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DOE OSTI2024

Force Field X: A computational microscope to study genetic variation and organic crystals using theory and experiment

Force Field X (FFX) is an open-source software package for atomic resolution modeling of genetic variants and organic crystals that leverages advanced potential energy functions and experimental data. FFX currently consists of nine modular packages with novel algorithms that include global optimization via a many-body expansion, acid–base chemistry using polarizable constant-pH molecular dynamics, estimation of free energy differences, generalized Kirkwood implicit solvent models, and many more. Applications of FFX focus on the use and development of a crystal structure prediction pipeline, biomolecular structure refinement against experimental datasets, and estimation of the thermodynamic effects of genetic variants on both proteins and nucleic acids. The use of Parallel Java and OpenMM combines to offer shared memory, message passing, and graphics processing unit parallelization for high performance simulations. Overall, the FFX platform serves as a computational microscope to study systems ranging from organic crystals to solvated biomolecular systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

A meshless stochastic method for Poisson–Nernst–Planck equations

A plethora of biological, physical, and chemical phenomena involve transport of charged particles (ions). Its continuum-scale description relies on the Poisson–Nernst–Planck (PNP) system, which encapsulates the conservation of mass and charge. The numerical solution of these coupled partial differential equations is challenging and suffers from both the curse of dimensionality and difficulty in efficiently parallelizing. We present a novel particle-based framework to solve the full PNP system by simulating a drift–diffusion process with time- and space-varying drift. We leverage Green’s functions, kernel-independent fast multipole methods, and kernel density estimation to solve the PNP system in a meshless manner, capable of handling discontinuous initial states. The method is embarrassingly parallel, and the computational cost scales linearly with the number of particles and dimension. We use a series of numerical experiments to demonstrate both the method’s convergence with respect to the number of particles and computational cost vis-à-vis a traditional partial differential equation solver.

Chemistry↗

DOE OSTI2024

Study of magnetic reconnection at low- β using laser-powered capacitor coils

Magnetic reconnection is a ubiquitous fundamental process in space and astrophysical plasmas that rapidly converts magnetic energy into some combination of flow energy, thermal energy, and non-thermal energetic particles. Over the past decade, a new experimental platform has been developed to study magnetic reconnection using strong coil currents powered by high-power lasers at low plasma beta, typical conditions under which reconnection is energetically important in space and astrophysics. KJ-class lasers were used to drive parallel currents to reconnect MG-level magnetic fields in a quasi-axisymmetric geometry, similar to the magnetic reconnection experiment or MRX, and thus this platform is named micro-MRX. This presentation summarizes two major findings from micro-MRX: direct measurement of accelerated electrons and observation of ion acoustic waves during anti-parallel reconnection. The angular dependence of the measured electron energy spectrum and the resulting accelerated energies, supported by particle-in-cell simulations, indicate that direct acceleration by the out-of-plane reconnection electric field is at work. Furthermore, a sudden onset of ion acoustic bursts has been measured by collective Thomson scattering in the exhaust of magnetic reconnection, followed by electron acoustic bursts with electron heating and bulk acceleration. These results demonstrate that the micro-MRX platform offers a novel and unique approach to study magnetic reconnection in the laboratory in addition to the capabilities provided by traditional magnetized plasma experiments such as MRX and the upcoming Facility for Laboratory Reconnection experiments (FLARE). Future prospects to study other particle acceleration mechanisms and ion acoustic waves from magnetic reconnection are also discussed.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Drift kinetic electrostatic simulations of the edge localized mode heat pulse

In the present work, electrostatic drift kinetic simulations of parallel plasma transport within the tokamak scrape-off layer (SOL) are conducted using the COGENT code. The SOL configuration is represented in one-dimensional slab geometry, incorporating a heat source localized in the midplane. The heat source parameters correspond to those characterizing edge-localized modes observed in the Joint European Torus (JET) tokamak. The numerical model includes kinetic treatment of both ions and electrons, a simplified model for the gyrokinetic Poisson equation that allows one to step over short time scales associated with fast electrostatic shear Alfvèn waves, and the logical sheath boundary condition (LSBC) that enforces global system quasineutrality. A third-order accurate LSBC is derived to be consistent with the third-order accurate upwind advection scheme utilized in the code, and it was shown to noticeably impact the simulation results, especially parallel heat flux at the target plate. The findings of this study are in agreement with results from preceding fluid and kinetic simulations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2024

Modeling performance of data collection systems for high-energy physics

Exponential increases in scientific experimental data are outpacing silicon technology progress, necessitating heterogeneous computing systems—particularly those utilizing machine learning (ML)—to meet future scientific computing demands. The growing importance and complexity of heterogeneous computing systems require systematic modeling to understand and predict the effective roles for ML. We present a model that addresses this need by framing the key aspects of data collection pipelines and constraints and combining them with the important vectors of technology that shape alternatives, computing metrics that allow complex alternatives to be compared. For instance, a data collection pipeline may be characterized by parameters such as sensor sampling rates and the overall relevancy of retrieved samples. Alternatives to this pipeline are enabled by development vectors including ML, parallelization, advancing CMOS, and neuromorphic computing. By calculating metrics for each alternative such as overall F1 score, power, hardware cost, and energy expended per relevant sample, our model allows alternative data collection systems to be rigorously compared. We apply this model to the Compact Muon Solenoid experiment and its planned high luminosity-large hadron collider upgrade, evaluating novel technologies for the data acquisition system (DAQ), including ML-based filtering and parallelized software. The results demonstrate that improvements to early DAQ stages significantly reduce resources required later, with a power reduction of 60% and increased relevant data retrieval per unit power (from 0.065 to 0.31 samples/kJ). However, we predict that further advances will be required in order to meet overall power and cost constraints for the DAQ.

Olin-Ammentorp, Wilkie (ORCID:0000000224729862)↗

DOE OSTI2025

Off-state magnetoresistance in long-channel germanium Schottky-barrier MOSFETs

An increasing magnetic field perpendicular to an undoped semiconductor surface at low temperature is known to strengthen the binding of localized electrons to stationary ions, as the wavefunction's tails evolve from exponential to Gaussian. It is also known that application of a high bias voltage to a depleted semiconductor can liberate bound charge and induce a large drop in electrical resistance. We connect these established results to experimental electrical transport measurements on off-state germanium Schottky-barrier metal–oxide–semiconductor field-effect transistor (MOSFETs) with an aluminum oxide insulating dielectric and platinum germanide contacts. We make measurements at the three distinct orientations of the magnetic field with respect to the substrate and the current. At 6 K, we observe sharp attenuation of current by more than 2 orders of magnitude, within 60 mT, at a crossover magnetic field perpendicular to the substrate. A 1 T magnetic field attenuates the current by more than 4 orders of magnitude. The strength of the attenuation and the value of the crossover field are controlled by both the gate–source and drain–source voltages. The attenuation is much weaker when the magnetic field is parallel to the current. Finally, we orient the magnetic field parallel to the substrate, but perpendicular to the current, allowing us to distinguish charge hopping at the oxide interface from charge hopping in the bulk. In conclusion, this large off-state magnetoresistance can be exploited for cryogenic magnetic- and photo-detection, and for high-bias, low-leakage MOSFETs.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2025

Quadrupolar density structures in driven magnetic reconnection experiments with a guide field

Magnetic reconnection is a ubiquitous process in plasma physics, driving rapid and energetic events such as coronal mass ejections. Reconnection between magnetic fields with arbitrary shear can be decomposed into an anti-parallel reconnecting component and a non-reconnecting guide-field component, which is parallel to the reconnecting electric field. This guide field modifies the structure of the reconnection layer and the reconnection rate. We present results from experiments on the MAIZE pulsed-power generator (500 kA peak current, 200 ns rise time), which use two exploding wire arrays, tilted in opposite directions, to embed a guide field in the plasma flows with a relative strength b≡B g /B rec =0, 0.4, or 1. The reconnection layers in these experiments have widths that are less than the ion skin depth, d i =c/ω pi , indicating the importance of the Hall term, which generates a distinctive quadrupolar magnetic field structure along the separatrices of the reconnection layer. Using laser imaging interferometry, we observe quadrupolar structures in the line-integrated electron density, consistent with the interaction of the embedded guide field with the quadrupolar Hall field. Our measurements extend over much larger length scales (40d i ) at higher β (∼1) than previous experiments, providing an insight into the global structure of the reconnection layer.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

On transport of electrons in a magnetized plasma sheath

Electron trajectories are analyzed in the plasma sheath region in a magnetic field that intersects the surface at a shallow angle. Depending on the size of the Debye width relative to the electron gyroradius, λ D /ρ e , an electron either drifts in the sheath electric field or follows a sequence of reflections (“bouncing”) on the surface before reversing its parallel velocity. For thin sheath, λ D /ρ e ≪ 1, the conservation of the electron magnetic moment can be violated, depending on the ratio of the electron perpendicular and parallel velocities V ⊥ /V || and the magnetic field pitch angle with respect to the surface. Small-scale waviness of the surface can strongly amplify this effect, leading to violation of the magnetic moment conservation even for λ D /ρ e ≳ 1, which opens a channel of anomalous radial transport for electrons in plasma devices.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2026

Effects of external magnetic fields on the multi-mode Rayleigh–Taylor instability

The magneto-Rayleigh–Taylor instability (mRTI) is a key process in inertial confinement fusion and is thought to be widespread in the interstellar medium, where it can concentrate plasma into discrete structures. We present resistive MHD simulations of the nonlinear evolution of multi-mode mRTI in both two and three dimensions, examining the effects of uniform external magnetic fields oriented either parallel or perpendicular to the initial interface. In both 2D and 3D, weak parallel fields enhance mixing-zone growth, whereas stronger fields suppress it. For perpendicular fields, growth is initially inhibited but becomes enhanced at later times. These behaviors arise from magnetic tension, which modifies flow anisotropy, buoyancy, drag, and vortex dynamics. The interplay of these mechanisms governs the distinct ways in which magnetic fields influence mRTI evolution.

Flow instabilities↗

DOE OSTI2026

Nonlinear magnetohydrodynamic modeling of ideal ballooning modes in high- β Wendelstein 7-X plasmas

We present nonlinear magnetohydrodynamic (MHD) simulations of high- β Wendelstein 7-X plasmas using the stellarator extension of the M3D- C 1 code, building on the recent work that shows benign saturation of ideal ballooning modes above the designed β limit in the standard configuration [Zhou et al., Phys. Rev. Lett. 133, 135102 (2024)]. First, we examine the results' sensitivity to the parallel thermal conductivity. It is found that while an increased parallel conductivity reduces the linear growth rate, the saturated pressure profile is barely affected. Second, we consider the dependence on the profile shape. It is shown that an equilibrium with a peaked pressure profile and lower β is subject to more significant change than a broad profile with higher β and a larger growth rate, suggesting that benign saturation, or nonlinear stability, is not guaranteed and not dictated by linear growth. Third, we study the influence of the magnetic configuration, with the equilibrium rotational transform varied by adjusting the planar coil current. With similar growth rates, similar magnitudes of profile change are found regardless of the presence of a low-order resonance, which implies that the saturation mechanism is not specific to a resonant or non-resonant mode. These results indicate that MHD stability should still be treated seriously in stellarator operation and design, for which nonlinear modeling using tools like M3D- C 1 can play an instrumental role.

Zhou, Yao [Shanghai Jiao Tong University (China)] ↗

DOE OSTI2026

Neoclassical transport and profile prediction in transport barriers

Strong gradient regions in tokamaks, such as the pedestal or internal transport barriers, are regions of reduced turbulence where neoclassical transport can play a dominant role. However, standard neoclassical transport theory assumes that the gradient length scales of density, temperature, and potential are of the order of the system size. In the pedestal, gradient length scales are much shorter and are measured to be of the order of the ion poloidal gyroradius. We present an extension of neoclassical theory that is applicable in transport barriers of large aspect ratio tokamaks. We show that particle and momentum transport are connected in such a way that a source of parallel momentum can drive a significant neoclassical ion particle flux. In strong gradient regions, density, electric potential, mean parallel flow, and ion temperature are shown to no longer be flux functions. Instead, they have a small but important poloidally varying piece that modifies the transport equations to lowest order. This introduces a nonlinearity in the transport problem through the coupling with quasineutrality that yields multiple co-existing solutions when solving for the plasma profiles. The different solutions could be connected to low and high transport states and jumps between solutions could provide a new neoclassical explanation for H-L back-transitions.

Trinczek, Silvia [Princeton Plasma Physics Laborat↗

DOE OSTI2025

A twist grain boundary phase in aqueous solutions of the nucleic acid tetramer GTAC

At high concentration, long Watson/Crick (WC) double-helixed DNA forms columnar crystal or liquid crystal phases of linear, parallel duplex chains packed on periodic lattices. This can also be a structural motif of short NA oligomers such as the 5’-GTAC-3’ studied here, which makes four-base WC duplexes having hydrophobic blunt ends. End-to-end aggregation then assembles these duplexes into columns and columnar phases are stabilized, in spite of breaks in the double helix every four bases. But the new degrees of freedom introduced by such breaks also enable opportunities for a more diverse palette of self-assembly modes, producing striking self-assemblies of DNA that would not be achievable with contiguous polymers. These include recently reported three-dimensional (3D) periodic low-density nanoscale networks of GCCG, and the twist grain boundary (TGB) phase presented here. In the TGB, columns of GTAC pairs assemble into monolayer sheets in which the duplex columns are mutually parallel. However, unlike in the columnar crystals, these sheets stack in helical fashion into lamellar arrays in which the column axis of each layer is rotated through a 60° angle with respect to the columns in neighboring layers. This assembly of DNA is unique in that it the fills a 3D volume wherein the major grooves of columns in each layer mutually enter and interlock with the major grooves of columns in neighboring layers. This locking is optimized by small adjustments in structure enabled by the breaks in the duplex backbones.

DNA↗

DOE OSTI2024

Core inductive electric field during sawtooth crashes on DIII-D

Sawtooth crashes on tokamak plasmas exhibit relaxation much faster than resistive time scales via a mechanism not fully understood. Using core magnetic measurements from the Radial Interferometer-Polarimeter (RIP) diagnostic on the DIII-D tokamak, Grad–Shafranov equilibria constrained by internal magnetic measurements that have high time resolution (<1μs) can be computed, allowing analysis of how equilibrium parameters such as safety factor q, current density J, and parallel electric field E ∥ , particularly on-axis, evolve. At the sawtooth crash, on-axis safety factor q 0 is observed to rise by 5% but remain below 1 throughout the cycle, and on-axis current density J 0 is observed to drop by 5%. On-axis parallel electric field E ∥ (0) is found to be balanced by ηJ 0 (resistivity times on-axis current density) except during the 200 µs crash period, where E ∥ (0) reaches 22 V m –1 , exceeding ηJ 0 by a factor of more than 2000. These first measurements in tokamak plasmas verify that generalized Ohm's law is not balanced during the crash by resistive effects alone; this is a finding expected due to the relaxation being much faster than resistive timescales. As a result, measurement of the electric field during the tokamak sawtooth serves to illuminate the physical mechanisms at work.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2024

Determining the tilt of the Raman laser beam using an optical method for atom gravimeters

The tilt of a Raman laser beam is a major systematic error in precision gravity measurement using atom interferometry. The conventional approach to evaluating this tilt error involves modulating the direction of the Raman laser beam and conducting time-consuming gravity measurements to identify the error minimum. In this work, we demonstrate a method to expediently determine the tilt of the Raman laser beam by transforming the tilt angle measurement into characterization of parallelism, which integrates the optical method of aligning the laser direction, commonly used in freely falling corner-cube gravimeters, into an atom gravimeter. A position-sensing detector (PSD) is utilized to quantitatively characterize the parallelism between the test beam and the reference beam, thus measuring the tilt precisely and rapidly. After carefully positioning the PSD and calibrating the relationship between the distance measured by the PSD and the tilt angle measured by the tiltmeter, we achieved a statistical uncertainty of less than 30 µrad in the tilt measurement. Furthermore, we compared the results obtained through this optical method with those from the conventional tilt modulation method for gravity measurement. The comparison validates that our optical method can achieve tilt determination with an accuracy level of better than 200 µrad, corresponding to a systematic error of 20 µGal in g measurement. This work has practical implications for real-world applications of atom gravimeters.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2024

Investigation of pedestal parameters and divertor heat fluxes in small ELM regimes in DIII-D

Abstract Divertor heat flux and its correlation with pedestal parameters within various small edge localized mode (ELM) regimes, including high beta poloidal, type-II and ELMs with negative triangularity H-modes were investigated in DIII-D. The parallel energy fluences of type-II and high beta poloidal small ELM regimes fall below the linear scaling with pedestal electron pressure for type-I ELMs put forward in Eich et al 2017 ( Nucl. Mater. Energy 12 84–90). The negative triangularity of H-mode ELMs follow the Eich scaling for type-I ELMs. The parallel heat flux and total heat loads to the divertor were determined using high-time resolution infrared thermography, while pedestal parameters were obtained through self-consistent kinetic equilibrium reconstructions. Linear regressions for the type-II and high beta poloidal regimes demonstrate that an equivalent 7.5 MA small ELM scenario in ITER would fall below the ~5 MJ m − 2 leading edge melting limit for tungsten (Gunn et al 2017 Nucl. Fusion 57 046025). Utilizing fast thermography, the scrape-off layer power fall-off length for both inter-ELM and intra-ELM was determined and compared to the Eich scaling with poloidal magnetic field in Eich et al (ASDEX Upgrade Team and JET EFDA Contributors 2013 Nucl. Fusion 53 093031). Except for the high beta poloidal scenario, all the small ELM regimes during both inter- and intra-ELM periods had power fall-off lengths ( λ q ) larger then would be expected from the B pol , MP − 1 scaling associated with type-I ELMs, signifying their potential in managing heat loads and offering a solution for core–edge integration.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2024

First experimental confirmation of island SOL geometry effects in a high radiation regime on W7-X

Abstract This work characterizes the detachment behavior and radiation characteristics of the lowiota configuration in the Wendelstein 7-X (W7-X) stellarator. The island scrape-off layer (SOL) of thelow iota has a poloidal mode number of 6 islands surrounding the last closed flux surface (LCFS).The island geometry of the low iota configuration is significantly different to that of the standardmagnetic field configuration, whose detachment characteristics have already been described in previouswork[2, 3, 4]. Experimental results show that the radiation pattern in the low iota configurationis starkly different to that of the standard magnetic field configuration, with radiation concentratedat the island SOL O-points, rather than the X-points. Additionally, this O-point localized radiationpattern is associated with unstable detachment, with both radiation oscillations in experiments and thelack of a self-consistent plasma solution at high radiated power fraction in EMC3-Eirene simulations.EMC3-Eirene simulations are used to understand the radiation distribution. It was found that the O-point localized radiation arises first from local impurity accumulation near the parallel flow stagnation,which is located close to the geometrical center of the island (”O-point”). The local cooling in thisregion leads to plasma condensation in the islands in closest magnetic connection to the divertor targetplates. The heat source to this region of the island, which is thermally isolated from the upstream heatsource in terms of parallel transport, must arise via perpendicular heat transport. This heat source isexpected to be large for the low iota configuration due to its very small internal island field line pitch.This work highlights the importance (complementary to previous work, e. g. [5, 6]) of the internalisland field line pitch not only on the radiation pattern, but also the detachment performance of theisland divertor.

Winters, Victoria (ORCID:0000000181087774)↗

DOE OSTI2024

Evaluation of SPARC divertor conditions in H-mode operation using SOLPS-ITER

The predicted divertor conditions for the SPARC tokamak are calculated using SOLPS-ITER for a range of scrape-off-layer (SOL) heat flux widths λ q , input powers, and particle fueling locations. Under H-mode scenario conditions with an upstream separatrix density of 1 x 10 20 m -3 , the most conservative range of λ q extrapolations ( 0.15 mm) results in extremely high unmitigated particle and energy fluxes to the divertor, both under full field (12.2 T) and power (P SOL = 29 MW) conditions, and 2/3 field with P SOL = 10 MW. Increasing the cross-field SOL diffusivities by 2–10× reduces the magnitude of the mitigation challenge, however strategies such as impurity seeding or strike-point-sweeping will likely still be required. A combination of steady-state and time-dependent SOLPS-ITER simulations are used to map out phase space diagrams of upstream and divertor conditions. The simulations include parallel currents but neglect cross-field drifts. At low upstream density the inner and outer divertor conditions are highly asymmetric, with a large temperature difference and significant heat fluxes driven by parallel currents. The solution has sharp bifurcations with a region of hysteresis, depending on whether the initial state is at a low or high density. This behavior is observed even when the fueling location, cross-field diffusivity, and impurity level is changed, although the density window with asymmetry is reduced with increasing diffusivity. The addition of neon impurity seeding reduces the divertor heat fluxes, but also causes a drop in the upstream electron density with fixed particle throughput. This drop can be counteracted by increased main ion throughput, however too much neon results in a back transition into the asymmetric divertor regimes suggesting a need for control of both main ion and impurity seeding levels to achieve a desired divertor state.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

Measurements of the polarization of several instabilities in the DIII-D tokamak

Recently, a method to infer the polarization of modes with frequencies much less than the ion cyclotron frequency was published [X.D. Du et al., Phys. Rev. Lett. 132 (2024) 215101]. The method uses measurements of electron temperature and density fluctuations δTₑ and δnₑ at the same spatial position to infer the local ratio of “acoustic polarization,” |δϕ ∥ |/(|δϕ ∥ |+|δψ|), where δϕ ∥ is the effective parallel potential and δψ is related to the parallel magnetic vector potential A ∥ . This paper summarizes key formulas, with emphasis on their range of validity, and elaborates on the workflow required to infer the acoustic polarization from experimental data. The drift-acoustic polarization of ellipticity-induced, toroidicity-induced, and reversed shear Alfvén eigenmodes is nearly zero, as expected for modes with predominately shear-Alfvénic polarization. The polarization of beta-induced Alfvén eigenmodes contains an acoustic component that increases with poloidal wave number. “Low frequency modes,” (instabilities that appear transiently when the minimum of the safety factor qₘᵢₙ passes through rational values) have large and highly variable acoustic polarization. In both experiment and simulation, fishbones have non-zero acoustic polarization that increases as the mode chirps down in frequency.

Alfven eigenmode↗