Review of the genus Stericta Lederer (Lepidoptera: Pyralidae: Epipaschiinae) from Korea
Not Available
Kim, Hanul↗
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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KRAS4a and KRAS4b show distinct lipid-dependent regulation of RAS-RAF membrane dynamics
KRAS4a and KRAS4b are important regulators of signaling, and their interactions with the plasma membrane are dynamic and influenced by lipid composition. KRAS 4a and 4b have nearly identical globular domains but differ in their membrane-associated hyper variable region (HVR). The functional distinctions between these isoforms remain unclear, particularly with regards to their dependence on specific lipids and the membrane environment. Previous work showed that the membrane orientation of KRAS4b affects its ability to bind to RAF kinase RBDCRD and that the KRAS–RBDCRD complex adopts different poses on the membrane as well as influences the size and composition of the lipid environment. To model differences between KRAS 4a and 4b protein–lipid interactions, we extended the Multiscale Machine-Learned Modeling Infrastructure (MuMMI) to incorporate continuum simulations in the grand canonical ensemble, enabling sampling across macroscopic, coarse-grained, and all-atom resolutions. Using this framework, we systematically altered PIP2 concentrations, KRAS 4a versus 4b, and RAF RBDCRD complexation to assess impacts on membrane–protein interactions and dynamics. Our results reveal that reducing PIP2 shifts and broadens the membrane orientational preference of both KRAS 4b and 4a, with stronger effects on 4b HVR localization versus 4a. We demonstrate that with depletion of the strong negatively charged PIP2 lipid, the less charged phosphatidylserine replaces PIP2. Our findings highlight similarities and distinctions in the dynamics and lipid dependency of KRAS isoforms and suggest that ordering of the local lipid composition by HVRs is a shared property and key modulator of RAS-mediated signaling at the plasma membrane.
Biological and medical sciences↗
Effects of NO2 aging on bismuth nanoparticles and bismuth-loaded silica xerogels for iodine capture
Not Available
Baskaran, Karthikeyan↗
Deformation behavior of a Co-Cr-Fe-Ni-Mo medium-entropy alloy at extremely low temperatures
In this work, we report the mechanical and microstructural characteristics of a medium-entropy alloy, Co 17.5 Cr 12.5 Fe 55 Ni 10 Mo 5 (atomic percent, at%) at cryogenic temperatures, down to a record low temperature of 0.5 K. The alloy exhibits excellent strength and ductility combined with a high strain-hardening rate in the entire temperature range investigated. Its property profile, including the yield strength, ultimate tensile strength, strain hardening capability, and absorbed mechanical energy, is better than those of most alloys and HEAs used in cryogenics. Within the interval of extremely low temperatures considered (0.5–4.2 K), the alloy exhibits several unusual features, including anomalies of the temperature dependence of the yield strength and tensile ductility, discontinuous plastic deformation (DPF), and a change in the propensity for the deformation-induced martensitic transformation. While the occurrence of these effects in the same temperature interval may be fortuitous, we hypothesize that they are interrelated and provide a tentative explanation of the observed phenomena on this basis.
36 MATERIALS SCIENCE↗
Deep-Learning-Derived Evaluation Metrics Enable Effective Benchmarking of Computational Tools for Phosphopeptide Identification
Tandem mass spectrometry (MS/MS)-based phosphoproteomics is a powerful technology for global phosphorylation analysis. However, applying four computational pipelines to a typical mass spectrometry (MS)-based phosphoproteomic dataset from a human cancer study, we observed a large discrepancy among the reported phosphopeptide identification and phosphosite localization results, underscoring a critical need for benchmarking. While efforts have been made to compare performance of computational pipelines using data from synthetic phosphopeptides, evaluations involving real application data have been largely limited to comparing the numbers of phosphopeptide identifications due to the lack of appropriate evaluation metrics. We investigated three deep learning-derived features as potential evaluation metrics: phosphosite probability, Delta RT and spectral similarity. Predicted phosphosite probability is computed by MusiteDeep, which provides high accuracy as previously reported; Delta RT is defined as the absolute retention time (RT) difference between RTs observed and predicted by AutoRT; and spectral similarity is defined as the Pearson’s correlation coefficient between spectra observed and predicted by pDeep2. Using a synthetic peptide dataset, we found that both Delta RT and spectral similarity provided excellent discrimination between correct and incorrect peptide-spectrum matches (PSMs) both when incorrect PSMs involved wrong peptide sequences and even when incorrect PSMs were caused by only incorrect phosphosite localization. Based on these results, we used all the three deep learning-derived features as evaluation metrics to compare different computational pipelines on diverse set of phosphoproteomic datasets and showed their utility in benchmarking performance of the pipelines. The benchmark metrics demonstrated in this study will enable users to select computational pipelines and parameters for routine analysis of phosphoproteomics data and will offer guidance for developers to improve computational methods.
59 BASIC BIOLOGICAL SCIENCES↗
Elucidating biodegradation of dimethyl terephthalate by two Rhodococcus strains for its valorization applications
Dimethyl terephthalate (DMT) serves as the precursor in the production of polyethylene terephthalate, polytrimethylene terephthalate, and polybutylene terephthalate. The widespread use of DMT in the polymer industry and its ubiquitous existence in end products raise alarms about its potential harm to humans and animals. DMT can enter the environment through the degradation of polymers and their end products, and cause endocrine disruption, oxidative stress, and an elevated risk of cancer. In recent years, DMT has also gained renewed interest in its potential for plastic recycling and upcycling. In this study, we identified two strains of Rhodococcus that possess DMT-degrading capabilities and utilized transcriptomic analysis and gene knockout to elucidate the mechanisms of DMT degradation. R. opacus PD630 and R. jostii RPET were found to convert up to 1 g/L DMT into mono-methyl terephthalate (MMT). A putative DMTase (RS34275) was identified for this conversion. R. jostii RPET also demonstrates the ability to convert DMT into MMT and to utilize MMT for its cellular growth via the terephthalate pathway. A putative MMTase (RS21885) as the sole enzyme was identified for the conversion of MMT into terephthalate in the RPET strain. In addition, we successfully produced lycopene and lipids from an engineered RPET strain using DMT as a substrate. Our findings will facilitate future DMT bioremediation and bio-upcycling of DMT-associated plastics, enabling the production of value-added products.
Biodegradation↗
Impact of humidity on gas transport in polybenzimidazole membranes
Polybenzimidazoles (PBIs) are promising materials for high temperature H 2 /CO 2 separation in applications such as steam reforming and pre-combustion carbon capture where significant amounts of water are often present. However, PBIs are hydrophilic, and the impact of humidity on PBI gas separation properties is relatively unexplored. Furthermore, opportunity exists to elucidate the interplay between plasticization, free volume, and gas transport in glassy polymer membranes such as PBIs. Here, this study investigates the effect of humidity on H 2 , O 2 , and CO 2 permeabilities at 35 °C in a commercial PBI and two sulfone-containing PBIs. Water uptake significantly reduces PBI gas permeabilities at low humidities due to competitive sorption and antiplasticization. At high humidities, plasticization increases the permeabilities of larger gases in more hydrophilic PBIs. Effective fractional free volumes evaluated from gas permeation data and previously reported water sorption and dilation data suggest water plasticizes PBIs by increasing accessible free volume via enhanced molecular dynamics rather than by creating new free volume cavities.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Regulation of GTPase function by autophosphorylation
Explore the source record for details and available documents.
Johnson, Christian W.↗
Origin of high optical contrast in zinc-zinc oxide electrodeposits for dynamic windows
The control of solar light and heat emission through windows is an important strategy for increasing the energy efficiency of buildings. Reversible Zn electrodeposition has recently emerged as a promising method for constructing electronically tintable robust dynamic windows. In Zn electrodeposits formed from dimethyl sulfoxide (DMSO) electrolytes during device tinting, we observe extraordinary absorption that is in excess of what is predicted by the Beer-Lambert law for a uniform Zn thin film. Here, the charge required to electroplate these films is abnormally low, significantly less than previously reported dynamic windows based on reversible metal electrodeposition, which facilitates the construction of large-area devices that switch uniformly. Finite-difference time-domain (FDTD) simulations are used to investigate the origin of this enhanced absorption, which arises from plasmonic effects among the Zn nanoparticles and ZnO dendrites in the film. The dielectric ZnO dendrites promote absorption via slit-like Zn-dielectric-Zn structures that from hybrid surface plasmon resonance at metal walls. Through these investigations, we provide design principles to construct low-charge and high-contrast metal and metal oxide-based dynamic windows.
29 ENERGY PLANNING, POLICY, AND ECONOMY↗
Earth: Extinguishing anthropogenic risks through harmonization
Not Available
54 ENVIRONMENTAL SCIENCES↗
Conditional guide RNA deactivation by mRNA and small molecule triggers in Saccharomyces cerevisiae
CRISPR interference (CRISPRi) technologies have revolutionized bioengineering by providing precise tools for gene expression modulation, enabling targeted gene perturbation and metabolic pathway optimization. Despite these advances, achieving dynamic control over gene expression by CRISPR-based regulation remains a challenge due to its inherently static nature. Utilizing toehold-mediated strand displacement and ligand-responsive ribozymes (aptazymes), this study introduces switchable guide RNAs (gRNAs) that facilitate tunable gene expression mediated by mRNA or small molecule signals. We demonstrate complete silencing of gRNA via strategically designed 5’ or 3’ extensions that impede the gRNA spacer or the dCas9 handle, with subsequent restoration of function through sequestration or cleavage of the obstructive sequence. The resulting toehold-embedded or aptazyme-embedded gRNAs can be deactivated by specific signals, including two full-length translatable mRNAs and two small molecule triggers, thereby lifting CRISPRi repression on targeted genes. This modular approach allows for gRNA-based biocomputing through multi-layer or multi-input genetic logic gates in Saccharomyces cerevisiae . Offering a versatile strategy for post-CRISPR regulation in response to environmental signals or cellular states, this methodology expands the toolkit in eukaryotic systems for reversible control of gene expression.
Aptazyme↗
Investigation of thermal hydraulic behavior of the High Temperature Test Facility's lower plenum via large eddy simulation
A high-fidelity computational fluid dynamics (CFD) analysis was performed using the Large Eddy Simulation (LES) model for the lower plenum of the High–Temperature Test Facility (HTTF), a ¼ scale test facility of the modular high temperature gas-cooled reactor (MHTGR) managed by Oregon State University. In most next–generation nuclear reactors, thermal stress due to thermal striping is one of the risks to be curiously considered. This is also true for HTGRs, especially since the exhaust helium gas temperature is high. In order to evaluate these risks and performance, organizations in the United States led by the OECD NEA are conducting a thermal hydraulic code benchmark for HTGR, and the test facility used for this benchmark is HTTF. HTTF can perform experiments in both normal and accident situations and provide high-quality experimental data. However, it is difficult to provide sufficient data for benchmarking through experiments, and there is a problem with the reliability of CFD analysis results based on Reynolds–averaged Navier–Stokes to analyze thermal hydraulic behavior without verification. To solve this problem, high-fidelity 3-D CFD analysis was performed using the LES model for HTTF. It was also verified that the LES model can properly simulate this jet mixing phenomenon via a unit cell test that provides experimental information. As a result of CFD analysis, the lower the dependency of the sub-grid scale model, the closer to the actual analysis result. In the case of unit cell test CFD analysis and HTTF CFD analysis, the volume-averaged sub-grid scale model dependency was calculated to be 13.0% and 9.16%, respectively. As a result of HTTF analysis, quantitative data of the fluid inside the HTTF lower plenum was provided in this paper. As a result of qualitative analysis, the temperature was highest at the center of the lower plenum, while the temperature fluctuation was highest near the edge of the lower plenum wall. The power spectral density of temperature was analyzed via fast Fourier transform (FFT) for specific points on the center and side of the lower plenum. FFT results did not reveal specific frequency-dominant temperature fluctuations in the center part. It was confirmed that the temperature power spectral density (PSD) at the top increased from the center to the wake. The vortex was visualized using the well-known scalar Q-criterion, and as a result, the closer to the outlet duct, the greater the influence of the mainstream, so that the inflow jet vortex was dissipated and mixed at the top of the lower plenum. Additionally, FFT analysis was performed on the support structure near the corner of the lower plenum with large temperature fluctuations, and as a result, it was confirmed that the temperature fluctuation of the flow did not have a significant effect near the corner wall. In addition, the vortices generated from the lower plenum to the outlet duct were identified in this paper. It is considered that the quantitative and qualitative results presented in this paper will serve as reference data for the benchmark.
97 MATHEMATICS AND COMPUTING↗
The JSNS 2 detector
The JSNS 2 (J-PARC Sterile Neutrino Search at J-PARC Spallation Neutron Source) experiment aims to search for oscillations involving a sterile neutrino in the eV 2 mass-splitting range. The experiment will search for the appearance of electron antineutrinos oscillated from muon antineutrinos. The electron antineutrinos are detected via the inverse beta decay process using a liquid scintillator detector. A 1 MW beam of 3 GeV protons incident on a spallation neutron target produces an intense and pulsed neutrino source from pion, muon, and kaon decay at rest. The JSNS detector is located 24 m away from the neutrino source and began operation from June 2020. The detector contains 17 tonnes of gadolinium (Gd) loaded liquid scintillator (LS) in an acrylic vessel, as a neutrino target. It is surrounded by 31 tonnes of unloaded LS in a stainless steel tank. Optical photons produced in LS are viewed by 120 R7081 Hamamatsu 10-inch Photomultiplier Tubes (PMTs). In this study, we describe the JSNS detector design, construction, and operation.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Combined analysis of HPK 3.1 LGADs using a proton beam, beta source, and probe station towards establishing high volume quality control
The upgrades of the CMS and ATLAS experiments for the high luminosity phase of the Large Hadron Collider will employ precision timing detectors based on Low Gain Avalanche Detectors (LGADs). We present a suite of results combining measurements from the Fermilab Test Beam Facility, a beta source telescope, and a probe station, allowing full characterization of the HPK type 3.1 production of LGAD prototypes developed for these detectors. We demonstrate that the LGAD response to high energy test beam particles is accurately reproduced with a beta source. Finally, we further establish that probe station measurements of the gain implant accurately predict the particle response and operating parameters of each sensor, and conclude that the uniformity of the gain implant in this production is sufficient to produce full-sized sensors for the ATLAS and CMS timing detectors.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Second gadolinium loading to Super-Kamiokande
The first loading of gadolinium (Gd) into Super-Kamiokande in 2020 was successful, and the neutron capture efficiency on Gd reached 50%. To further increase the Gd neutron capture efficiency to 75%, 26.1 tons of Gd 2 (SO 4 ) 3 ∙ 8H 2 O was additionally loaded into Super-Kamiokande (SK) from May 31 to July 4, 2022. As the amount of loaded Gd 2 (SO 4 ) 3 ∙ 8H 2 O was doubled compared to the first loading, the capacity of the powder dissolving system was doubled. We also developed new batches of gadolinium sulfate with even further reduced radioactive impurities. In addition, a more efficient screening method was devised and implemented to evaluate these new batches of Gd 2 (SO 4 ) 3 ∙ 8H 2 O. Following the second loading, the Gd concentration in SK was measured to be 333.5 ± 2.5 ppm via an Atomic Absorption Spectrometer (AAS). From the mean neutron capture time constant of neutrons from an Am/Be calibration source, the Gd concentration was independently measured to be 332.7 ± 6.8(sys.) ± 1.1(stat.) ppm, consistent with the AAS result. Furthermore, during the loading the Gd concentration was monitored continually using the capture time constant of each spallation neutron produced by cosmic-ray muons, and the final neutron capture efficiency was shown to become 1.5 times higher than that of the first loaded phase, as expected.
Gadolinium↗
Evaluation of the performance of event reconstruction algorithms in the JSNS 2 experiment using a 252 Cf calibration source
JSNS 2 investigates short-baseline neutrino oscillations using a 24-meter baseline and a 17-tonne Gd-loaded liquid scintillator target. Accurate event-reconstruction algorithms are crucial for analyzing experimental data. The algorithms undergo meticulous validation through calibration with a 252 Cf source. This paper outlines the methodology and evaluates the reconstruction performance, focusing on neutrino interactions up to approximately 50 MeV for sterile neutrino searches. Both 252 Cf and Michel electron events are studied to evaluate reconstruction accuracy. The analysis concludes that the uncertainty of the fiducial volume, with an appropriate correction, is much less than the requirement of JSNS 2 requirement (10%). Furthermore, the energy resolution is measured to be 3.3 ± 0.1% for the Michel electron endpoint and 4.3 ± 0.1% for the n-Gd peak in the central region.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
TexAT detector upgrade for 14 O($α$, $p$) 17 F cross section measurement
A direct cross-section measurement of the 14 O($α$, $p$) 17 F reaction is important to understand the light curves of x-ray bursts. The measurement will be performed using the Texas Active Target TPC version 2 (TexAT_v2). The TexAT_v2 aims at measuring lower energy protons from the reaction than the original TexAT. Newly developed silicon and CsI(Tl) detector arrays are added at the left, right and bottom of a modified field cage to increase its detection efficiency. Furthermore, this paper describes the overall specifications and two commissioning experiments performed at Texas A&M University.
14O(α, p)17F↗