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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 307 records · Page 17

Constructing high complexity synthetic libraries of long ORFs using in vitro selection

We present a method that can significantly increase the complexity of protein libraries used for in vitro or in vivo protein selection experiments. Protein libraries are often encoded by chemically synthesized DNA, in which part of the open reading frame is randomized. There are, however, major obstacles associated with the chemical synthesis of long open reading frames, especially those containing random segments. Insertions and deletions that occur during chemical synthesis cause frameshifts, and stop codons in the random region will cause premature termination. These problems can together greatly reduce the number of full-length synthetic genes in the library. We describe a strategy in which smaller segments of the synthetic open reading frame are selected in vitro using mRNA display for the absence of frameshifts and stop codons. These smaller segments are then ligated together to form combinatorial libraries of long uninterrupted open reading frames. This process can increase the number of full-length open reading frames in libraries by up to two orders of magnitude, resulting in protein libraries with complexities of greater than 10(13). We have used this methodology to generate three types of displayed protein library: a completely random sequence library, a library of concatemerized oligopeptide cassettes with a propensity for forming amphipathic alpha-helical or beta-strand structures, and a library based on one of the most common enzymatic scaffolds, the alpha/beta (TIM) barrel. Copyright 2000 Academic Press.

Non-NASA Center↗

Direct estimation of the density of states for fermionic systems

Simulating time evolution is one of the most natural applications of quantum computers and is thus one of the most promising prospects for achieving practical quantum advantage. Here, we develop quantum algorithms to extract thermodynamic properties by estimating the density of states (DOS), which is a central object in quantum statistical mechanics. We introduce several key innovations that significantly improve the practicality and extend the generality of previous techniques. First, our approach allows one to estimate the DOS only for a specific subspace of the full Hilbert space. This is crucial for fermionic systems, since both canonical and grand canonical ensemble thermal equilibrium properties depend on subspaces of fixed number. Second, in our approach, by time evolving very simple, random initial states, such as randomly chosen computational basis states, we can exactly recover the DOS on average. Third, due to circuit-depth limitations, we only reconstruct the DOS up to a convolution with a Gaussian window—thus all imperfections that shift the energy levels by less than the width of the convolution window will not significantly affect the estimated DOS. For these reasons, we find the approach is a promising candidate for early quantum advantage as even short-time, noisy dynamics can yield a semiquantitative reconstruction of the DOS (convolution with a broad Gaussian window), while early fault-tolerant devices will likely enable higher-resolution DOS reconstruction through longer time evolutions. We demonstrate the practicality of our approach in representative Fermi-Hubbard and spin models and indeed find that our approach is highly robust against algorithmic errors in the time evolution and against gate noise. We further demonstrate that our approach is compatible with noisy intermediate-scale quantum (NISQ) computing NISQ-friendly variational techniques, introducing and leveraging a technique for variational time evolution.

97 MATHEMATICS AND COMPUTING↗

An inexpensive and effective method for calculating the strength of randomly reinforced fiber composites

Planar randomly reinforced fiber composites (PRRFC) is pseudoisotropic laminate with large number of ply orientation combinations where strength is function of these ply orientation combinations. Laminate theory can be applied to determine strength of PRRFC, and in conjunction with composite micro- and macromechanics can predict mechanical properties of PRRFC's with any fiber/matrix combination.

Chamis, C. C.↗

A Monte Carlo investigation of thrust imbalance of solid rocket motor pairs

A technique is described for theoretical, statistical evaluation of the thrust imbalance of pairs of solid-propellant rocket motors (SRMs) firing in parallel. Sets of the significant variables, determined as a part of the research, are selected using a random sampling technique and the imbalance calculated for a large number of motor pairs. The performance model is upgraded to include the effects of statistical variations in the ovality and alignment of the motor case and mandrel. Effects of cross-correlations of variables are minimized by selecting for the most part completely independent input variables, over forty in number. The imbalance is evaluated in terms of six time - varying parameters as well as eleven single valued ones which themselves are subject to statistical analysis. A sample study of the thrust imbalance of 50 pairs of 146 in. dia. SRMs of the type to be used on the space shuttle is presented. The FORTRAN IV computer program of the analysis and complete instructions for its use are included. Performance computation time for one pair of SRMs is approximately 35 seconds on the IBM 370/155 using the FORTRAN H compiler.

Sforzini, R. H.↗

Stimulus novelty, task relevance and the visual evoked potential in man

The visual evoked potential (VEP) to rare, task-relevant (counted) numerical stimuli was compared with VEPs to rare, task-irrelevant stimuli, both being randomly interspersed within a sequence of tachistoscopically-flashed background numbers. These task-irrelevant stimuli were of two classes: (1) easily recognizable (e.g., simple geometric shapes) and (2) completely novel (i.e., complex, colorful abstract-type drawings which were unrecognizable). It was found that such novel stimuli did, in fact, evoke large P3 waves, but they had different scalp distributions from those which followed the task-relevant stimuli. This indicates that at least two types of late positive P3 waves exist, differing both in brain source and psychological correlates.

Courchesne, E.↗

The HEAO-1 soft X-ray survey of cataclysmic variable stars

A survey of the soft X-ray emission from 206 cataclysmic variable stars, including dwarf novae in optically quiescent states, classical novae, recurrent novae, nova-like objects and polars, is reported. This is an extension of a previous survey of dwarf novae in outbursts by Cordova et al. (1980). The number of surveyed stars that correspond to features greater than 2 sigma is not in excess of the number of chance coincidences expected on the basis of a random sample of positions distributed over the entire sky. While a few cataclysmic variables have been previously identified as X-ray sources, the results of this survey imply that cataclysmic variables as a class must be, at best, low-luminosity X-ray sources with fluxes below the HEAO-1 A2 detector's sensitivity limit of a few times 10 to the -11th erg/sq cm-s in the energy range 0.1-3 keV. The X-ray luminosities of the cataclysmic variables are consistent with predictions from disk accretion models, provided that a wide range of accretion rates apply.

Cordova, F. A.↗

Radiative transfer in astronomical masers. III - Filamentary masers

The complete solution of a filamentary maser is presented. An integral equation and an iterative procedure are developed to calculate and solve the contribution of rays emanating from the filament sidewall. The solution provides complete expressions for the distributions of intensity and flux across the source as functions of position and direction with regard to the axis. The results are used to find the number distribution of brightness temperature in a large sample of randomly oriented filaments with an arbitrary distribution of lengths. The effects of external radiation on the maser structure and intensity are studied. It is proposed that the two giant bursts of H2O maser emission observed in W49 and Orion resulted from the interaction or two interacting filaments and a foreground slab amplifying a background filament.

Elitzur, Moshe↗

Design for cyclic loading endurance of composites

The application of the computer code IPACS (Integrated Probabilistic Assessment of Composite Structures) to aircraft wing type structures is described. The code performs a complete probabilistic analysis for composites taking into account the uncertainties in geometry, boundary conditions, material properties, laminate lay-ups, and loads. Results of the analysis are presented in terms of cumulative distribution functions (CDF) and probability density function (PDF) of the fatigue life of a wing type composite structure under different hygrothermal environments subjected to the random pressure. The sensitivity of the fatigue life to a number of critical structural/material variables is also computed from the analysis.

Shiao, Michael C.↗

Parallel implementation of an adaptive scheme for 3D unstructured grids on the SP2

Dynamic mesh adaption on unstructured grids is a powerful tool for computing unsteady flows that require local grid modifications to efficiently resolve solution features. For this work, we consider an edge-based adaption scheme that has shown good single-processor performance on the C90. We report on our experience parallelizing this code for the SP2. Results show a 47.0X speedup on 64 processors when 10 percent of the mesh is randomly refined. Performance deteriorates to 7.7X when the same number of edges are refined in a highly-localized region. This is because almost all the mesh adaption is confined to a single processor. However, this problem can be remedied by repartitioning the mesh immediately after targeting edges for refinement but before the actual adaption takes place. With this change, the speedup improves dramatically to 43.6X.

Strawn, Roger C.↗

Parallel Implementation of an Adaptive Scheme for 3D Unstructured Grids on the SP2

Dynamic mesh adaption on unstructured grids is a powerful tool for computing unsteady flows that require local grid modifications to efficiently resolve solution features. For this work, we consider an edge-based adaption scheme that has shown good single-processor performance on the C90. We report on our experience parallelizing this code for the SP2. Results show a 47.OX speedup on 64 processors when 10% of the mesh is randomly refined. Performance deteriorates to 7.7X when the same number of edges are refined in a highly-localized region. This is because almost all mesh adaption is confined to a single processor. However, this problem can be remedied by repartitioning the mesh immediately after targeting edges for refinement but before the actual adaption takes place. With this change, the speedup improves dramatically to 43.6X.

Oliker, Leonid↗

Prebiotic Soup-Revisiting the Miller Experiment

'Isn't life wonderful?' sang Alma Cogan and Les Howard in their almost forgotten 1953 hit. That same year, Stanley L. Miller raised the hopes of understanding the origin of life when on 15 May, Science published his paper on the synthesis of amino acids under conditions that simulated primitive Earth's atmosphere. Miller had applied an electric discharge to a mixture of CH4, NH3, H2O, and H2 - believed at the time to be the atmospheric composition of early Earth. Surprisingly, the products were not a random mixture of organic molecules, but rather a relatively small number of biochemically significant compounds such as amino acids, hydroxy acids, and urea. With the publication of these dramatic results, the modem era in the study of the origin of life began.

Bada, Jeffrey L.↗

Human performance and physiological function during a 24-hr exposure to 1% bromotrifluoromethane (Halon 1301)

Performance and physiological measurements were obtained from four pairs of men exposed for 24 hr to 1% (10,000 ppm) Halon 1301 (bromotrifluoromethane, CBrF3) and to air with order counterbalanced using a double-blind protocol. Cognitive and motor performance was assessed before, during, and after the exposures using seven scales of the Automated Portable Testing System, which produced 13 measures of performance. Halon inhalation induced decrements in 2 of the 13 measures, but actual and estimated magnitudes of the decrements were no greater than 5% of baseline values. Physiological data were obtained before, during, and after the exposures from clinical chemistry analyses of blood and urine samples, pulmonary function tests, and monitoring of vital signs. Significant change during Halon inhalation was observed for 6 of the 52 variables assessed; however, all physiological values remained within clinically acceptable limits. No cardiovascular effects were noted. This study demonstrated that exposure to 1% Halon 1301 for 24 hr can produce minor disturbance of central nervous system function as assessed by cognitive tasks.

Randomized Controlled Trial↗

Prebiotic Soup: Revisiting the Miller Experiment

Isn't life wonderful? sang Alma Cogan and Les Howard in their almost forgotten 1953 hit. That same year, Stanley L. Miller raised the hopes of understanding the origin of life when on 15 May, Science published his paper on the synthesis of amino acids under conditions that simulated primitive Earth's atmosphere. Miller had applied an electric discharge to a mixture of CH4, NH3, H2O, and H2 - believed at the time to be the atmospheric composition of early Earth. Surprisingly, the products were not a random mixture of organic molecules. but rather a relatively small number of biochemically significant compounds such as amino acids, hydroxy acids, and urea. With the publication of these dramatic results, the modern era in the study of the origin of life began.

Bada, Jeffrey L.↗

Application of the Bootstrap Statistical Method in Deriving Vibroacoustic Specifications

This paper discusses the Bootstrap Method for specification of vibroacoustic test specifications. Vibroacoustic test specifications are necessary to properly accept or qualify a spacecraft and its components for the expected acoustic, random vibration and shock environments seen on an expendable launch vehicle. Traditionally, NASA and the U.S. Air Force have employed methods of Normal Tolerance Limits to derive these test levels based upon the amount of data available, and the probability and confidence levels desired. The Normal Tolerance Limit method contains inherent assumptions about the distribution of the data. The Bootstrap is a distribution-free statistical subsampling method which uses the measured data themselves to establish estimates of statistical measures of random sources. This is achieved through the computation of large numbers of Bootstrap replicates of a data measure of interest and the use of these replicates to derive test levels consistent with the probability and confidence desired. The comparison of the results of these two methods is illustrated via an example utilizing actual spacecraft vibroacoustic data.

Hughes, William O.↗

The Helium Abundance at Quiescent Current Sheets and the Slow Solar Wind

Ulysses MAG data were used to identify current sheets during sunspot minimum years of 1994-1997 and 2004-2006. The purpose of limiting the dates was to focus attention on 'quiescent current sheets' with as little influence from ICMEs as possible. SWOOPS data were then used in a superposed epoch analysis to study Helium abundance in the vicinity of the current sheet, similar to the study done by Borrini et al. (1981). That earlier study found a narrow (ca. 2 day) minimum in He/H around the current sheet that is extremely variable from one year to the next in the period 1971-1978. A similar result is found here for data at all latitudes and distances in 2004-2006. Conversely, data from 1994-1997 produce a deep minimum several times wider (ca. 10 days). The reason for this is found to be that low He/H is more closely associated with slow wind than the current sheet per se. There are thus apparently at least two sources of slow wind, one associated with very low He/H of 0-0.02 and one associated with moderate abundance of 0.03-0.05. The large variability is a consequence of the relatively small number of current sheet encounters around solar minimum and the random distribution of low He/H intervals, lasting less than 1 day to more than 7 days, throughout slow wind.

Suess, Steven T.↗

Analysis of a Transonic Alternating Flow Phenomenon Observed During Ares Crew Launch Vehicle Wind Tunnel Tests

A transonic wind tunnel test of the Ares I-X Rigid Buffet Model (RBM) identified a Mach number regime where unusually large buffet loads are present. A subsequent investigation identified the cause of these loads to be an alternating flow phenomenon at the Crew Module-Service Module junction. The conical design of the Ares I-X Crew Module and the cylindrical design of the Service Module exposes the vehicle to unsteady pressure loads due to the sudden transition from separated to attached flow about the cone-cylinder junction with increasing Mach number. For locally transonic conditions at this junction, the flow randomly fluctuates back and forth between a subsonic separated flow and a supersonic attached flow. These fluctuations produce a square-wave like pattern in the pressure time histories which, upon integration result in large amplitude, impulsive buffet loads. Subsequent testing of the Ares I RBM found much lower buffet loads since the evolved Ares I design includes an ogive fairing that covers the Crew Module-Service Module junction, thereby making the vehicle less susceptible to the onset of alternating flow. An analysis of the alternating flow separation and attachment phenomenon indicates that the phenomenon is most severe at low angles of attack and exacerbated by the presence of vehicle protuberances. A launch vehicle may experience either a single or, at most, a few impulsive loads since it is constantly accelerating during ascent rather than dwelling at constant flow conditions in a wind tunnel. A comparison of a wind-tunnel-test-data-derived impulsive load to flight-test-data-derived load indicates a significant over-prediction in the magnitude and duration of the buffet load

Sekula, Martin K.↗

Simulating the Diffusion of Hydrogen in Amorphous Silicates: A ‘Jumping’ Migration Process and its Implications for Solar Wind Implanted Lunar Volatiles

We use molecular dynamics (MD) simulations to better explain the movement of atomic hydrogen in amorphous silica and quantify the planetary science implications of these findings. Previous MD simulations had a large range of predicted values and did not agree well with experiment. Our simulations sample atomic motion for a longer duration and consider a wider range of temperatures than previous simulations. In contrast to constant atomic motion, the hydrogen atoms were shown to undergo random intermittent jumps from one oxygen atom to another, the number of which increase with temperature. Predicted diffusion coefficients had a better agreement to experimental values than previous MD simulations, suggesting the importance of longer simulation durations for better statistics. The low activation energy and jumps observed at lunar temperatures do not support the theory of diurnal variations in OH content for an undamaged amorphous silica surface. Instead, we conclude that energetic solar wind impacts can induce two competing atomic hydrogen motion processes in the exposed surface: A prompt effect that induces jumps in the temperature spike volume, but also a long term effect of damage in the structure that traps atomic hydrogen. We then use SDTrimSP to quantify the damage created during exposure and MD to demonstrate the H retention and trapping near these defects. Damage was shown to be dependent on impact energy, with defects easily retaining implanted hydrogen. MD results like those presented herein on unweathered surfaces are therefore most relevant to magnetic anomalies. As a result, we demonstrate the importance of lunar volatile models to account for the damage state of the substrate when modelling hydrogen diffusion, retention, and subsequent OH/water production.

Liam S. Morrissey↗