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This report provides basic background data on the Manipulate-2020 code. This code is used for processing and "manipulation" of nuclear data in support of radiation metrology applications. The code is made available on the open GitHub repository and is available to the general nuclear data community.
The CEED co-design center is developing a number of kernels, bake-off / benchmark problems (BPs) and mini-applications (miniapps) that capture the unique requirements of high-order finite element algorithms and use them to influence standards, best practices and vendors to generate more portable, better performing code across diverse hardware designs. This is a main activity in CEED’s Hardware, Applications and Finite Element thrusts. CEED’s miniapps, a.k.a. CEEDlings, are small, standalone applications - surrogates for sub-components of interest from the selected first wave of applications (the MARBL/LLNLApp and ExaSMR projects). The BPs are even smaller standalone programs that solve a simple physical problem, including discretization, linear and/or nonlinear solve, and potentially a relatively small number of time steps. A BP may be a proxy/surrogate for part of a miniapp or another problem of general interest. In CEED, both miniapps and BPs will be used extensively in the project to evaluate and compare the performance of algorithms in specific contexts. The parts of the miniapps and BPs that play an important role in their overall performance will be identified and separated as standalone kernels. These kernels and their interaction inside BPs, miniapps and the actual applications, will be the main focus of our optimization efforts. All three standalone pieces of software (miniapps, BPs, and kernels) will serve as a basis for engaging and collaborating with hardware vendors and software technologies (ST) projects. These partners can start at the bottom of the hierarchy, e.g. with the kernels, and easily transition to BPs and miniapps as all three families will be produced in the same CEED environment. In this milestone we identified the initial kernels, bake-off problems and miniapps and delivered software and documentation for them through the new CEED website, http://ceed.exascaleproject.org. We specifically identified the Nekbone miniapp for the ExaSMR application and developed a new miniapp, Laghos, for the MARBL/LLNLApp application. We also formulated four initial benchmark problems (BP1- BP4) with clearly defined performance metrics and performed an initial bake-off comparison between the Nek5000 (spectral element) and MFEM (high-order finite element) technologies. As part of the milestone, we also engaged vendors (AMD) and ST projects (MPICH, STRUMPACK). In this document we are reporting some details and results from these R&D activities, as well as additional project-wide activities performed in Q3 of FY17, including: making CEED software available on GitHub, developing the project website, and the preparation of CEED’s first annual meeting.
Key components of CEED software development involve fast finite element operator storage and evaluation, architecture optimizations, performant algorithms for all orders, global kernels for finite element operators, efficient use of the memory sub-system, optimal data locality and motion, enhanced scalability and parallelism, and fast tensor contractions. As ultimate goals of the project, CEED is exploring and identifying the best algorithms for the full range of discretizations and applying algorithmic and software development to support ECP applications’ needs. In this milestone we report on the initial integration of CEED software in the selected first-wave ECP/CEED apps and the continued exploration of other ECP applications as second-wave (milestone CEED-MS23) and third-wave (milestone CEED-MS35) ECP/CEED application candidates. An extensive evaluation of various approaches for GPU acceleration of the CEED computational motives is also a major focus of the report, both in the settings of CEED’s Nekbone and Laghos miniapps, as well as versions of CEED’s bake-off problems (introduced in milestone CEED-MS6). The first-wave ECP applications targeted for coupling with CEED software include the ExaSMR and MARBL applications. We also report on near-term collaboration with the seed-funded Urban Systems project, as well as engagements with ACME, ExaAM, GEOS and the Application Assessment and Proxy App projects. The ExaSMR project involves coupled thermal-hydraulics/neutronics, with the latter based on Monte Carlo methods and the former based on high-order discretizations of the Navier-Stokes and energy equations for accurate simulation of turbulent transport. The project requires fast and efficient turbulence simulation capabilities that will scale to exascale platforms. Work within CEED will ensure that all aspects of the Nek5000 workflow scale to the target problem space, which involves > 10 10 degrees of freedom in typical production runs. CEED’s goal is to provide implementations that perform with maximum attainable efficiency and deliver low turn-around times. A deliverable for this milestone is beta-release of the GPU-based variant of Nek5000. MARBL is targeting high-energy-density physics problems, including single fluid multi-material hydrodynamics and radiation/magnetic diffusion simulation, with applications in inertial confined fusion, pulsed power experiments, and equation of state/material strength analysis. The code uses high-order methods based arbitrary Lagrangian-Eulerian, direct Eulerian, and unstructured adaptive mesh refinement. A deliverable for this milestone is collaboration with MARBL for improved performance based on partially-assembled operators. The Urban exascale project is planning to couple real-time data with high performance simulations to study particulate transport in cities. Nek5000 will be used for large eddy and RANS (Reynolds-averaged Navier-Stokes) simulations of turbulent transport in these domains. Areas where the CEED team is aiding the Urban Canyon group include creating high-order meshes for urban geometries and developing boundary conditions appropriate for simulations close to real-life urban conditions. The software artifacts delivered as part of this milestone include GPU-enabled versions of the Nekbone and Laghos miniapps, which are provided through the CEED website, http://ceed.exascaleproject.org and the CEED GitHub organization, http://github.com/ceed. In addition to details and results from the above R&D efforts, in this document we are also reporting on other project-wide activities performed in Q4 of FY17, including: the CEED first annual meeting and participation of CEED researchers in a variety of outreach activities.
The goal of this milestone was to improve the high-order software ecosystem for CEED-enabled ECP applications by making progress on efficient matrix-free kernels targeting forthcoming ECP architectures. These kernels included matrix-free preconditioning and the development of new set of CEED solver bake-off problems. As part of this milestone, we also released the next version of the CEED software stack, CEED-4.0, reported on results from several application collaborations, and documented the efforts of porting to AMD GPUs for Frontier and other modern architectures, such as Fugaku. The specific tasks addressed in this milestone were: (1) Port and run CEED benchmarks/miniapps on Frontier EA systems; (2) Demonstrate performant libCEED integration in MFEM, Nek and applications; (3) Matrix-free preconditioning of high-order operators; (4) Benchmark problems for fast high-order solvers on GPU platforms; and (5) Public release of CEED-4.0. The artifacts delivered include the next version of the CEED software stack, CEED-4.0, the next libCEED release, libCEED-0.8, and a number of developments integrated within applications to improve their GPU and CPU performance and capabilities. See the CEED website, https://ceed.exascaleproject.org and the CEED GitHub organization, https://github.com/ceed for more details.
The goal of this milestone was to help CEED-enabled ECP applications (particularly ExaSMR, MARBL, ExaAM, ExaWind and E3SM) in their preparations for the Aurora and Frontier architectures. This work included collaboration with ECP vendors and porting and optimization of CEED’s benchmarks and miniapps to early access hardware. As part of this milestone, we also made the best bake-off problems and bake-off kernel implementation from Nek, MFEM, libParanumal and the external community available in the latest libCEED release, libCEED-0.7. During the milestone period we also organized, in virtual form, the fourth CEED Annual meeting (CEED4AM) which included representatives from ECP applications, vendors and software technology projects. The specific tasks addressed in this milestone were to: (1) Work with vendors to port and run CEED benchmarks on early access systems for Aurora and Frontier; (2) Make the best BP/BK implementations from Nek, MFEM, libParanumal and external community available in libCEED; (3) Organize the next CEED Annual meeting (CEED4AM); and (4) Optimize CEED applications and miniapps for Aurora and Frontier architectures. The artifacts delivered include the next libCEED release, libCEED-0.7, and a number of developments integrated within applications to improve their GPU performance and capabilities. See the CEED website, http://ceed.exascaleproject.org and the CEED GitHub organization, http://github.com/ceed for more details.
Key components of CEED software development involve fast finite element operator storage and evaluation, architecture optimizations, performant algorithms for all orders, global kernels for finite element operators, efficient use of the memory sub-system, optimal data locality and motion, enhanced scalability and parallelism, and fast tensor contractions. As ultimate goals of the project, CEED is exploring and identifying the best algorithms for the full range of discretizations and applying algorithmic and software development to support ECP applications’ needs. In this milestone, we initiated the development and implementation of a common CEED API consisting of two main components: low-level and high-level APIs. We accomplished the goal of having the low-level component ready for the release of CEED v1.0 in the next quarter, see CEED-MS13. In this report we also provide a highlight from CEED’s integration with the MARBL app and the corresponding Laghos miniapp. A main theme in this work has been the systematic transition of advanced algorithms, developed and tested in Laghos, to the large-scale multi-physics settings of the MARBL code. The low-level CEED API provides a set of FE kernels and components for writing new low-level kernels. Examples include: vector and sparse linear algebra, element matrix assembly over a batch of elements, partial assembly and action for efficient high-order operators like mass, diffusion, advection, etc. The main goal of the low-level API is to establish the basis for the high-level API. Also, identifying such low-level kernels and providing a reference implementation for them serves as the basis for collaboration with vendors and STs. Another goal for the low-level API is to make it easy for applications with their own discretization infrastructure, who do not want to switch directly to using the high-level CEED API, to still evaluate and use the core operations provided by the low-level API. One of the challenges with high-order methods is that a global sparse matrix is no longer a good representation of a high-order linear operator, both with respect to the FLOPs needed for its evaluation, as well as the memory transfer needed for a matvec. Thus, another important question we tried to address while developing the low-level API is: is it possible to abstract out in a natural and efficient way the different implementations and data structures that arise when dealing with various computational device types: CPUs, GPUs, etc. Fully answering this question is beyond the scope of this particular milestone, since that requires longer time as we develop and expand the devices we support. The future high-level API will be the frontend provided by CEED consisting of high-level abstractions such as meshes, finite element spaces and solutions, bilinear forms, solvers, etc. At this high-level, an important aspect of the API will be to provide a uniform abstraction layer for writing code in a portable manner. To achieve that, we plan to utilize the MPI programming model combined with a device abstraction layer (DAL) for finite element computations that we will develop. The DAL will serve as the bridge between the low- and the high-level APIs, allowing a variety of programming models to be used for the low-level kernel implementations. The software artifacts delivered as part of this milestone include an initial CEED API software implementation (libCEED) provided through the CEED website, http://ceed.exascaleproject.org and the CEED GitHub organization, http://github.com/ceed. In addition to details and results from the above R&D efforts, in this document we are also reporting on other project-wide activities performed in Q1 of FY18, including: the Nek5000 v17.0 MFEM v3.3.2 and PETSc v3.8 releases, collaborations with ECP/ST and SciDAC projects, the inaugural Nek5000 hackathon and various outreach activities.
The ideal design and operation of small hydropower plants is a complex optimization problem with economic, social, and environmental objectives. The waterSHED (Water Allocation Tool Enabling Rapid Small Hydropower Environmental Design) model is a user-friendly tool that allows hydropower stakeholders to model the trade-offs among these objectives using the Standard Modular Hydropower (SMH) framework. The SMH framework employs modular technologies that can be represented as blackbox objects and combined within a river to create a hydropower facility. For a given site, the waterSHED model aims to determine which modules should be placed in a facility and how those modules should be operated. This user guide describes how to use the graphical user interface and related functionalities. This document also summarizes the background research and mathematical formulations that are explained indepth in the accompanying doctoral dissertation. This model is an early step toward a new hydropower design process that employs standardization and modularity to reduce costs, development timelines, and challenges regarding social and environmental mitigation measures for low-head, small hydropower development. The waterSHED model is a Python application that will require the ability to download a GitHub repository, import the necessary packages, and run a set of Python script files using an integrated development environment. The script produces a graphical user interface to coordinate inputs, simulate operation, and visualize results, so no coding experience is needed once the script is running. Additionally, the waterSHED Workbook is a Microsoft Excel file that works with the Python script to facilitate data entry
The general objective of our project has been to investigate the ability of Independent Distribution System Operators (IDSOs), functioning as linkage agents for Integrated Transmission and Distribution (ITD) systems, to facilitate the flexible availability and usage of reserve in support of ITD system operations. This general objective is in accordance with Order 2222 of the U.S. Federal Energy Regulatory Commission (FERC), titled “Participation of Distributed Energy Resource Aggregations in Markets Operated by Regional Transmission Organizations and Independent System Operators”. The Final Rule for FERC Order 2222 was issued on September 17, 2020. The primary contribution of our project is that we have formulated an innovative energy management Transactive Energy Design (TES) approach for ITD systems that provides promising support for our project objective. Specifically, we have developed a new type of IDSO-managed TES design for distribution system operations, as well as new types of swing contracts permitting IDSOs to participate in transmission system operations as providers of reserve harnessed from distribution system resources in return for appropriate compensation. Together, these design elements constitute a scalable market-based approach facilitating efficient reserve procurement for ITD system operations from a fuller range of power resources. The efficacy of our approach has been demonstrated by means of detailed conceptual analyses as well as test case simulations. To implement the latter, we have developed the ITD TES Platform V2.0, a computational platform that permits the modeling and software implementation of ITD system operations over time. The Electric Reliability Council of Texas (ERCOT) energy region has been used as the empirical anchor for the development of this platform. Our conceptual and test-case work has been reported in a Wiley/IEEE Press book, two refereed book chapters, and seven refereed journal articles. The key components comprising the ITD TES Platform V2.0 have been released as documented open-source software at online GitHub repositories.
Pumped Storage Hydropower (PSH) is one of the most popular energy storage technologies in the world. It uses an upper reservoir to store water which can be later used during high-demand. In the United States, most of the energy storage capability actually corresponds to PSH. Moreover, PSH also brings multiple benefits to grid operation. This report presents the Simulink models of three common PSH technologies: Fixed-Speed (FS), Variable-Speed (VS), and Ternary (T)-PSH. These models are available to the general public on this GitHub repository, which contains the MATLAB model initialization files, the Simulink model files, and supplementary MATLAB code used to obtain the figures in this work. For each PSH model, an introductory description of the model components and other relevant functionalities are provided. For further information regarding the models and the initialization parameters, the reader is referred to the shared files in the repository. This report also presents the dynamic behavior of each model. The response of such models to a load event is analyzed and matched with each model's features. A custom IEEE 39 bus case is employed for the FS and T-PSH simulations, while the VS-PSH is simulated on a simplified three-bus test system due to the computational complexity of the model. For the T-PSH, the steady-state and the switching between several operating modes are also studied in this work.
This presentation discusses the new PTRAC capabilities and workflows. The PTRAC capability in MCNP6.3 has seen a massive overhaul since MCNP6.2. The new HDF5 file format allows for both MPI- and thread-based parallelism. MCNPTools has been updated to handle the new HDF5 PTRAC format and is now open sourced on GitHub. Built-in capabilities, such as the pulse-height tally coincident capture special treatment, can largely be replicated through separate postprocessing scripts that leverage both PTRAC and MCNPTools. This allows for greater flexibility in user-specified and controlled detector response functionality, ultimately using the MCNP code for what it is best at (i.e., particle transport).
We have implemented several corrections to the electronic stopping power model combining the RPA dielectric response formalism and local density approximation with electronic density distribution calculated in an average atom model. These modifications include strong collision correction, local field correction, electron binding energy correction, and the Barkas effect. The combined results bring the RPA-LDA stopping power in cold targets to closer agreements with experiments for a wide range of materials. The same method is then applied to the stopping of ions in warm dense plasmas. The computational framework developed during this project is publicly available on GitHub (https://github.com/dedx-erpa/dedx). Tabulated data for protons in cold target for common materials are located in the data/ subdirectory of the repository.
The U.S. Department of Energy (DOE) Office of Nuclear Energy’s Advanced Modeling and Simulation (NEAMS) Program develops models of advanced reactor phenomena to demonstrate code applicability to challenging physics problems, drive code development through user assessment, and perform code verification and validation. Meanwhile, the U.S. DOE’s National Reactor Innovation Center (NRIC) hosts an open-source website and associated GitHub repository called the Virtual Test Bed (VTB) on which computational models for advanced reactors are documented and shared with the reactor community. Several NEAMS advanced reactor models (including input files, documentation, and discussion of results) have recently been contributed to the NRIC VTB. The open sharing of these models benefits the reactor community by providing “best practice” examples using NEAMS tools for advanced reactor physics problems. This report summarizes and provides links to these new models, which include modeling phenomena important to liquid metal cooled fast reactors, molten salt reactors, high temperature gas-cooled reactors, and microreactors.
We successfully verified in the following three aspects the feasibility of using a cryogenic scintillating crystal-based neutrino detector at the Spallation Neutron Source (SNS), Oak Ridge National Laboratory, for the detection of low-mass dark matter particles and non-standard neutrino interactions (NSIs), as part of the detector R&D effort of the COHERENT experiment. First, we demonstrated the possibility of using silicon photomultipliers (SiPMs) at cryogenic temperatures to replace traditional photomultiplier tubes (PMTs) as light sensors. Second, we verified that the high light yield of undoped CsI crystals measured above 13 keVee at 77 K still holds down to 5.9 keVee. Third, we successfully measured nuclear quenching factor of undoped cryogenic CsI at the Triangle Universities Nuclear Laboratory with the help from our Duke collaborators. The first achievement resulted in a publication in European Physics Journal C. The second resulted in an arXiv pre-print, which is under journal review. The last one indicates that the performance of the proposed detector may be better than what was assumed in the literature. The analysis is in the final stage and will result in another journal publication. In addition, two graduate students involved in this project graduated with master’s degrees during the project period. Both decided to continue their research as PhD students. One open-source data analysis code package was created and is publicly available on GitHub. A set of tutorials about Monte Carlo simulation of radiation interacting with detectors were created on YouTube, receiving more than 100,000 views.
The electric power grid is a complex critical infrastructure that forms the lifeline of modern society, and its secure and reliable operation is of paramount importance to national security and economic wellbeing. However, recent findings documented in authoritative sources indicate the threat of cyber-based attacks growing in numbers and sophistication. However, securing the grid against stealthy cyberattacks is a challenging task due to legacy nature of the infrastructure coupled with dynamic nature of threat landscape and ever-growing sophistication of the adversaries. Additionally, the grid’s attack surface continues to grow with the increased dependence on digital communications and control that now extends to each consumer through smart meters and distributed energy resources. Unfortunately, this expansive surface increases the grid’s vulnerability and further exposes critical control systems in both substations and control centers. To respond to this emerging need, we had successfully assembled an interdisciplinary team with academic- industry partnership to successfully conduct research, development, evaluation, demonstration, and commercialization of attack surface reduction tools, whose goal was to significantly reduce the cyber attack surface in the North American power grid. Our proposed project was a synergistic collaborative effort leveraging the synergistic expertise of the team members across power systems, cyber security and CPS security, testbeds, field deployments and demonstration, and successful commercialization. The following are the specific tasks that have been successfully completed two phases (2016-2020). Phase I: Task 1: Developed and implemented a robust Project Management and Data Management Plan, coupled with a well thought out Risk Mitigation Plan. Task 2.1: Developed a comprehensive framework that continually assesses and autonomously reduces the attack surface for the power grid control environment spanning across substations, control center and the SCADA network to significantly reduce the risks of cyber attacks. Task 2.2: Developed attack surface analysis techniques, metrics, and tools that assess the attack surface at multiple levels including the control center, substations, and the SCADA network. Task 2.3: Developed attack surface reduction techniques and tools that dynamically reduce attack surface and hence increase attacker’s cost without interfering in the critical functions of the system. Task 2.4: Prototyped, implemented, and quantitatively evaluated/validated the techniques and tools on a realistic industrial CPS security testbed environment by leveraging the unique resources of the team. Task 3: Developed Commercialization plan to transition the developed tools into power system industry stakeholders for a broader adoption by leveraging the expertise of our industrial members. Phase II: Task 4: Successfully completed field demonstration, verification, and evaluation of the effectiveness of the attack surface analysis and reduction techniques on a realistic utility testbed environment. This also involved the development of realistic scenarios, sound metrics, data sets, evaluation criteria, and documentation. Technology integration & Field demonstration: The project had significantly advanced the state-of-the-art research and practice in improving the cybersecurity of our nation’s power grid infrastructure against cyber threats. In particular, the proposed, designed, and deployed attack surface analysis and reduction algorithms and tools have contributed to significantly reducing the exposure and risk of the devices, substations, and the integrated SCADA/EMS/ DMS grid environment to cyber threat. Strong demonstration and evaluation techniques have verified the feasibility of the developed techniques on realistic cyber-physical testbeds and utility partner's real grid environment, and collaborative research and evaluation of attack surface reduction techniques (for wide-are monitoring and control) within a vendor (GE) EMS platform. The Attack Host Analyzer (AHA) tool that was developed through this project was made available through GitHub.
otsdaq is a data acquisition software. The purpose of this project was to improve the design and the functionality of some features on the Graphical User Interface of otsdaq. The GUI interface is developed in HTML and JavaScript. The code is maintained on GitHub and developed by different users working on a remote machine environment.
In this 25 minute presentation, we showcase our open source “GeoThermalCloud” tool for identifying hidden geothermal resources using a publicly available dataset for southwestern New Mexico. The presenters include Bulbul Ahmmed and Luke Frash. All of the visuals use source material from LA-UR approved publications and this work falls under the Earth Sciences DUSA. The code shown in this video is already released with LANL approval in open source format on GitHub and DockerHub. The audio in this video includes only material on the topics of geothermal energy and machine learning applied to geothermal energy. The primary machine learning method used is LANL’s Non-negative Matrix Factorization “NMFk” method. Modeling work also mentions LANL’s Geothermal Design Tool “GeoDT” which is another approved open source code that has been released by LANL. This work was performed for DOE Geothermal Technologies Office (DE-EE-3.1.8.1). The host for the released video is intended to be YouTube or a suitable perpetual data repository such as GDR.
The U.S. Department of Energy (DOE) Office of Nuclear Energy’s Advanced Modeling and Simulation (NEAMS) Program develops models of advanced reactor phenomena to demonstrate code applicability to challenging physics problems, drive code development through user assessment, and perform code verification and validation. Meanwhile, the U.S. DOE’s National Reactor Innovation Center (NRIC) hosts an open-source website and associated GitHub repository called the Virtual Test Bed (VTB) on which computational models for advanced reactors are documented and shared with the reactor community. This work documents NEAMS efforts to support industry adoption of advanced modeling tools through contribution of 10 NEAMS models to the NRIC Virtual Test Bed including models for the High Temperature Test Facility (HTTF), TRISO fuel failure in a microreactor, and multiphysics models of a molten chloride fast reactor, among others. The open sharing of these models benefits the reactor community by providing “best practice” examples using NEAMS tools for advanced reactor physics problems. In particular, the HTTF model is being used for code validation and benchmarking activities. The microreactor and molten chloride fast reactor models are representative of analysis that may be useful for current candidates of DOME and LOTUS, NRIC’s physical testbeds. This report summarizes and provides links to these new models, among others.
This project sets up a website to support the nascent Muon Catalyzed Fusion collaboration including development of particle accelerators and transport beamlines for muon beams. The website is envisioned as having the general public information pages and private pages for collaboration members. Multimedia elements like images, text animations, and video lectures, covering a broad spectrum of topics will populate the educational site, covering muon facilities, to comprehensive explorations and seminal documents that define the science of Muon Catalyzed Fusion, Acceleration, Applications, Instrumentation, Beamline Design, and beam dynamics design codes. Ensuring compatibility across devices and operating systems, it also features integration with Google Docs for collaboration, a code repository (GitHub), a blog platform with comments (WordPress), the potential for ChatGPT integration and interactive graph plotting with Python Plotty to enhance data visualization. This project will maintain public and protected private pages, due to the proprietary nature of the work or research in progress. The public sections will be built to foster dissemination of information and highlight recent work within the NK Labs collaboration, including lectures, published papers, and regular blog posts with open commenting. The private section will support unpublished or nonpublic research, by facilitating collaborative efforts through integrated Google Docs and Python Plotty for shared graphing work. Ultimately, this project strives to make complex scientific knowledge more accessible to the public, foster enhanced collaboration, and serve as a platform for sharing cutting-edge research in Muon Catalyzed Fusion and Accelerators.