground root turnover represent primary carbon sources for organic-layer and mineral-soil carbon cycles, respectively. EBIS experiments were conducted to complete enriched litterfall maniplations in upland forests on Ultisol and Inceptisol soils of the Oak Ridge Reservation, Oak Ridge, Tennessee. We also collected additional14C-enriched materials for new experimental applications, and applied those materials to multiple AmeriFlux sites over a range of climatic, edaphic and biological conditions. The research provided data for addressing DOE's goal of understanding mechanisms controlling C flux, and for the improvement of models to be applied to policy discussions regarding the safe levels of greenhouse gases for the earth's system. There are 5 data files provided in comma separated (*.csv) format for vegetation, field litter, soil and air [C] and C isotope data from the EBIS studies and associated environmental data.
54 ENVIRONMENTAL SCIENCES↗
Biofuels Induced Land Use Change Emissions: The Role of Implemented Land Use Emission Factors
Biofuels’ induced land-use change (ILUC) emissions have been widely studied over the past 15 years. Many studies have addressed uncertainties associated with these estimates. These studies have broadly examined uncertainties associated with the choice of economic models, their assumptions and parameters, and a few bio-physical variables. However, uncertainties in land-use emission factors that represent the soil and vegetation carbon contents of various land types across the world and are used to estimate carbon fluxes due to land conversions are mostly overlooked. This paper calls attention to this important omission. It highlights some important sources of uncertainty in land-use emissions factors, explores the range in these factors from established data sources, and compares the influence of their variability on ILUC emissions for several sustainable aviation fuel (SAF) pathways. The estimated land-use changes for each pathway are taken from a well-known computable general equilibrium model, GTAP-BIO. Two well-known carbon calculator models (CCLUB and AEZ-EF) that represent two different sets of emissions factors are used to convert the GTAP-BIO estimated land-use changes to ILUC emissions. The results show that the calculated ILUC emissions obtained from these carbon calculators for each examined SAF pathway are largely different, even for the same amortization time horizon. For example, the ILUC emissions values obtained from the AEZ-EF and CCLUB models for producing jet fuel from corn ethanol for a 25-year amortization period are 24.9 gCO 2 e/MJ and 15.96 gCO 2 e/MJ, respectively. This represents a 60% difference between the results of these two carbon calculators for the same set of land-use changes. The results show larger differences for other pathways as well.
09 BIOMASS FUELS↗
Princeton advanced satellite study. Volume II - General problems associated with spaceborne telescopes
Design concepts and materials evaluation for large aperture astronomical satellite telescope
STRUCTURAL DESIGN↗
Princeton advanced satellite study. Volume IV - OAO/APEP in association with AAP
Orbiting astronomical laboratory with 40-inch, diffraction-limited, Cassegrain telescope for visible and ultraviolet spectral analyses
SPECTROSCOPIC TELESCOPE↗