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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 307 records · Page 17

Human Lacrimal Production Rate and Wetted Length of Modified Schirmer's Tear Test Strips

Purpose: To assess and compare the wetting kinetics of sheathed and unsheathed Schirmer's tear test (STT) strips, and to determine the repeatability of 5-minute wetted length (WL) and basal tear production rate (BTPR). Methods:Seventeen subjects underwent two sheathed and unsheathed STTs each for both eyes on four visits on separate days. After administration of topical anesthetic, WLs were measured every 30 seconds for 5 minutes, and BTPRs were calculated for sheathed strips. Limits of agreement (LoA), difference-versus-mean plots (DVM), and the coefficient of repeatability (CR) assessed WL and BTPR repeatabilities. Variance estimates were used to calculate sample sizes for future study. Results: For the unsheathed STT, the mean (SD) difference in WLs between visits was 0.74 (5.05) mm, LoA were [-9.17, 10.64], and CR was 9.17 mm; for the sheathed STT, the mean (SD) intervisit difference was 0.16 (5.94) mm, LoA were [-11.49, 11.8], and CR was 10.53 mm. Eight of 48 sheathed STTs and 20 of 44 unsheathed STTs showed constant WL for the final 90 seconds of the test. The mean (SD) difference between repeated visits for BTPR was approximately 0.0 μL/min, LoA were [-1.82, 1.82], and CR was 1.91 μL/min. Conclusions: Repeatability of sheathed and unsheathed 5-minute WL and BTPR is inadequate for measuring within-subject changes, but is sufficient for group studies with moderate sample sizes. Constant WL for the fiant WL with the unsheathed STT can be explained by balancing evaporation and BTPR. Translational Relevance: Repeatability of the modified STT is evaluated clinically to establish quantitative BTPRs rather than inference from a strip WL.

59 BASIC BIOLOGICAL SCIENCES↗

Process-Oriented Diagnostics: Principles, Practice, Community Development, and Common Standards

Process-oriented diagnostics (PODs) aim to provide feedback for model developers through model analysis based on physical hypotheses. However, the step from a diagnostic based on relationships among variables, even when hypothesis driven, to specific guidance for revising model formulation or parameterizations can be substantial. The POD may provide more information than a purely performance-based metric, but a gap between POD principles and providing actionable information for specific model revisions can remain. Furthermore, in coordinating diagnostics development, there is a trade-off between freedom for the developer, aiming to capture innovation, and near-term utility to the modeling center. Best practices that allow for the former, while conforming to specifications that aid the latter, are important for community diagnostics development that leads to tangible model improvements. Promising directions to close the gap between principles and practice include the interaction of PODs with perturbed physics experiments and with more quantitative process models as well as the inclusion of personnel from modeling centers in diagnostics development groups for immediate feedback during climate model revisions. Examples are provided, along with best-practice recommendations, based on practical experience from the NOAA Model Diagnostics Task Force (MDTF). Common standards for metrics and diagnostics that have arisen from a collaboration between the MDTF and the Department of Energy’s Coordinated Model Evaluation Capability are advocated as a means of uniting community diagnostics efforts.

58 GEOSCIENCES↗

Moist Static Energy Budget Analysis of Tropical Cyclone Intensification in High-Resolution Climate Models

Abstract Tropical cyclone intensification processes are explored in six high-resolution climate models. The analysis framework employs process-oriented diagnostics that focus on how convection, moisture, clouds, and related processes are coupled. These diagnostics include budgets of column moist static energy and the spatial variance of column moist static energy, where the column integral is performed between fixed pressure levels. The latter allows for the quantification of the different feedback processes responsible for the amplification of moist static energy anomalies associated with the organization of convection and cyclone spinup, including surface flux feedbacks and cloud-radiative feedbacks. Tropical cyclones (TCs) are tracked in the climate model simulations and the analysis is applied along the individual tracks and composited over many TCs. Two methods of compositing are employed: a composite over all TC snapshots in a given intensity range, and a composite over all TC snapshots at the same stage in the TC life cycle (same time relative to the time of lifetime maximum intensity for each storm). The radiative feedback contributes to TC development in all models, especially in storms of weaker intensity or earlier stages of development. Notably, the surface flux feedback is stronger in models that simulate more intense TCs. This indicates that the representation of the interaction between spatially varying surface fluxes and the developing TC is responsible for at least part of the intermodel spread in TC simulation.

Wing, Allison A.↗

Azimuthally averaged wind and thermodynamic structures of tropical cyclones in global climate models and their sensitivity to horizontal resolution

Characteristics of tropical cyclones (TCs) in global climate models (GCMs) are known to be influenced by details of the model configurations, including horizontal resolution and parameterization schemes. Understanding model-to-model differences in TC characteristics is a prerequisite for reducing uncertainty in future TC activity projections by GCMs. This study performs a process-level examination of TC structures in eight GCM simulations that span a range of horizontal resolutions from 1° to 0.25°. A recently developed set of process-oriented diagnostics is used to examine the azimuthally averaged wind and thermodynamic structures of the GCM-simulated TCs. Results indicate that the inner-core wind structures of simulated TCs are more strongly constrained by the horizontal resolutions of the models than are the thermodynamic structures of those TCs. As expected, the structures of TC circulations become more realistic with smaller horizontal grid spacing, such that the radii of maximum wind (RMW) become smaller, and the maximum vertical velocities occur off the center. However, the RMWs are still too large, especially at higher intensities, and there are rising motions occurring at the storm centers, inconsistently with observations. The distributions of precipitation, moisture, radiative and surface turbulent heat fluxes around TCs are diverse, even across models with similar horizontal resolutions. At the same horizontal resolution, models that produce greater rainfall in the inner-core regions tend to simulate stronger TCs. Further, when TCs are weak, the radial gradient of net column radiative flux convergence is comparable to that of surface turbulent heat fluxes, emphasizing the importance of cloud-radiative feedbacks during the early developmental phases of TCs.

54 ENVIRONMENTAL SCIENCES↗

An Evaluation of Tropical Cyclone Rainfall Structures in the HighResMIP Simulations against Satellite Observations

This study evaluates tropical cyclone (TC) rainfall structures in the CMIP6 HighResMIP global climate model (GCM) simulations against satellite rainfall retrievals. Here, we specifically focus on TCs within the deep tropics (25°S–25°N). Analysis of TC rain rate composites indicates that in comparison to the satellite observations at the same intensity, many HighResMIP simulations tend to overproduce rain rates around TCs, in terms of both maximum rain rate magnitude and area-averaged rain rates. In addition, as model horizontal resolution increases, the magnitude of the peak rain rate appears to increase. However, the area-averaged rain rates decrease with increasing horizontal resolution, partly due to the TC eyewall being located closer to the TC center, thus occupying a smaller area and contributing less to the area-averaged rain rates. The effect of ocean coupling is to lower the TC rain rates, bringing them closer to the satellite observations, due to reduced horizontal moisture flux convergence and surface latent heat flux beneath TCs. Examination of horizontal rain rate distributions indicates that vertical wind shear–induced rainfall asymmetries in HighResMIP-simulated TCs are qualitatively consistent with the observations. In addition, a positive relationship is observed between the area-averaged inner-core rainfall and TC intensification likelihoods across the HighResMIP simulations, as GCM simulations producing stronger TCs more frequently have the greater rainfall close to the center, in agreement with previous theoretical and GCM simulation results.

54 ENVIRONMENTAL SCIENCES↗

Genome sequence of the model rice variety KitaakeX

Abstract Background The availability of thousands of complete rice genome sequences from diverse varieties and accessions has laid the foundation for in-depth exploration of the rice genome. One drawback to these collections is that most of these rice varieties have long life cycles, and/or low transformation efficiencies, which limits their usefulness as model organisms for functional genomics studies. In contrast, the rice variety Kitaake has a rapid life cycle (9 weeks seed to seed) and is easy to transform and propagate. For these reasons, Kitaake has emerged as a model for studies of diverse monocotyledonous species. Results Here, we report the de novo genome sequencing and analysis of Oryza sativa ssp. japonica variety KitaakeX, a Kitaake plant carrying the rice XA21 immune receptor. Our KitaakeX sequence assembly contains 377.6 Mb, consisting of 33 scaffolds (476 contigs) with a contig N50 of 1.4 Mb. Complementing the assembly are detailed gene annotations of 35,594 protein coding genes. We identified 331,335 genomic variations between KitaakeX and Nipponbare (ssp. japonica ), and 2,785,991 variations between KitaakeX and Zhenshan97 (ssp. indica ). We also compared Kitaake resequencing reads to the KitaakeX assembly and identified 219 small variations. The high-quality genome of the model rice plant KitaakeX will accelerate rice functional genomics. Conclusions The high quality, de novo assembly of the KitaakeX genome will serve as a useful reference genome for rice and will accelerate functional genomics studies of rice and other species.

Nipponbare↗

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

Abstract Background Plants can transmit somatic mutations and epimutations to offspring, which in turn can affect fitness. Knowledge of the rate at which these variations arise is necessary to understand how plant development contributes to local adaption in an ecoevolutionary context, particularly in long-lived perennials. Results Here, we generate a new high-quality reference genome from the oldest branch of a wild Populus trichocarpa tree with two dominant stems which have been evolving independently for 330 years. By sampling multiple, age-estimated branches of this tree, we use a multi-omics approach to quantify age-related somatic changes at the genetic, epigenetic, and transcriptional level. We show that the per-year somatic mutation and epimutation rates are lower than in annuals and that transcriptional variation is mainly independent of age divergence and cytosine methylation. Furthermore, a detailed analysis of the somatic epimutation spectrum indicates that transgenerationally heritable epimutations originate mainly from DNA methylation maintenance errors during mitotic rather than during meiotic cell divisions. Conclusion Taken together, our study provides unprecedented insights into the origin of nucleotide and functional variation in a long-lived perennial plant.

59 BASIC BIOLOGICAL SCIENCES↗

Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

The cancer genome is commonly altered with thousands of structural rearrangements including insertions, deletions, translocation, inversions, duplications, and copy number variations. Thus, structural variant (SV) characterization plays a paramount role in cancer target identification, oncology diagnostics, and personalized medicine. As part of the SEQC2 Consortium effort, the present study established and evaluated a consensus SV call set using a breast cancer reference cell line and matched normal control derived from the same donor, which were used in our companion benchmarking studies as reference samples. We systematically investigated somatic SVs in the reference cancer cell line by comparing to a matched normal cell line using multiple NGS platforms including Illumina short-read, 10X Genomics linked reads, PacBio long reads, Oxford Nanopore long reads, and high-throughput chromosome conformation capture (Hi-C). We established a consensus SV call set of a total of 1788 SVs including 717 deletions, 230 duplications, 551 insertions, 133 inversions, 146 translocations, and 11 breakends for the reference cancer cell line. To independently evaluate and cross-validate the accuracy of our consensus SV call set, we used orthogonal methods including PCR-based validation, Affymetrix arrays, Bionano optical mapping, and identification of fusion genes detected from RNA-seq. We evaluated the strengths and weaknesses of each NGS technology for SV determination, and our findings provide an actionable guide to improve cancer genome SV detection sensitivity and accuracy. A high-confidence consensus SV call set was established for the reference cancer cell line. A large subset of the variants identified was validated by multiple orthogonal methods.

59 BASIC BIOLOGICAL SCIENCES↗

Repulsive expansion dynamics in colony growth and gene expression

Spatial expansion of a population of cells can arise from growth of microorganisms, plant cells, and mammalian cells. It underlies normal or dysfunctional tissue development, and it can be exploited as the foundation for programming spatial patterns. This expansion is often driven by continuous growth and division of cells within a colony, which in turn pushes the peripheral cells outward. This process generates a repulsion velocity field at each location within the colony. Here we show that this process can be approximated as coarse-grained repulsive-expansion kinetics. This framework enables accurate and efficient simulation of growth and gene expression dynamics in radially symmetric colonies with homogenous z-directional distribution. It is robust even if cells are not spherical and vary in size. The simplicity of the resulting mathematical framework also greatly facilitates generation of mechanistic insights.

59 BASIC BIOLOGICAL SCIENCES↗

Binder Jet Tooling for Automotive Lighting Industry. CRADA Final Report

The goal of this collaborative project between Oak Ridge National Laboratory’s (ORNL) Manufacturing Demonstration Facility (MDF) and Grote Industries, LLC was to develop additively manufactured tooling to produce lighting products in a production environment. The project explored the use of metal powder bed systems to rapidly manufacture moderately sized injection molding tools (less than 8” x 8” x 2”) for automotive lamps. The team designed the mold (male and female), manufactured the mold using the binder jet process, experimented with finishing processes, manufactured parts using the molds, and monitored the wear on the mold to predict life.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Countroom Gamma Spectroscopy Library Updates

The C-NR Countroom analyzes gamma spectroscopy data using three codes, SAP (which is the combination of SPECANAL and RAYGUN), GAMANAL and UNISAMPO. The codes use libraries which are chosen by the user of gamma emission data to do the identification and quantification. The Countroom maintains nine unique libraries for use in analysis. Historically, the values contained in these libraries has not been consistently updated and many values are quite old and do not reflect the state-of-the-art.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

Frequency Comb-Based Remote Methane Observation Network (Final Scientific/Technical Report)

ARPA-E investment in long-range, frequency comb-based methane detection has resulted in the first scalable, cost-effective continuous methane emissions system. At the onset of this ARPA-E MONITOR award, the dual-frequency comb spectrometer was a sprawling, expensive, laboratory-confined device which had only recently been demonstrated capable of measuring atmospheric trace gases over open-paths. Bringing the technology to the point of being able to monitor for and characterize methane emissions at oil and natural gas production facilities seemed an almost impossible task. Over the subsequent months and years, our team transitioned the Nobel-prize-winning frequency-comb-laser spectrometer technology to a field-deployed regional methane leak detection system. The spectrometer enables highly sensitive near-infrared absorption measurements of methane along kilometer-scale laser beam paths. The measurements are coupled with an atmospheric modeling and inversion framework to triangulate the location of emission sources and quantify the emission rates.

03 NATURAL GAS↗

FY2020 Rotating Bed Reactor for Iodine Removal from WTP Melter Effluent to Support DFLAW Start-Up

In Performance Assessment (PA) of the Hanford Integrated Disposal Facility (IDF), 129 I is a significant contributor to the risk. The 2017 IDF PA accounted for 0.22% of the total 129 I inventory in Hanford tank waste as residing in the solidified liquid waste from the Effluent Treatment Facility (ETF). However, recent estimates suggest that higher percentages of the iodine processed at the Hanford Waste Treatment and Immobilization Plant (WTP) may be present in the liquid waste routed to the Liquid Effluent Retention Facility (LERF) for eventual treatment at the ETF. In addition, a recent integrated melter test performed at the Vitreous State Laboratory (VSL) at The Catholic University of America (CUA) showed the possibility that a significant fraction (>50%) of the total iodine in the melter feed could be present in the aqueous waste stream destined for the ETF. This stream represents a combination of the Effluent Management Facility (EMF) evaporator overhead condensate and the liquid waste from the WTP off-gas caustic scrubber. Higher levels of 129 I in this stream could affect the LERF and ETF Hazard Categorizations as well as the acceptability of the solidified ETF liquid secondary waste brine for disposal at the IDF. Accordingly, there is a need to investigate and develop potential methods and processes to mitigate this risk. Washington River Protection Solutions, LLC (WRPS) tasked Atkins and VSL to perform development and testing work to evaluate potential methods for removal of iodine species from the waste stream routed to the LERF. In particular, the testing investigated the use of an Atkins-SpinIonic™ Rotating Bed Reactor (RBR) system as a potential alternative to conventional column-based ion exchange or absorption processes. The present report provides results obtained from testing with an RBR system for the removal of iodine from simulants of the projected WTP waste stream that discharges to the LERF.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

LYNM-PE1 Seismic Parameters from Borehole Log, Laboratory, and Tabletop Measurements

The goal of this work is to provide a database of quality-checked seismic parameters that can be integrated with the Geologic Framework Model (GFM) for the LYNM-PE1 (Low Yield Nuclear Monitoring – Physical Experiment 1) testbed. We integrated data from geophysical borehole logs, tabletop measurements on collected core, and laboratory measurements. We reviewed for internal consistency among each measurement type, documented the caveats of measurement conditions, and integrated lithologic logs to check the validity of outlier values. The resulting consolidated parameter tables can be used as inputs for modeling and analysis codes and are designed to interface with the GFM, which is being actively developed.

58 GEOSCIENCES↗

Regulatory Spike Testing of RPP-WTP LAW and HLW Glasses for Compliance with Land Disposal Restrictions, VSL-03R3760-1, Rev. 1

The United States Department of Energy’s (DOE’s) Hanford site is the current location of storage of about 50 million gallons of mixed waste. This waste is stored in underground tanks at the Hanford site and is both a listed and characteristic waste, as defined in 40 CFR Part 261, and a dangerous waste according to Chapter 173-303 of the Washington Administrative Code (WAC). The waste is also subject to the Land Disposal Restrictions (LDR) (40 CFR Part 268 and WAC 173-303-140). The River Protection Project - Waste Treatment Plant (RPP-WTP) will provide DOE with a means for treating this waste by vitrification (for subsequent disposal). The tank waste will be partitioned into low and high activity fractions, which will then be vitrified respectively into Immobilized Low Activity Waste (ILAW) and Immobilized High Level Waste (IHLW) products. The ILAW product will be disposed of in an engineered facility on the Hanford site while the IHLW product will be directed to the national deep geological disposal facility for high level nuclear waste. The ILAW and IHLW products must meet a variety of requirements with respect to protection of the environment.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Regulatory Testing of WTP HL W Glasses for Compliance with Delisting Requirements, VSL-03R3780-1, Rev. 1

(Part of the data collected for this work and discussed in this report was subject to data quality and bias issues. All the affected tests have subsequently been repeated, as directed by the Waste Treatment Plant Project, and new statistical analyses have been performed on the revised data set. A subsequently-issued report supercedes this report and describes the revised data, together with the revised composition-property models (Kot et al. 2004). The reader should refer to the new report for discussion of the revised data set and composition-property (TCLP cadmium release) models. None of the data for the spike glasses, designed for Case 1 and Case 2 COPCs testing, were affected by this issue.)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Glass Formulation and Testing with RPP-WTP HLW Simulants (Final Report)

This report presents the results from HLW glass formulation work that was conducted at the Vitreous State Laboratory of The Catholic University of America during Part B1 of the RPP-WTP Project (formally known as TWRS-P) in support of the Privatization contractor, BNFL, Inc. Glass formulation development is required to provide data that are essential for design of the vitrification facility in the near term and for safe and reliable operation of that facility in the longer-term. These data also form the bases from which contractually and technically acceptable immobilized high-level waste (IHLW) products will be devised. Glass formulation therefore impacts many aspects of the vitrification facility design, overall process economics, and contractual compliance. As an integral part of the overall system design, development of glass formulations requires input from many sources including tank waste characterization, pretreatment process definition, flow sheet development, and processing schedules. Accordingly, the glass formulation effort must be responsive to new information as the facility design basis evolves.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗