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At least 307 records · Page 17

Experimental and Monte Carlo studies of fluence corrections for graphite calorimetry in low- and high-energy clinical proton beams

Purpose: The aim of this study was to determine fluence corrections necessary to convert absorbed dose to graphite, measured by graphite calorimetry, to absorbed dose to water. Fluence corrections were obtained from experiments and Monte Carlo simulations in low- and high-energy proton beams. Methods: Fluence corrections were calculated to account for the difference in fluence between water and graphite at equivalent depths. Measurements were performed with narrow proton beams. Plane-parallel-plate ionization chambers with a large collecting area compared to the beam diameter were used to intercept the whole beam. High- and low-energy proton beams were provided by a scanning and double scattering delivery system, respectively. A mathematical formalism was established to relate fluence corrections derived from Monte Carlo simulations, using the FLUKA code [A. Ferrari et al., “FLUKA: A multi-particle transport code,” in CERN 2005-10, INFN/TC 05/11, SLAC-R-773 (2005) and T. T. Böhlen et al., “The FLUKA Code: Developments and challenges for high energy and medical applications,” Nucl. Data Sheets 120, 211–214 (2014)], to partial fluence corrections measured experimentally. Results: A good agreement was found between the partial fluence corrections derived by Monte Carlo simulations and those determined experimentally. For a high-energy beam of 180 MeV, the fluence corrections from Monte Carlo simulations were found to increase from 0.99 to 1.04 with depth. In the case of a low-energy beam of 60 MeV, the magnitude of fluence corrections was approximately 0.99 at all depths when calculated in the sensitive area of the chamber used in the experiments. Fluence correction calculations were also performed for a larger area and found to increase from 0.99 at the surface to 1.01 at greater depths. Conclusions: Fluence corrections obtained experimentally are partial fluence corrections because they account for differences in the primary and part of the secondary particle fluence. A correction factor, F(d), has been established to relate fluence corrections defined theoretically to partial fluence corrections derived experimentally. The findings presented here are also relevant to water and tissue-equivalent-plastic materials given their carbon content.

60 APPLIED LIFE SCIENCES↗

MO-FG-CAMPUS-IeP1-04: Kerma Area Product Calculation for Non-Uniform X-Ray Fields Using a Skin Dose Tracking System

Purpose: The functionality of the Dose-Tracking System (DTS) has been expanded to include the calculation of the Kerma-Area Product (KAP) for non-uniform x-ray fields such as result from the use of compensation filters during fluoroscopic procedures Methods: The DTS calculates skin dose during fluoroscopic interventions and provides a color-coded dose map on a patient-graphic model. The KAP is the integral of air kerma over the x-ray field and is usually measured with a transmission-ionization chamber that intercepts the entire x-ray beam. The DTS has been modified to determine KAP when there are beam non-uniformities that can be modeled. For example, the DTS includes models of the three compensation filters with tapered edges located in the collimator assembly of the Toshiba Infinix fluoroscopic C-Arm and can track their movement. To determine the air kerma after the filters, DTS includes transmission factors for the compensation filters as a function of kVp and beam filtration. A virtual KAP dosimeter is simulated in the DTS by an array of graphic vertices; the air kerma at each vertex is corrected by the field non-uniformity, which in this case is the attenuation factor for those rays which pass through the filter. The products of individual vertex air-kerma values for all vertices within the beam times the effective-area-per-vertex are summed for each x-ray pulse to yield the KAP per pulse and the cumulative KAP for the procedure is then calculated. Results: The KAP values estimated by DTS with the compensation filter inserted into the x-ray field agree within ± 6% with the values displayed on the fluoroscopy unit monitor, which are measured with a transmission chamber. Conclusion: The DTS can account for field non-uniformities such as result from the use of compensation filters in calculating KAP and can obviate the need for a KAP transmission ionization chamber. Partial support from NIH Grant R01-EB002873 and Toshiba Medical Systems Corp.

60 APPLIED LIFE SCIENCES↗

Structural Studies of Chikungunya Virus-Like Particles Complexed with Human Antibodies: Neutralization and Cell-to-Cell Transmission

Chikungunya virus is a positive-stranded RNA alphavirus. Structures of chikungunya virus-like particles in complex with strongly neutralizing antibody Fab fragments (8B10 and 5F10) were determined using cryo-electron microscopy and X-ray crystallography. By fitting the crystallographically determined structures of these Fab fragments into the cryo-electron density maps, we show that Fab fragments of antibody 8B10 extend radially from the viral surface and block receptor binding on the E2 glycoprotein. In contrast, Fab fragments of antibody 5F10 bind the tip of the E2 B domain and lie tangentially on the viral surface. Fab 5F10 fixes the B domain rigidly to the surface of the virus, blocking exposure of the fusion loop on glycoprotein E1 and therefore preventing the virus from becoming fusogenic. Although Fab 5F10 can neutralize the wild-type virus, it can also bind to a mutant virus without inhibiting fusion or attachment. Although the mutant virus is no longer able to propagate by extracellular budding, it can, however, enter the next cell by traveling through junctional complexes without being intercepted by a neutralizing antibody to the wild-type virus, thus clarifying how cell-to-cell transmission can occur. Alphaviral infections are transmitted mainly by mosquitoes. Chikungunya virus (CHIKV), which belongs to the Alphavirus genus, has a wide distribution in the Old World that has expanded in recent years into the Americas. There are currently no vaccines or drugs against alphaviral infections. Furthermore, a better understanding of CHIKV and its associated neutralizing antibodies will aid in the development of effective treatments.

59 BASIC BIOLOGICAL SCIENCES↗

Lu-Hf and Sm-Nd geochronological constraints on the influence of subduction metamorphism in controlling the Hf-Nd terrestrial array: Evidence from the world’s orogenic belts

To create a better understanding of the influence of subduction metamorphism on the Hf-Nd terrestrial array, this study examines all of the available Lu-Hf and Sm-Nd garnet isochron ages from the world’s orogenic eclogites and amphi bolites. The garnet isochron y-intercept values provide a record of each sample’s epsilon Hf ( ε Hf) and Nd ( ε Nd) at the age recorded by the isochron, which in the case of most orogenic eclogites and amphibolites is the time of prograde metamorphism during subduction. It is further possible to assess the extent to which each sample’s Lu-Hf and Sm-Nd isotope systematics have remained undisturbed since the date recorded by the isochron by comparison of the bulk-rock isotope systematics with the isochron initial value. This approach provides a means of understanding the Lu-Hf and Sm-Nd systematics of post-subduction metamorphic oceanic crust. On a global scale, the coupled Lu-Hf and Sm-Nd isotope systematics of this crust closely align with the Hf-Nd terrestrial array and have average 176 Lu/ 177 Hf and 147 Sm/ 144 Nd ratios within error of the chondritic uniform reservoir values. This is an important finding because it suggests that a reservoir of deeply subducted oceanic crust, possibly residing at the core-mantle boundary, is unlikely to be significantly fractionated from the Hf-Nd terrestrial array. In contrast to the samples of subduction-metamorphosed oceanic crust, metamorphic rocks with a continental crustal protolith demonstrate garnet isochron initial values and bulk-rock Lu-Hf and Sm-Nd isotope systematics indicating significant decoupling from the Hf-Nd terrestrial array. However, because this material is not readily subducted, this strongly decoupled signature is unlikely to be transferred into deep Earth. Mixing calculations aimed at developing a clearer understanding of what factors control decoupling of a sample’s Lu-Hf and Sm-Nd systematics from the Hf-Nd terrestrial array highlight the complexity of mass-transfer regimes operating in the subduction environment.

54 ENVIRONMENTAL SCIENCES↗

Study of soft X-ray emission during wire array implosion under plasma focus conditions at the PF-3 facility

Results of measurements of soft X-ray emission with photon energies of <1 keV under conditions of a plasma focus (PF) experiment are presented. The experiments were carried out at the world’s largest PF device—the PF-3 Filippov-type facility (I ⩽ 3 MA, T/4 ≈ 15–20 µs, W{sub 0} ⩽ 3 MJ). X-ray emission from both a discharge in pure neon and with a tungsten wire array placed on the axis of the discharge chamber was detected. The wire array imploded under the action of the electric current intercepted from the plasma current sheath of the PF discharge in neon. The measured soft X-ray powers from a conventional PF discharge in gas and a PF discharge in the presence of a wire array were compared for the first time.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Suppression of Penning discharges between the KATRIN spectrometers

Abstract The KArlsruhe TRItium Neutrino experiment (KATRIN) aims to determine the effective electron (anti)-neutrino mass with a sensitivity of 0.2eV/c $$^2$$ 2 by precisely measuring the endpoint region of the tritium $$\beta $$ β -decay spectrum. It uses a tandem of electrostatic spectrometers working as magnetic adiabatic collimation combined with an electrostatic (MAC-E) filters. In the space between the pre-spectrometer and the main spectrometer, creating a Penning trap is unavoidable when the superconducting magnet between the two spectrometers, biased at their respective nominal potentials, is energized. The electrons accumulated in this trap can lead to discharges, which create additional background electrons and endanger the spectrometer and detector section downstream. To counteract this problem, “electron catchers” were installed in the beamline inside the magnet bore between the two spectrometers. These catchers can be moved across the magnetic-flux tube and intercept on a sub-ms time scale the stored electrons along their magnetron motion paths. In this paper, we report on the design and the successful commissioning of the electron catchers and present results on their efficiency in reducing the experimental background.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Characterization of water-based liquid scintillator for Cherenkov and scintillation separation

Abstract This paper presents measurements of the scintillation light yield and time profile for a number of concentrations of water-based liquid scintillator, formulated from linear alkylbenzene (LAB) and 2,5-diphenyloxazole (PPO). We find that the scintillation light yield is linear with the concentration of liquid scintillator in water between 1 and 10% with a slope of $$127.9\pm 17.0$$ 127.9 ± 17.0 ph/MeV/concentration and an intercept value of $$108.3\pm 51.0$$ 108.3 ± 51.0 ph/MeV, the latter being illustrative of non-linearities with concentration at values less than 1%. This is larger than expected from a simple extrapolation of the pure liquid scintillator light yield. The measured time profiles are consistently faster than that of pure liquid scintillator, with rise times less than 250 ps and prompt decay constants in the range of 2.1–2.85 ns. Additionally, the separation between Cherenkov and scintillation light is quantified using cosmic muons in the CHESS experiment for each formulation, demonstrating an improvement in separation at the centimeter scale. Finally, we briefly discuss the prospects for large-scale detectors.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Structure functions from renormalization group improved small x evolution

Abstract We perform the fit to the structure function $$F_2$$ F 2 data from HERA including terms due to the resummation at small x . The equation for the unintegrated gluon density is solved, previously established within the renormalization group improved small x framework. We find very good description of the structure function $$F_2$$ F 2 and its charm component $$F_2^c$$ F 2 c . The resulting unintegrated gluon density is found to be consistent with the calculations based on similar approaches available in the literature, with only slightly higher intercept value.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Two-pion femtoscopic correlations in Be+Be collisions at $\sqrt{s_{\text {NN}}} = 16.84$ GeV measured by the NA61/SHINE at CERN

This paper reports measurements of two-pion femtoscopic correlations in Be+Be collisions at a beam momentum of 150$A\,\hbox {GeV}\!/\!c$ (energy available in the center-of-mass system for nucleon pair $\sqrt{s_{\text {NN}}} = 16.84$ GeV) by the NA61/SHINE experiment at the CERN SPS accelerator. The obtained momentum space correlation functions can be well described by a Lévy distributed source model. The transverse mass dependence of the Lévy source parameters is presented, and their possible theoretical interpretations are discussed. The results show that the Lévy exponent $\alpha $ is approximately constant as a function of $m_{\text {T}}$ , and far from both the Gaussian case of $\alpha = 2$ or the conjectured value at the critical endpoint, $\alpha = 0.5$. The radius scale parameter R shows a slight decrease in $m_{\text {T}}$ , which can be explained as a signature of transverse flow. Finally, an approximately constant trend of the intercept parameter $\lambda $ as a function of $m_{\text {T}}$ was observed, similar to previous NA44 S + Pb results (obtained with a Gaussian approximation, but unlike RHIC results).

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Search for baryon junctions in e+A collisions at the electron ion collider

Constituent quarks in a nucleon are the essential elements in the standard “quark model” associated with the electric charge, spin, mass, and baryon number of a nucleon. Quantum chromodynamics (QCD) describes nucleon as a composite object containing current quarks (valence quarks and sea (anti-)quarks) and gluons. These subatomic elements and their interactions are known to contribute in complex ways to the overall nucleon spin and mass. In the early development of QCD theory in the 1970s, an alternative hypothesis postulated that the baryon number might manifest itself through a non-perturbative configuration of gluon fields forming a Y-shaped topology known as the gluon junction. In this work, we propose to test such hypothesis by measuring (i) the Regge intercept of the net-baryon distributions for e+(p)Au collisions, (ii) baryon and charge transport in the isobaric ratio between e+Ru and e+Zr collisions, and (iii) target flavor dependence of proton and antiproton yields at large rapidity, transported from the hydrogen and deuterium targets in e+p(d) collisions. Our study indicates that these measurements at the EIC can help determine what carries the baryon number.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

BonVoision: Leveraging Spatial Data Smoothness For Recovery From Memory Soft Errors

The increasing soft error rates in memory systems raise an emerging concern for modern computing systems. As a result, detectable but uncorrectable errors (DUEs) become potentially more frequent and affect HPC applications. Today, upon encountering a DUE, HPC applications crash, incurring significant performance, storage, and energy overheads. In this paper, we propose a technique to continue application execution past a DUE through the repair of the corrupted memory data by leveraging spatial data smoothness. We present BonVoision, a run-time system that intercepts DUE events, analyzes the binary to identify data elements in the structural neighborhood of the event, and fixes the corrupted data elements by interpolating from the values in their neighborhood. Our evaluation demonstrates that BonVoision incurs negligible overhead and outperforms other recovery strategies by a factor of 2×, on average. We demonstrate that BonVoision also improves the efficiency of existing checkpointing/restart schemes by approximately increasing the optimal checkpoint interval by 23%.

Fang, Bo↗

Optimization of the angular orientation for a fast ion loss detector in a tokamak

A scintillator type fast ion loss detector measures the gyroradius and pitch angle distribution of superthermal ions escaping from a magnetically confined fusion plasma at a single location. Described here is a technique for optimizing the angular orientation of such a detector in an axisymmetric tokamak geometry in order to intercept losses over a useful and interesting ranges of pitch angle. The method consists of evaluating the detector acceptance as a function of the fast ion constants of motion, i.e. energy, canonical toroidal momentum, and magnetic moment. The detector acceptance can then be plotted in a plane of constant energy and compared with the relevant orbit class boundaries and fast ion source distributions. Knowledge of expected or interesting mechanisms of loss can further guide selection of the detector orientation. The example of a fast ion loss detector for the National Spherical Torus Experiment-Upgrade (NSTX-U) is considered.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

FPChecker

CUDA is the programming model used to program NVIDIA GPUs, which are widely used in DOE supercomputers. FPChecker allows programmers to detect and fix hidden exceptions in the floating-point computations that CUDA executes. When a floating-point exception occurs (e.g., division by zero), GPUs cannot catch these errors. FPChecker intercepts each floating-point operations (addition, subtraction, multiplication and division) and reports to users where exceptions occur (file and line of code).

Laguna Peralta, Ignacio↗

Precancer Atlas to Drive Precision Prevention Trials

Cancer development is a complex process driven by inherited and acquired molecular and cellular alterations. Prevention is the holy grail of cancer elimination, but making this a reality will take a fundamental rethinking and deep understanding of premalignant biology. Here, we propose a national concerted effort to create a Precancer Atlas (PCA), integrating multi-omics and immunity – basic tenets of the neoplastic process. The biology of neoplasia caused by germline mutations has led to paradigm-changing precision prevention efforts, including: tumor testing for mismatch repair (MMR) deficiency in Lynch syndrome establishing a new paradigm, combinatorial chemoprevention efficacy in familial adenomatous polyposis (FAP), signal of benefit from imaging-based early detection research in high-germline risk for pancreatic neoplasia, elucidating early ontogeny in BRCA1-mutation carriers leading to an international breast cancer prevention trial, and insights into the intricate germline-somatic-immunity interaction landscape. Emerging genetic and pharmacologic (metformin) disruption of mitochondrial (mt) respiration increased autophagy to prevent cancer in a Li-Fraumeni mouse model (biology reproduced in clinical pilot) and revealed profound influences of subtle changes in mt DNA background variation on obesity, aging, and cancer risk. The elaborate communication between the immune system and neoplasia includes an increasingly complex cellular microenvironment and dynamic interactions between host genetics, environmental factors, and microbes in shaping the immune response. Cancer vaccines are in early murine and clinical precancer studies, building on the recent successes of immunotherapy and HPV vaccine immune prevention. Molecular monitoring in Barrett's esophagus to avoid overdiagnosis/treatment highlights an important PCA theme. Next generation sequencing (NGS) discovered age-related clonal hematopoiesis of indeterminate potential (CHIP). Ultra-deep NGS reports over the past year have redefined the premalignant landscape remarkably identifying tiny clones in the blood of up to 95% of women in their 50s, suggesting that potentially premalignant clones are ubiquitous. Similar data from eyelid skin and peritoneal and uterine lavage fluid provide unprecedented opportunities to dissect the earliest phases of stem/progenitor clonal (and microenvironment) evolution/diversity with new single-cell and liquid biopsy technologies. Cancer mutational signatures reflect exogenous or endogenous processes imprinted over time in precursors. In conclusion, accelerating the prevention of cancer will require a large-scale, longitudinal effort, leveraging diverse disciplines (from genetics, biochemistry, and immunology to mathematics, computational biology, and engineering), initiatives, technologies, and models in developing an integrated multi-omics and immunity PCA – an immense national resource to interrogate, target, and intercept events that drive oncogenesis.

59 BASIC BIOLOGICAL SCIENCES↗

Polarimetric Radar Relations for Quantification of Snow Based on Disdrometer Data

Abstract Accurate measurements of snow amounts by radar are very difficult to achieve. The inherent uncertainty in radar snow estimates that are based on the radar reflectivity factor Z is caused by the variability of snow particle size distributions and snow particle density as well as the large diversity among snow growth habits. In this study, a novel method for snow quantification that is based on the joint use of radar reflectivity Z and specific differential phase KDP is introduced. An extensive dataset of 2D-video-disdrometer measurements of snow in central Oklahoma is used to derive polarimetric relations for liquid-equivalent snowfall rate S and ice water content IWC in the forms of bivariate power-law relations S = and along with similar relations for the intercept N0s and slope Λs of the exponential snow size distribution. The physical basis of these relations is explained. Their multipliers are sensitive to variations in the width of the canting angle distribution and to a lesser extent the particles’ aspect ratios and densities, whereas the exponents are practically invariant. This novel approach is tested against the S(Z) relation using snow disdrometer measurements in three geographical regions (Oklahoma, Colorado, and Canada). Significant improvement in snow estimates relative to the traditional Z-based methods is demonstrated.

54 ENVIRONMENTAL SCIENCES↗

Primary Modes of Global Drop Size Distributions

Understanding drop size distribution (DSD) variability has important implications for remote sensing and numerical modeling applications. Twelve disdrometer datasets across three latitude bands are analyzed in this study, spanning a broad range of precipitation regimes: light rain, orographic, deep convective, organized midlatitude, and tropical oceanic. Principal component analysis (PCA) is used to reveal comprehensive modes of global DSD spatial and temporal variability. Although the locations contain different distributions of individual DSD parameters, all locations are found to have the same modes of variability. Based on PCA, six groups of points with unique DSD characteristics emerge. The physical processes that underpin these groups are revealed through supporting radar observations. Group 1 (group 2) is characterized by high (low) liquid water content (LWC), broad (narrow) distribution widths, and large (small) median drop diameters D 0 . Radar analysis identifies group 1 (group 2) as convective (stratiform) rainfall. Group 3 is characterized by weak, shallow radar echoes and large concentrations of small drops, indicative of warm rain showers. Group 4 identifies heavy stratiform precipitation. The low latitudes exhibit distinct bimodal distributions of the normalized intercept parameter N w , LWC, and D 0 and are found to have a clustering of points (group 5) with high rain rates, large N w , and moderate D 0 , a signature of robust warm rain processes. A distinct group associated with ice-based convection (group 6) emerges in the midlatitudes. Although all locations exhibit the same covariance of parameters associated with these groups, it is likely that the physical processes responsible for shaping the DSDs vary as a function of location.

54 ENVIRONMENTAL SCIENCES↗

Assessing Raindrop Breakup Parameterizations Using Disdrometer Observations

In this work, an intercomparison of raindrop mean diameter frequency distribution (RDFD) is performed for numerical simulations of precipitating cloud systems using an array of models and microphysics schemes. This includes results from the Regional Atmospheric Modeling System (RAMS) double-moment microphysics, the Hebrew University Cloud Model bin microphysics (HUCM) interfaced to the RAMS parent model, and the Weather Research and Forecasting (WRF) Model with the Thompson, Morrison, double-moment 6-class (WDM6), and National Severe Storms Laboratory (NSSL) double-moment schemes. Simulations are examined with respect to the raindrop size distribution (DSD) volume-number mean diameter (D m ) and intercept parameter (N w ). When compared to a suite of disdrometer observations, the RDFD resulting from each microphysics scheme exhibits varying degrees of mean drop size constraints and peaks in the frequency distribution of D m . A more detailed investigation of the peaked RDFD from the RAMS simulations suggests that the parameterization of raindrop collisional breakup can impose strong limitations on the evolution of simulated drop growth. As such, a summary and comparison of the drop breakup parameterizations among the aforementioned microphysics schemes is presented. While some drop breakup parameterizations are adjusted toward the observations by modifying the threshold diameter for the onset of breakup, this study explores the use of a modified maximum breakup efficiency. This method permits the parameterization to retain its threshold breakup diameter, while limiting the strength of drop breakup and permitting a broader range of drop sizes. As a result, the simulated mean drop sizes are in better agreement with observations.

54 ENVIRONMENTAL SCIENCES↗

Exploring the Sensitivity of Photosynthesis and Stomatal Resistance Parameters in a Land Surface Model

Abstract Land surface models, like the Common Land Model component of the ParFlow integrated hydrologic model (PF-CLM), are used to estimate transpiration from vegetated surfaces. Transpiration rates quantify how much water moves from the subsurface through the plant and into the atmosphere. This rate is controlled by the stomatal resistance term in land surface models. The Ball–Berry stomatal resistance parameterization relies, in part, on the rate of photosynthesis, and together these equations require the specification of 20 input parameters. Here, the active subspace method is applied to 2100 year-long PF-CLM simulations, forced by atmospheric data from California, Colorado, and Oklahoma, to identify which input parameters are important and how they relate to three quantities of interest: transpiration, stomatal resistance from the sunlit portion of the canopy, and stomatal resistance from the shaded portion. The slope (mp) and intercept (bp) parameters associated with the Ball–Berry parameterization are consistently important for all locations, along with five parameters associated with ribulose bisphosphate carboxylase/oxygenase (RuBisCO)- and light-limited rates of photosynthesis [CO2 Michaelis–Menten constant at 25°C (kc25), maximum ratio of oxygenation to carboxylation (ocr), quantum efficiency at 25°C (qe25), maximum rate of carboxylation at 25°C (vcmx25), and multiplier in the denominator of the equation used to compute the light-limited rate of photosynthesis (wj1)]. The importance of these input parameters, quantified by the active variable weight, and the relationship between the input parameters and quantities of interest vary seasonally and diurnally. Input parameter values influence transpiration rates most during midday, summertime hours when fluxes are large. This research informs model users about which photosynthesis and stomatal resistance parameters should be more carefully selected. Quantifying sensitivities associated with the stomatal resistance term is necessary to better understand transpiration estimates from land surface models.

54 ENVIRONMENTAL SCIENCES↗