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At least 307 records · Page 17

GMI-IPS: Processing & Visualization Software Used in ATom DC-8 Aircraft Studies

NASA's Atmospheric Tomography Mission (ATom) deployed in each of the four seasons during 2016-2018, the DC-8 aircraft in order to establish global-scale datasets intended to improve the representation of chemically reactive gases in global atmospheric chemistry models (ACMs). The Global Modeling Initiative (GMI) executed simulations for each ATom flight using the GMI Chemistry Transport Model (GMI-CTM) to provide species concentrations of chemical gases along the DC-8 flight transects. To solve the problem of translating the GMI-CTM simulation data to the unique spatial resolutions of each ATom flight, the GMI ICARTT Processing Software (GMI-IPS) was developed.The GMI-IPS is written in Python and provides data processing, flight extraction, and visualization support for aircraft research projects using ICARTT format, which is a standard format for airborne instrument data. Additionally, the GMI-IPS interpolates global gridded model data from Hierarchical Data Format (HDF) to ICARTT compatible flight transects. Software classes for instruments and collections provided by the ATom DC-8 aircraft such as MER10, MMS, etc. are derived from a common base class. Other functionality provided by the GMI-IPS are: deriving missing flight entries along a transect, reading ICARTT entries from file, and providing Python data structures for storing flight and model information, and more.The GMI-IPS is GIT source controlled, has approximately 30,000 lines of code, and supports parallelization across data collections. It delivered GMI-CTM data for more than forty distinct DC-8 aircraft flights that took place under ATom. The output ICARTT files adhere to format standard V1.1, and pass the scan utility provided by NASA LaRC Airborne Science Data for Atmospheric Composition. This presentation will include a software and methods overview, and results from ATom, including assessments using the GMI-CTM showing how well observations from ATom flight transects represent a broader region.

Damon, M. R.↗

Predicting Execution Times for Disk-based and In-Situ Parallel Data Analytics (Final Technical Report)

In recent years, there has been a significant amount of interests in in-situ analytics on simulation programs. For a variety of reasons, it is desirable to be able to predict the execution time of an analytics program. At the same time, frameworks such as MapReduce have become popular for scientific data analytics. This paper focuses on developing performance models for predicting execution time of parallel data analytics, with a special emphasis on in-situ analytics. We take two distinct approach towards performance prediction. We first expand SKOPE (a SKeleton framewOrk for Performance Exploration) with performance models for disk data read, cache performance, and page fault penalty. Second, an analytical performance model is also developed. We have evaluated our performance prediction framework as well as the analytical model on three hardware setups with well-known data mining algorithms implemented in three programming paradigms, MapReduce, MATE (a MapReduce-like parallel system with an alternate API for multi-core environments) and Smart (a MapReduce-like framework for in-situ analytics). Results show that our performance prediction framework along with the incorporated performance models are capable of accurately predicting execution times for parallel scientific analytics on different hardware setups.

97 MATHEMATICS AND COMPUTING↗

Model Checking Abstract PLEXIL Programs with SMART

We describe a method to automatically generate discrete-state models of abstract Plan Execution Interchange Language (PLEXIL) programs that can be analyzed using model checking tools. Starting from a high-level description of a PLEXIL program or a family of programs with common characteristics, the generator lays the framework that models the principles of program execution. The concrete parts of the program are not automatically generated, but require the modeler to introduce them by hand. As a case study, we generate models to verify properties of the PLEXIL macro constructs that are introduced as shorthand notation. After an exhaustive analysis, we conclude that the macro definitions obey the intended semantics and behave as expected, but contingently on a few specific requirements on the timing semantics of micro-steps in the concrete executive implementation.

Siminiceanu, Radu I.↗

Depletion Benchmark Analysis on a Lead Fast Reactor Using PyARC/OpenMC

PyARC is a user-friendly fast reactor analysis tool that automates multiphysics workflows using the “extended suite” of Argonne Reactor Computation (ARC) codes by providing a single common input for model definition, code execution, and output post-processing. A lead fast reactor (LFR) benchmark model is used to perform depletion calculations using the newly integrated OpenMC depletion capability in PyARC, building on previous analysis using the ARC codes through PyARC and Serpent. Results for core lifetime k-effective, shutdown decay heat, and end-of-life heavy-metal inventory are compared to verify the PyARC/OpenMC integration against the PyARC/ARC workflow and Serpent for depletion analysis of LFR designs. The results show satisfactory agreement among all three methods, with remaining discrepancies largely attributable to differences in nuclear data libraries and decay-chain modeling detail rather than to fundamental modeling limitations.

Kiesling, Kalin R.↗

Programming Models in HPC

These are the slides for a presentation on programming models in HPC, at the Los Alamos National Laboratory's Parallel Computing Summer School. The following topics are covered: Flynn's Taxonomy of computer architectures; single instruction single data; single instruction multiple data; multiple instruction multiple data; address space organization; definition of Trinity (Intel Xeon-Phi is a MIMD architecture); single program multiple data; multiple program multiple data; ExMatEx workflow overview; definition of a programming model, programming languages, runtime systems; programming model and environments; MPI (Message Passing Interface); OpenMP; Kokkos (Performance Portable Thread-Parallel Programming Model); Kokkos abstractions, patterns, policies, and spaces; RAJA, a systematic approach to node-level portability and tuning; overview of the Legion Programming Model; mapping tasks and data to hardware resources; interoperability: supporting task-level models; Legion S3D execution and performance details; workflow, integration of external resources into the programming model.

97 MATHEMATICS AND COMPUTING↗

Development and Implementation of Dynamic Scripts to Support Local Model Verification at National Weather Service Weather Forecast Offices

Local modeling with a customized configuration is conducted at National Weather Service (NWS) Weather Forecast Offices (WFOs) to produce high-resolution numerical forecasts that can better simulate local weather phenomena and complement larger scale global and regional models. The advent of the Environmental Modeling System (EMS), which provides a pre-compiled version of the Weather Research and Forecasting (WRF) model and wrapper Perl scripts, has enabled forecasters to easily configure and execute the WRF model on local workstations. NWS WFOs often use EMS output to help in forecasting highly localized, mesoscale features such as convective initiation, the timing and inland extent of lake effect snow bands, lake and sea breezes, and topographically-modified winds. However, quantitatively evaluating model performance to determine errors and biases still proves to be one of the challenges in running a local model. Developed at the National Center for Atmospheric Research (NCAR), the Model Evaluation Tools (MET) verification software makes performing these types of quantitative analyses easier, but operational forecasters do not generally have time to familiarize themselves with navigating the sometimes complex configurations associated with the MET tools. To assist forecasters in running a subset of MET programs and capabilities, the Short-term Prediction Research and Transition (SPoRT) Center has developed and transitioned a set of dynamic, easily configurable Perl scripts to collaborating NWS WFOs. The objective of these scripts is to provide SPoRT collaborating partners in the NWS with the ability to evaluate the skill of their local EMS model runs in near real time with little prior knowledge of the MET package. The ultimate goal is to make these verification scripts available to the broader NWS community in a future version of the EMS software. This paper provides an overview of the SPoRT MET scripts, instructions for how the scripts are run, and example use cases.

Zavordsky, Bradley↗

Development and Implementation of Dynamic Scripts to Support Local Model Verification at National Weather Service Weather Forecast Offices

Local modeling with a customized configuration is conducted at National Weather Service (NWS) Weather Forecast Offices (WFOs) to produce high-resolution numerical forecasts that can better simulate local weather phenomena and complement larger scale global and regional models. The advent of the Environmental Modeling System (EMS), which provides a pre-compiled version of the Weather Research and Forecasting (WRF) model and wrapper Perl scripts, has enabled forecasters to easily configure and execute the WRF model on local workstations. NWS WFOs often use EMS output to help in forecasting highly localized, mesoscale features such as convective initiation, the timing and inland extent of lake effect snow bands, lake and sea breezes, and topographically-modified winds. However, quantitatively evaluating model performance to determine errors and biases still proves to be one of the challenges in running a local model. Developed at the National Center for Atmospheric Research (NCAR), the Model Evaluation Tools (MET) verification software makes performing these types of quantitative analyses easier, but operational forecasters do not generally have time to familiarize themselves with navigating the sometimes complex configurations associated with the MET tools. To assist forecasters in running a subset of MET programs and capabilities, the Short-term Prediction Research and Transition (SPoRT) Center has developed and transitioned a set of dynamic, easily configurable Perl scripts to collaborating NWS WFOs. The objective of these scripts is to provide SPoRT collaborating partners in the NWS with the ability to evaluate the skill of their local EMS model runs in near real time with little prior knowledge of the MET package. The ultimate goal is to make these verification scripts available to the broader NWS community in a future version of the EMS software. This paper provides an overview of the SPoRT MET scripts, instructions for how the scripts are run, and example use cases.

Zavodsky, Bradley↗

Towards a Methodology and Tooling for Model-Based Probabilistic Risk Assessment (PRA)

A Probabilistic Risk Assessment (PRA) aims to identify and assess potential risks to system technical performance requirements for the purpose of furnishing risk insights into project decisions. PRAs have traditionally been conducted manually using software with an isolated data model. As system complexity rises it becomes difficult to ensure consistency between a PRA, the evolving system design, and other engineering analyses; the techniques for conducting PRAs must evolve to meet this challenge. This work presents progress towards a methodology and tooling for conducting a PRA by leveraging data in the system model, embedded for other purposes and analyses, to conduct a PRA. An approach for identifying the appropriate probabilistic equation for each risk scenario from a standard library is presented, which is a significant step towards the quantification of the likelihood of a risk scenario occurrence. The final calculation of the likelihood of occurrence is left as an item of future work. We also present the development of preliminary tooling to carry out the methodology on a well-formed system model. The information needed to conduct the PRA is embedded in a consistent manner in a system model, so the model-based PRA can be regularly executed as the system model changes. The ability to modify the PRA in concert with lifecycle evolution affords a project the opportunity to track the extent to which system modification impacts compliance with requirements. These aspects of this model-based PRA methodology make it capable of managing risk in increasingly complex technical systems.

Schreiner, Samuel S.↗

Analyzing the Efficacy of Flexible Execution, Replanning, and Plan Optimization for a Planetary Lander

Plan execution in unknown environments poses a number of challenges: uncertainty in domain modeling, stochasticity at execution time, and the presence of exogenous events. These challenges motivate an integrated approach to planning and execution that is able to respond intelligently to variation. We examine this problem in the context of the Europa Lander mission concept, and evaluate a planning and execution framework that responds to feedback and task failure using two techniques: flexible execution and replanning with plan optimization. We develop a theoretical framework to estimate gains from these techniques, and we compare these predictions to empirical results generated in simulation. These results indicate that an integrated approach to planning and execution leveraging flexible execution, replanning, and utility maximization shows significant promise for future tightly-constrained space missions that must address significant uncertainty.

Chien, Steve↗

Analyzing the Efficacy of Flexible Execution, Replanning, and Plan Optimization for a Planetary Lander

Plan execution in unknown environments poses a number of challenges: uncertainty in domain modeling, stochasticity at execution time, and the presence of exogenous events. These challenges motivate an integrated approach to planning and execution that is able to respond intelligently to variation. We examine this problem in the context of the Europa Lander mission concept, and propose a planning and execution framework that responds to feedback and task failure using two techniques: flexible execution and replanning with plan optimization. We develop a theoretical framework to predict the value of each of these techniques, and we compare these predictions to empirical results generated in simulation. We demonstrate that an integrated approach to planning and execution that is grounded in flexible execution, replanning, and utility maximization will be an enabling technology for future tightly-constrained planetary surface missions.

Chien, Steve↗

Analyzing the Efficacy of Flexible Execution, Replanning, and Plan Optimization for a Planetary Lander

Plan execution in unknown environments poses a number of challenges: uncertainty in domain modeling, stochasticity at execution time, and the presence of exogenous events. These challenges motivate an integrated approach to planning and execution that is able to respond intelligently to variation. We examine this problem in the context of the Europa Lander mission concept, and propose a planning and execution framework that responds to feedback and task failure using two techniques: flexible execution and replanning with plan optimization. We develop a theoretical framework to predict the value of each of these techniques, and we compare these predictions to empirical results generated in simulation. We demonstrate that an integrated approach to planning and execution that is grounded in flexible execution, replanning, and utility maximization will be an enabling technology for future tightly-constrained planetary surface missions.

Basich, Connor↗

Scalable Heterogeneous Execution of a Coupled-Cluster Model with Perturbative Triples

The CCSD(T) coupled-cluster model with perturbative triples is considered a gold standard for computational modeling of the correlated behavior of electrons in molecular systems. A fundamental constraint is the relatively small global-memory capacity in GPUs compared to the main-memory capacity on host nodes, necessitating relatively smaller tile sizes for high-dimensional tensor contractions in NWChem's GPU-accelerated implementation of the CCSD(T) method. A coordinated redesign is described to address this limitation and associated data movement overheads, including a novel fused GPU kernel for a set of tensor contractions, along with inter-node communication optimization and data caching. The new implementation of GPU-accelerated CCSD(T) improves overall performance by 3.4x. Finally, we discuss the trade-offs in using this fused algorithm on current and future supercomputing platforms.

Kim, Jinsung↗

Space Shuttle and Launch Pad Lift-Off Debris Transport Analysis: SRB Plume-Driven

This paper discusses the Space Shuttle Lift-Off model developed for potential Lift-Off Debris transport. A critical Lift-Off portion of the flight is defined from approximately 1.5 sec after SRB Ignition up to 'Tower Clear', where exhaust plume interactions with the Launch Pad occur. A CFD model containing the Space Shuttle and Launch Pad geometry has been constructed and executed. The CFD model works in conjunction with a debris particle transport model and a debris particle impact damage tolerance model. These models have been used to assess the effects of the Space Shuttle plumes, the wind environment, their interactions with the Launch Pad, and their ultimate effect on potential debris during Lift-Off. Emphasis in this paper is on potential debris that might be caught by the SRB plumes.

West, Jeff↗

Update transport - A new technique for update synchronization in replicated database systems

A fully distributed approach to update synchronization is presented where each site completely executes every update. This approach has several features-higher resiliency to different kinds of failures, higher parallelism, improved response to user requests, and low communication overhead. A fully distributed algorithm for concurrency control obtained by rehashing a previously published semidistributed algorithm into the fully distributed model of update execution is presented. A performance model of replicated database systems is presented and used to study the performance of the proposed algorithm and its semidistributed version. The results of the performance study reveal that the proposed approach can substantially improve the performance at the cost of moderate input/output overhead.

Singhal, Mukesh↗

Execution Strategy Analysis (ESA) Origin Sites Readiness Model - 19073

This is a technical paper that does not take into account the contractual limitations under the Standard Contract for Disposal of Spent Nuclear Fuel and/or High-Level Radioactive Waste (Standard Contract) (10 CFR Part 961). Under the provisions of the Standard Contract, DOE does not consider spent nuclear fuel in multi-assembly canisters to be an acceptable waste form, absent a mutually agreed to contract amendment. To the extent discussions or recommendations in this paper conflict with the provisions of the Standard Contract, the Standard Contract provisions prevail. The DOE Office of Nuclear Energy (DOE-NE) Office of Spent Fuel and Waste Disposition (SFWD) Integrated Waste Management System (IWMS) program is developing an Execution Strategy Analysis (ESA) Origin Sites Readiness Model using the Goldsim{sup TM} software application to provide information on potential future approaches for removing SNF and HLW from origin sites such as commercial nuclear power plant sites. The purpose of this ESA model is to apply integrated waste management system analysis, system engineering, and decision analysis principles to inform future decisions regarding potential future nuclear waste management system architectures. The ESA Origin Sites Readiness Model is a dynamic simulation modeling capability. It is developed for use in the analysis and comparison of potential future implementation strategies associated with an integrated nuclear waste management program. The model is designed to be independent of the destination of the SNF or HLW so the results from the Origin Sites Readiness Model are equally applicable to a wide range of scenarios involving shipments to generic destinations in an integrated waste management system. The model explicitly takes significant assumptions, uncertainties, and risks into account. Currently, the ESA Origin Sites Readiness Model includes 14 shutdown sites (Maine Yankee, Yankee Rowe, Connecticut Yankee, Vermont Yankee, La Crosse, Big Rock Point, Zion, Kewaunee, Fort Calhoun, Trojan, Rancho Seco, Humboldt Bay, San Onofre, and Crystal River) and is designed to be modular so that other sites can be added in the future. The model also includes multiple transportation modes (heavy haul truck, rail, and barge), activities related to the acquisition of transportation assets such as railcars and transportation casks, and site-specific considerations of on-site and near-site transportation infrastructure. The model was developed using the ESA process with Subject Matter Experts (SME); it incorporates uncertainty and risks and provides a structured, systematic methodology for evaluating potential SNF campaign scenarios. The model also complements other system-level logistics tools being developed by SFWD. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DART-PFLOTRAN: An ensemble-based data assimilation system for estimating subsurface flow and transport model parameters

Ensemble-based Data Assimilation (EDA), based on the Monte Carlo approach, has been effectively applied to estimate model parameters through inverse modeling in subsurface flow and transport problems. However, implementation of EDA approach involves a complicated workflow that include setting up and executing ensemble forward model simulations, processing observations and model simulation results for parameter updates, and repeat for sequential or iterative EDA. To facilitate the management of such workflow and lower the barriers for adopting EDA-based parameter estimation in subsurface science, we develop a generic software frame-work linking the Data Assimilation Research Testbed (DART) with a massively parallel subsurface FLOw and TRANsport code PFLOTRAN. The new DART-PFLOTRAN leverages both the core data assimilation engines in DART and the computational power afforded by PFLOTRAN. In addition to the standard smoother and filtering options, DART-PFLOTRAN enables an iterative EDA workflow based on the Ensemble Smoother for Multiple Data Assimilation method (ES-MDA) to improve estimation accuracy for nonlinear forward problems. Here, we verify the implementation of ES-MDA in DART-PFLOTRAN using two synthetic cases designed to estimate static permeability and dynamic exchange fluxes across the riverbed, respectively, from continuous temperature measurements made across a depth profile. One-dimensional hydro-thermal simulations are performed in both cases to relate temperature responses with the parameters of interest. In the case of estimating dynamic parameters, we demonstrate the flexibility of DART-PFLOTRAN in automating sequential ES-MDA workflow, which will significantly reduce the time researchers spend on managing complex workflows in similar applications. Both studies yield accurate estimations of the parameters compared to their synthetic truth, while ES-MDA leads to more accurate estimation when a high level of nonlinearity exist between observed responses and unknown parameters. With a code base in Python and Fortran, DART-PFLOTRAN paves the way for applications in large-scale subsurface inverse modeling by automating the complex workflow of sequential ES-MDA that can be executed on various computing platforms.

97 MATHEMATICS AND COMPUTING↗

Shuttle operations simulation model programmers'/users' manual

The prospective user of the shuttle operations simulation (SOS) model is given sufficient information to enable him to perform simulation studies of the space shuttle launch-to-launch operations cycle. The procedures used for modifying the SOS model to meet user requirements are described. The various control card sequences required to execute the SOS model are given. The report is written for users with varying computer simulation experience. A description of the components of the SOS model is included that presents both an explanation of the logic involved in the simulation of the shuttle operations cycle and a description of the routines used to support the actual simulation.

Porter, D. G.↗